Wall clock time and date at job start Fri Apr 10 2020 18:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.64640 * 2 1 4 4 C 1.54322 * 110.72138 * 236.85317 * 2 1 3 5 5 N 1.47028 * 107.27088 * 219.44490 * 4 2 1 6 6 C 1.36938 * 125.64572 * 178.90316 * 5 4 2 7 7 H 1.07998 * 119.99887 * 180.02562 * 6 5 4 8 8 C 1.38814 * 120.00333 * 0.02854 * 6 5 4 9 9 N 1.31616 * 119.99771 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00248 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46889 * 59.99789 * 10 8 6 12 12 H 1.48495 * 109.47226 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46883 * 300.00258 * 10 8 6 14 14 C 1.47427 * 108.70254 * 358.94369 * 5 4 2 15 15 C 1.54903 * 104.83210 * 24.12566 * 14 5 4 16 16 H 1.08997 * 111.00304 * 81.06928 * 15 14 5 17 17 C 1.53002 * 111.00286 * 204.91945 * 15 14 5 18 18 N 1.46505 * 109.46906 * 287.19549 * 17 15 14 19 19 C 1.34774 * 120.00032 * 180.02562 * 18 17 15 20 20 O 1.21696 * 120.00138 * 354.60302 * 19 18 17 21 21 C 1.46662 * 120.00023 * 174.60306 * 19 18 17 22 22 C 1.36670 * 126.84447 * 5.02504 * 21 19 18 23 23 N 1.33296 * 107.83435 * 179.89577 * 22 21 19 24 24 C 1.31029 * 109.70227 * 0.37636 * 23 22 21 25 25 Cl 1.73602 * 125.43482 * 179.79780 * 24 23 22 26 26 N 1.34600 * 109.12668 * 359.76298 * 24 23 22 27 27 C 1.46503 * 126.48870 * 179.97438 * 26 24 23 28 28 H 1.08998 * 109.46969 * 181.69429 * 1 2 3 29 29 H 1.09003 * 109.46882 * 301.69512 * 1 2 3 30 30 H 1.09002 * 109.46787 * 61.69355 * 1 2 3 31 31 H 1.09001 * 109.88326 * 338.85900 * 4 2 1 32 32 H 1.09003 * 109.88240 * 99.87662 * 4 2 1 33 33 H 0.97002 * 119.99758 * 180.02562 * 9 8 6 34 34 H 1.09002 * 110.36474 * 142.96785 * 14 5 4 35 35 H 1.09002 * 110.35935 * 265.28821 * 14 5 4 36 36 H 1.08993 * 109.47307 * 47.19537 * 17 15 14 37 37 H 1.08998 * 109.47478 * 167.20175 * 17 15 14 38 38 H 0.96995 * 120.00123 * 0.02562 * 18 17 15 39 39 H 1.08005 * 126.07836 * 359.97438 * 22 21 19 40 40 H 1.09003 * 109.47203 * 272.52509 * 27 26 24 41 41 H 1.09003 * 109.46840 * 32.52449 * 27 26 24 42 42 H 1.09000 * 109.47143 * 152.52158 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2085 5 7 3.2445 -1.5496 -0.7414 6 6 4.0035 -2.3956 -1.5052 7 1 4.8455 -2.9103 -1.0665 8 6 3.6906 -2.5917 -2.8434 9 7 2.6642 -1.9647 -3.3779 10 14 4.7263 -3.7453 -3.8854 11 1 4.6839 -5.1107 -3.3033 12 1 4.1878 -3.7806 -5.2689 13 1 6.1302 -3.2620 -3.9123 14 6 3.4632 -1.2509 0.6856 15 6 2.0789 -0.7975 1.2125 16 1 1.4452 -1.6559 1.4348 17 6 2.2277 0.1040 2.4398 18 7 2.6327 -0.7039 3.5929 19 6 2.8248 -0.1186 4.7916 20 8 2.7583 1.0921 4.8953 21 6 3.1141 -0.9408 5.9711 22 6 3.3143 -2.2925 5.9989 23 7 3.5498 -2.6445 7.2627 24 6 3.5002 -1.5855 8.0328 25 17 3.7419 -1.5788 9.7519 26 7 3.2328 -0.5035 7.2781 27 6 3.0932 0.8759 7.7513 28 1 -0.3633 -1.0272 0.0304 29 1 -0.3633 0.5400 0.8744 30 1 -0.3633 0.4873 -0.9048 31 1 1.3130 -1.4733 -1.5799 32 1 2.3716 -0.0993 -1.9989 33 1 2.4454 -2.1020 -4.3129 34 1 3.7959 -2.1447 1.2135 35 1 4.1931 -0.4492 0.7978 36 1 2.9853 0.8627 2.2436 37 1 1.2748 0.5886 2.6524 38 1 2.7626 -1.6599 3.4936 39 1 3.2877 -2.9570 5.1478 40 1 2.0608 1.0541 8.0522 41 1 3.7530 1.0359 8.6041 42 1 3.3621 1.5640 6.9499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092826123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:18 Heat of formation + Delta-G solvation = 42.626862 kcal Electronic energy + Delta-G solvation = -25140.002944 eV Core-core repulsion = 21375.762470 eV Total energy + Delta-G solvation = -3764.240474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.63239 -39.57781 -38.01098 -37.43080 -35.13654 -34.32479 -33.01031 -30.83848 -30.69813 -28.88901 -27.55734 -26.03486 -25.24711 -23.63690 -22.59147 -21.74285 -20.57654 -20.02486 -19.30023 -18.29857 -16.95268 -16.68292 -16.58147 -16.18714 -15.40400 -15.01458 -14.81970 -14.47408 -14.18619 -13.90386 -13.67139 -13.58161 -13.27319 -13.16410 -12.94528 -12.56747 -12.26168 -12.03868 -11.87539 -11.72851 -11.44339 -11.24790 -10.85142 -10.79434 -10.78834 -10.30825 -10.23514 -10.12400 -10.04040 -9.94525 -9.77277 -9.59447 -9.23054 -8.86481 -8.61274 -6.84943 -5.72489 -3.06136 0.78012 0.83127 2.24505 2.29123 3.04228 3.09806 3.39980 3.44461 3.45482 4.21313 4.31462 4.48110 4.58411 4.77491 4.90673 5.02013 5.14001 5.14532 5.27223 5.49392 5.52520 5.55078 5.70253 5.80444 5.95627 5.97651 6.02408 6.14299 6.22705 6.25398 6.29386 6.45099 6.53666 6.58943 6.71077 6.90032 7.21201 7.35196 7.55141 7.61774 