Wall clock time and date at job start Fri Apr 10 2020 18:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.64640 * 2 1 4 4 C 1.54322 * 110.72138 * 236.85317 * 2 1 3 5 5 N 1.47028 * 107.27088 * 219.44490 * 4 2 1 6 6 C 1.36938 * 125.64572 * 178.90316 * 5 4 2 7 7 H 1.07998 * 119.99887 * 180.02562 * 6 5 4 8 8 C 1.38814 * 120.00333 * 0.02854 * 6 5 4 9 9 N 1.31616 * 119.99771 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00248 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46889 * 59.99789 * 10 8 6 12 12 H 1.48495 * 109.47226 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46883 * 300.00258 * 10 8 6 14 14 C 1.47427 * 108.70254 * 358.94369 * 5 4 2 15 15 C 1.54903 * 104.83210 * 24.12566 * 14 5 4 16 16 H 1.08997 * 111.00304 * 81.06928 * 15 14 5 17 17 C 1.53002 * 111.00286 * 204.91945 * 15 14 5 18 18 N 1.46505 * 109.46906 * 287.19549 * 17 15 14 19 19 C 1.34774 * 120.00032 * 180.02562 * 18 17 15 20 20 O 1.21696 * 120.00138 * 354.60302 * 19 18 17 21 21 C 1.46662 * 120.00023 * 174.60306 * 19 18 17 22 22 C 1.36670 * 126.84447 * 5.02504 * 21 19 18 23 23 N 1.33296 * 107.83435 * 179.89577 * 22 21 19 24 24 C 1.31029 * 109.70227 * 0.37636 * 23 22 21 25 25 Cl 1.73602 * 125.43482 * 179.79780 * 24 23 22 26 26 N 1.34600 * 109.12668 * 359.76298 * 24 23 22 27 27 C 1.46503 * 126.48870 * 179.97438 * 26 24 23 28 28 H 1.08998 * 109.46969 * 181.69429 * 1 2 3 29 29 H 1.09003 * 109.46882 * 301.69512 * 1 2 3 30 30 H 1.09002 * 109.46787 * 61.69355 * 1 2 3 31 31 H 1.09001 * 109.88326 * 338.85900 * 4 2 1 32 32 H 1.09003 * 109.88240 * 99.87662 * 4 2 1 33 33 H 0.97002 * 119.99758 * 180.02562 * 9 8 6 34 34 H 1.09002 * 110.36474 * 142.96785 * 14 5 4 35 35 H 1.09002 * 110.35935 * 265.28821 * 14 5 4 36 36 H 1.08993 * 109.47307 * 47.19537 * 17 15 14 37 37 H 1.08998 * 109.47478 * 167.20175 * 17 15 14 38 38 H 0.96995 * 120.00123 * 0.02562 * 18 17 15 39 39 H 1.08005 * 126.07836 * 359.97438 * 22 21 19 40 40 H 1.09003 * 109.47203 * 272.52509 * 27 26 24 41 41 H 1.09003 * 109.46840 * 32.52449 * 27 26 24 42 42 H 1.09000 * 109.47143 * 152.52158 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2085 5 7 3.2445 -1.5496 -0.7414 6 6 4.0035 -2.3956 -1.5052 7 1 4.8455 -2.9103 -1.0665 8 6 3.6906 -2.5917 -2.8434 9 7 2.6642 -1.9647 -3.3779 10 14 4.7263 -3.7453 -3.8854 11 1 4.6839 -5.1107 -3.3033 12 1 4.1878 -3.7806 -5.2689 13 1 6.1302 -3.2620 -3.9123 14 6 3.4632 -1.2509 0.6856 15 6 2.0789 -0.7975 1.2125 16 1 1.4452 -1.6559 1.4348 17 6 2.2277 0.1040 2.4398 18 7 2.6327 -0.7039 3.5929 19 6 2.8248 -0.1186 4.7916 20 8 2.7583 1.0921 4.8953 21 6 3.1141 -0.9408 5.9711 22 6 3.3143 -2.2925 5.9989 23 7 3.5498 -2.6445 7.2627 24 6 3.5002 -1.5855 8.0328 25 17 3.7419 -1.5788 9.7519 26 7 3.2328 -0.5035 7.2781 27 6 3.0932 0.8759 7.7513 28 1 -0.3633 -1.0272 0.0304 29 1 -0.3633 0.5400 0.8744 30 1 -0.3633 0.4873 -0.9048 31 1 1.3130 -1.4733 -1.5799 32 1 2.3716 -0.0993 -1.9989 33 1 2.4454 -2.1020 -4.3129 34 1 3.7959 -2.1447 1.2135 35 1 4.1931 -0.4492 0.7978 36 1 2.9853 0.8627 2.2436 37 1 1.2748 0.5886 2.6524 38 1 2.7626 -1.6599 3.4936 39 1 3.2877 -2.9570 5.1478 40 1 2.0608 1.0541 8.0522 41 1 3.7530 1.0359 8.6041 42 1 3.3621 1.5640 6.9499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092826123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:18 Heat of formation + Delta-G solvation = 21.812351 kcal Electronic energy + Delta-G solvation = -25140.905529 eV Core-core repulsion = 21375.762470 eV Total energy + Delta-G solvation = -3765.143058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.43049 -40.63929 -39.45835 -38.14006 -36.24700 -35.27439 -34.63557 -32.50988 -31.82728 -30.12188 -28.23001 -27.79747 -26.65291 -24.90893 -23.80736 -22.62311 -21.58593 -21.57598 -20.62678 -19.21846 -18.72698 -17.65441 -17.41720 -17.28242 -16.74160 -16.28260 -15.85398 -15.72805 -15.56417 -15.24318 -14.69522 -14.62631 -14.37066 -14.22041 -14.11147 -13.80259 -13.40237 -13.27826 -13.07945 -12.94620 -12.82230 -12.70865 -12.62988 -12.39822 -11.95546 -11.81342 -11.68365 -11.51813 -11.36398 -11.31758 -11.05483 -10.98303 -10.66486 -10.21766 -9.69254 -8.85490 -7.81779 -5.16714 -0.00690 0.03681 1.45013 1.47602 1.48728 1.50283 1.56417 2.14419 2.21091 2.51878 3.36168 3.40196 3.63673 3.67042 3.73972 3.83651 3.97367 3.99276 4.19927 4.22889 4.40446 4.54443 4.55123 4.64141 4.76051 4.81180 4.87676 4.89991 5.01728 5.12664 5.16768 5.21239 5.33900 5.40320 5.50900 5.51100 5.51680 5.75993 5.86194 6.24064 6.35122 6.50246 7.03101 7.14184 7.82424 8.46339 9.28160 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.002459 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.785521 B =11381.954810 C =12427.566176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.075 0.925 4 C 0.191 3.809 5 N -0.629 5.629 6 C -0.240 4.240 7 H 0.083 0.917 8 C -0.068 4.068 9 N -0.951 5.951 10 Si 0.976 3.024 11 H -0.275 1.275 12 H -0.297 1.297 13 H -0.279 1.279 14 C 0.135 3.865 15 C -0.091 4.091 16 H 0.093 0.907 17 C 0.148 3.852 18 N -0.698 5.698 19 C 0.598 3.402 20 O -0.572 6.572 21 C -0.082 4.082 22 C 0.055 3.945 23 N -0.495 5.495 24 C 0.254 3.746 25 Cl 0.061 6.939 26 N -0.414 5.414 27 C 0.055 3.945 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.016 0.984 32 H -0.002 1.002 33 H 0.245 0.755 34 H 0.051 0.949 35 H 0.018 0.982 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.416 0.584 39 H 0.216 0.784 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 4.342 24.956 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.094 0.906 4 C 0.066 3.934 5 N -0.355 5.355 6 C -0.369 4.369 7 H 0.101 0.899 8 C -0.261 4.261 9 N -0.600 5.600 10 Si 0.804 3.196 11 H -0.201 1.201 12 H -0.223 1.223 13 H -0.206 1.206 14 C 0.010 3.990 15 C -0.110 4.110 16 H 0.111 0.889 17 C 0.025 3.975 18 N -0.349 5.349 19 C 0.385 3.615 20 O -0.453 6.453 21 C -0.199 4.199 22 C -0.099 4.099 23 N -0.217 5.217 24 C -0.032 4.032 25 Cl 0.088 6.912 26 N -0.098 5.098 27 C -0.085 4.085 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.016 0.984 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.253 0.747 39 H 0.232 0.768 40 H 0.118 0.882 41 H 0.130 0.870 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.287 4.541 25.311 25.817 hybrid contribution 0.559 -0.168 -1.246 1.376 sum -1.729 4.373 24.065 24.521 Atomic orbital electron populations 1.21647 0.93004 1.01776 1.02109 1.22305 0.96937 0.98600 0.94152 0.90614 1.20986 0.88110 0.91965 0.92388 1.44784 1.32658 1.51191 1.06907 1.19424 1.07899 1.17732 0.91887 0.89922 1.25627 0.99844 1.02289 0.98293 1.70181 1.30367 1.47072 1.12405 0.85193 0.77995 0.78953 0.77448 1.20102 1.22289 1.20563 1.21807 0.95144 0.97700 0.84329 1.22492 0.97067 0.98456 0.93000 0.88853 1.21247 1.00811 0.92896 0.82547 1.45560 1.68590 1.13064 1.07717 1.16663 0.76537 0.86111 0.82179 1.90783 1.53739 1.14828 1.85969 1.20758 1.18302 0.95582 0.85249 1.23207 0.99905 0.91764 0.95073 1.70093 1.21453 1.27291 1.02816 1.23484 1.06567 0.83815 0.89356 1.98439 1.95059 1.98045 0.99611 1.45218 1.49173 1.09800 1.05597 1.22630 1.05489 0.77257 1.03142 0.93160 0.90379 0.93078 0.96617 0.98394 0.94539 0.93104 0.96431 0.91763 0.89911 0.74708 0.76795 0.88247 0.87036 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.13 71.98 0.66 -2.86 16 2 C -0.10 -3.33 3.01 -9.60 -0.03 -3.36 16 3 H 0.08 2.42 8.04 -2.39 -0.02 2.40 16 4 C 0.19 9.10 4.97 86.73 0.43 9.53 16 5 N -0.63 -31.21 3.39 -691.97 -2.35 -33.56 16 6 C -0.24 -13.22 10.28 84.03 0.86 -12.36 16 7 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 8 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 9 N -0.95 -56.98 10.31 21.65 0.22 -56.75 16 10 Si 0.98 45.49 29.55 68.60 2.03 47.51 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 14 C 0.14 4.98 6.65 86.85 0.58 5.56 16 15 C -0.09 -2.58 2.50 -9.40 -0.02 -2.60 16 16 H 0.09 2.53 8.04 -2.39 -0.02 2.51 16 17 C 0.15 3.46 5.14 86.38 0.44 3.90 16 18 N -0.70 -14.21 5.49 -467.09 -2.56 -16.77 16 19 C 0.60 13.81 7.78 86.44 0.67 14.48 16 20 O -0.57 -16.17 14.82 -4.34 -0.06 -16.24 16 21 C -0.08 -1.72 6.91 39.95 0.28 -1.44 16 22 C 0.06 1.07 11.37 84.10 0.96 2.03 16 23 N -0.49 -11.21 11.21 -190.25 -2.13 -13.34 16 24 C 0.25 5.07 8.48 180.25 1.53 6.60 16 25 Cl 0.06 0.89 28.79 -2.72 -0.08 0.81 16 26 N -0.41 -7.99 3.18 -528.36 -1.68 -9.67 16 27 C 0.06 0.76 10.61 127.77 1.36 2.11 16 28 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.02 0.84 7.06 -2.39 -0.02 0.82 16 32 H 0.00 -0.12 7.51 -2.39 -0.02 -0.14 16 33 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.02 0.67 7.91 -2.39 -0.02 0.65 16 36 H 0.06 1.67 7.96 -2.39 -0.02 1.65 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.42 6.78 7.41 -92.71 -0.69 6.09 16 39 H 0.22 2.77 7.46 -2.91 -0.02 2.75 16 40 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.11 0.98 7.86 -2.39 -0.02 0.96 16 42 H 0.10 1.74 6.27 -2.39 -0.01 1.73 16 Total: -1.00 -72.12 360.87 1.92 -70.21 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.36 Total: 9.58 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 8.18 Total: 18.22 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -8.50 Total: -130.10 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.06 Total: -16.24 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 17 Polarization: 0.89 SS G_CDS: -0.08 Total: 0.81 kcal Total: -72.12 1.92 -70.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092826123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.021 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds