Wall clock time and date at job start Fri Apr 10 2020 18:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35507 * 117.00037 * 2 1 4 4 C 1.39437 * 120.46602 * 179.97438 * 3 2 1 5 5 C 1.38198 * 118.50972 * 180.02562 * 4 3 2 6 6 N 1.32457 * 119.26860 * 359.97438 * 5 4 3 7 7 C 1.32464 * 120.88765 * 0.02562 * 6 5 4 8 8 N 1.38403 * 119.19105 * 179.72261 * 7 6 5 9 9 C 1.46498 * 120.00053 * 180.02562 * 8 7 6 10 10 C 1.46503 * 119.99562 * 0.02562 * 8 7 6 11 11 C 1.52994 * 109.47072 * 89.99975 * 10 8 7 12 12 N 1.46498 * 109.47070 * 179.97438 * 11 10 8 13 13 C 1.34776 * 120.00414 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99449 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00228 * 179.97438 * 13 12 11 16 16 S 1.81007 * 109.46989 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99769 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99907 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99845 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00066 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99880 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47262 * 89.99661 * 21 19 17 23 23 H 1.48503 * 109.46916 * 209.99152 * 21 19 17 24 24 H 1.48493 * 109.47055 * 329.99205 * 21 19 17 25 25 N 1.32484 * 121.62496 * 0.02562 * 7 6 5 26 26 H 1.08999 * 109.47408 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47171 * 299.99610 * 1 2 3 28 28 H 1.09010 * 109.47174 * 59.99653 * 1 2 3 29 29 H 1.08003 * 120.74622 * 0.02562 * 4 3 2 30 30 H 1.08003 * 120.36789 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47474 * 89.99890 * 9 8 7 32 32 H 1.09002 * 109.46948 * 209.99970 * 9 8 7 33 33 H 1.08995 * 109.47228 * 329.99583 * 9 8 7 34 34 H 1.09003 * 109.46675 * 209.99890 * 10 8 7 35 35 H 1.09003 * 109.47143 * 329.99466 * 10 8 7 36 36 H 1.08998 * 109.47298 * 300.00006 * 11 10 8 37 37 H 1.08998 * 109.47115 * 59.99899 * 11 10 8 38 38 H 0.97004 * 119.99966 * 0.02562 * 12 11 10 39 39 H 1.08998 * 109.47488 * 300.00266 * 15 13 12 40 40 H 1.09008 * 109.46626 * 60.00592 * 15 13 12 41 41 H 0.97001 * 119.99825 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4360 1.2917 0.0005 5 6 4.0210 2.5437 0.0011 6 7 3.2483 3.6196 0.0005 7 6 1.9283 3.5087 0.0000 8 7 1.1546 4.6562 0.0053 9 6 -0.3069 4.5543 0.0054 10 6 1.7971 5.9728 0.0108 11 6 2.0203 6.4374 -1.4297 12 7 2.6622 7.7542 -1.4242 13 6 2.9568 8.3653 -2.5888 14 8 2.6900 7.8251 -3.6414 15 6 3.6167 9.7201 -2.5831 16 16 3.8808 10.2698 -4.2873 17 6 4.6425 11.8307 -3.9907 18 1 4.8090 12.1666 -2.9779 19 6 5.0295 12.6281 -5.0588 20 7 5.5981 13.7944 -4.8373 21 14 4.7421 12.0468 -6.8107 22 1 3.4077 12.5067 -7.2723 23 1 5.7931 12.6081 -7.6971 24 1 4.7973 10.5635 -6.8553 25 7 1.3305 2.3264 0.0005 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 4.0433 0.3985 0.0005 30 1 5.0964 2.6439 0.0011 31 1 -0.6690 4.5245 1.0330 32 1 -0.7314 5.4191 -0.5045 33 1 -0.6076 3.6435 -0.5124 34 1 1.1567 6.6874 0.5280 35 1 2.7565 5.9068 0.5241 36 1 2.6605 5.7229 -1.9469 37 1 1.0609 6.5035 -1.9429 38 1 2.8753 8.1864 -0.5823 39 1 2.9759 10.4342 -2.0658 40 1 4.5762 9.6547 -2.0699 41 1 5.8682 14.3519 -5.5838 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099937559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:31 Heat of formation + Delta-G solvation = -4.860171 kcal Electronic energy + Delta-G solvation = -24116.112659 eV Core-core repulsion = 20351.856700 eV Total energy + Delta-G solvation = -3764.255959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.46116 -39.39272 -38.96023 -37.21251 -34.62321 -33.39814 -32.43005 -31.53328 -30.44254 -28.61017 -27.95384 -26.44455 -25.60255 -24.12595 -23.62779 -21.83279 -20.52702 -18.89425 -18.28551 -17.85498 -16.76398 -16.64441 -16.31160 -16.18174 -15.63665 -15.44870 -15.27046 -15.07407 -14.89842 -14.51065 -14.16557 -13.89335 -13.75477 -13.68802 -13.24076 -12.79045 -12.52937 -12.42467 -12.33339 -12.19828 -12.03659 -11.45287 -11.25818 -11.18180 -10.99982 -10.85905 -10.60360 -9.91316 -9.84210 -9.56767 -9.52063 -9.01645 -8.95924 -8.48866 -8.27183 -6.90781 -6.28082 -3.99674 0.89279 0.97107 2.11610 2.60463 2.81947 2.99317 3.33021 3.37371 3.51776 3.58906 3.69388 3.81153 4.26584 4.34188 4.62149 4.65612 4.69799 4.77692 4.81801 4.85964 4.90635 5.02672 5.11001 5.12760 5.14608 5.20107 5.22515 5.34758 5.44996 5.62774 5.74384 5.79110 5.91386 6.02598 6.31339 6.49767 6.56825 6.64988 7.09400 7.60213 7.95012 7.95457 8.42504 8.50172 9.18199 10.81086 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.027153 B = 0.002009 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.963893 B =13931.925817 C =14113.159531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.302 6.302 3 C 0.400 3.600 4 C -0.306 4.306 5 C 0.218 3.782 6 N -0.583 5.583 7 C 0.599 3.401 8 N -0.582 5.582 9 C 0.101 3.899 10 C 0.123 3.877 11 C 0.109 3.891 12 N -0.734 5.734 13 C 0.532 3.468 14 O -0.519 6.519 15 C -0.123 4.123 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 N -0.622 5.622 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.148 0.852 30 H 0.176 0.824 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.400 0.600 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.265 -25.862 15.753 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.205 6.205 3 C 0.212 3.788 4 C -0.332 4.332 5 C 0.053 3.947 6 N -0.309 5.309 7 C 0.244 3.756 8 N -0.298 5.298 9 C -0.042 4.042 10 C -0.001 4.001 11 C -0.017 4.017 12 N -0.389 5.389 13 C 0.318 3.682 14 O -0.394 6.394 15 C -0.274 4.274 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 N -0.361 5.361 26 H 0.117 0.883 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.166 0.834 30 H 0.193 0.807 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.234 0.766 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.245 -25.957 13.922 31.528 hybrid contribution 0.577 0.164 0.818 1.015 sum -10.667 -25.793 14.741 31.565 Atomic orbital electron populations 1.22928 0.76778 1.03250 1.02729 1.86262 1.23364 1.24151 1.86750 1.19752 0.89248 0.83920 0.85907 1.21599 0.92458 1.01089 1.18087 1.22801 1.00150 0.85855 0.85851 1.67984 1.03806 1.34150 1.24985 1.18788 0.85336 0.84728 0.86770 1.45864 1.05374 1.01805 1.76754 1.21681 0.77281 1.03447 1.01788 1.21595 0.99965 0.82096 0.96450 1.21597 0.98339 0.84847 0.96944 1.45776 1.64173 1.19950 1.08977 1.20274 0.77948 0.86754 0.83263 1.90706 1.51875 1.65950 1.30828 1.23273 1.03472 0.95559 1.05070 1.84809 1.79831 1.23883 1.03124 1.22318 1.45290 1.01585 0.97653 0.89354 1.24714 0.93374 0.93944 0.99308 1.69939 1.39167 1.10096 1.32487 0.86734 0.78920 0.82052 0.84142 1.19231 1.19951 1.15921 1.67347 1.41286 0.97901 1.29577 0.88343 0.92068 0.92018 0.83383 0.80742 0.92771 0.90863 0.90255 0.89657 0.88433 0.91214 0.91804 0.76611 0.88446 0.88348 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.41 101.05 1.05 1.28 16 2 O -0.30 -2.71 10.49 -18.22 -0.19 -2.90 16 3 C 0.40 4.05 7.53 -16.72 -0.13 3.93 16 4 C -0.31 -2.63 10.12 -39.15 -0.40 -3.03 16 5 C 0.22 1.90 11.29 -17.30 -0.20 1.70 16 6 N -0.58 -6.46 9.11 -14.00 -0.13 -6.58 16 7 C 0.60 6.70 8.18 -322.86 -2.64 4.06 16 8 N -0.58 -5.49 2.97 -183.95 -0.55 -6.04 16 9 C 0.10 0.72 10.44 59.85 0.62 1.34 16 10 C 0.12 1.05 5.52 -4.04 -0.02 1.03 16 11 C 0.11 1.27 6.00 -4.05 -0.02 1.24 16 12 N -0.73 -9.21 5.56 -60.30 -0.33 -9.55 16 13 C 0.53 9.50 7.85 -10.99 -0.09 9.41 16 14 O -0.52 -11.47 15.86 5.55 0.09 -11.38 16 15 C -0.12 -2.37 6.16 36.01 0.22 -2.14 16 16 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 17 C -0.52 -15.03 10.04 30.94 0.31 -14.71 16 18 H 0.09 2.65 8.03 -52.48 -0.42 2.22 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 