7.82227 7.95687 8.24664 9.20794 9.81105 10.46783 11.39034 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.002459 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.785521 B =11381.954810 C =12427.566176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.922 5.922 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.141 3.859 15 C -0.114 4.114 16 H 0.083 0.917 17 C 0.135 3.865 18 N -0.706 5.706 19 C 0.594 3.406 20 O -0.546 6.546 21 C -0.065 4.065 22 C 0.050 3.950 23 N -0.467 5.467 24 C 0.258 3.742 25 Cl 0.041 6.959 26 N -0.413 5.413 27 C 0.059 3.941 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.253 0.747 34 H 0.037 0.963 35 H 0.019 0.981 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.405 0.595 39 H 0.192 0.808 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 4.573 22.733 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.015 3.985 15 C -0.134 4.134 16 H 0.101 0.899 17 C 0.012 3.988 18 N -0.356 5.356 19 C 0.379 3.621 20 O -0.425 6.425 21 C -0.183 4.183 22 C -0.104 4.104 23 N -0.188 5.188 24 C -0.029 4.029 25 Cl 0.069 6.931 26 N -0.096 5.096 27 C -0.083 4.083 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.037 0.963 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.241 0.759 39 H 0.209 0.791 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.267 4.775 23.042 23.641 hybrid contribution 0.495 -0.254 -0.641 0.848 sum -1.773 4.520 22.402 22.922 Atomic orbital electron populations 1.21697 0.95282 1.01514 1.00714 1.22440 0.95165 0.99112 0.96258 0.91376 1.21221 0.89113 0.93122 0.90687 1.44447 1.32624 1.51530 1.04606 1.19003 1.07682 1.17822 0.91275 0.90512 1.24799 0.98407 1.00296 0.96909 1.69947 1.28724 1.45496 1.12757 0.86204 0.79493 0.80525 0.79567 1.21151 1.21618 1.21190 1.21598 0.92891 0.97143 0.86906 1.22706 0.99637 0.98117 0.92903 0.89916 1.21497 1.00293 0.93718 0.83263 1.45718 1.68921 1.12641 1.08366 1.16600 0.77146 0.86453 0.81859 1.90790 1.52426 1.13690 1.85569 1.20861 1.16857 0.95414 0.85121 1.22761 1.01245 0.91667 0.94757 1.70080 1.20263 1.26389 1.02064 1.23234 1.07335 0.83887 0.88435 1.98432 1.95231 1.98089 1.01387 1.45039 1.49759 1.09014 1.05832 1.22469 1.04061 0.78805 1.02943 0.92720 0.93712 0.92663 0.93274 0.94025 0.93700 0.94492 0.96301 0.90891 0.91287 0.75930 0.79112 0.89567 0.89227 0.86613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.13 37.16 0.34 -1.63 16 2 C -0.11 -1.88 3.01 -88.78 -0.27 -2.15 16 3 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 4 C 0.18 4.24 4.97 -3.06 -0.02 4.23 16 5 N -0.61 -14.87 3.39 -170.07 -0.58 -15.44 16 6 C -0.23 -6.25 10.28 -15.06 -0.15 -6.40 16 7 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -26.62 10.31 55.49 0.57 -26.05 16 10 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.14 2.68 6.65 -2.53 -0.02 2.66 16 15 C -0.11 -1.74 2.50 -88.47 -0.22 -1.96 16 16 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 17 C 0.14 1.76 5.14 -4.04 -0.02 1.74 16 18 N -0.71 -8.09 5.49 -61.62 -0.34 -8.43 16 19 C 0.59 7.44 7.78 -12.86 -0.10 7.34 16 20 O -0.55 -8.15 14.82 5.19 0.08 -8.07 16 21 C -0.07 -0.75 6.91 -82.10 -0.57 -1.31 16 22 C 0.05 0.54 11.37 -17.48 -0.20 0.34 16 23 N -0.47 -5.69 11.21 -11.48 -0.13 -5.82 16 24 C 0.26 2.79 8.48 -90.33 -0.77 2.03 16 25 Cl 0.04 0.34 28.79 -51.86 -1.49 -1.15 16 26 N -0.41 -4.34 3.18 -118.35 -0.38 -4.72 16 27 C 0.06 0.45 10.61 59.85 0.63 1.09 16 28 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 1.26 7.06 -51.93 -0.37 0.90 16 32 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 36 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.41 3.89 7.41 -40.82 -0.30 3.59 16 39 H 0.19 1.48 7.46 -52.48 -0.39 1.09 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.49 7.86 -51.93 -0.41 0.08 16 42 H 0.12 1.05 6.27 -51.93 -0.33 0.73 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -32.53 360.87 -9.22 -41.75 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.92 Total: 0.04 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -1.45 Total: 5.65 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.85 Total: -60.46 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.08 Total: -8.07 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.49 Total: -1.15 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.53 -9.22 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092826123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.379 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds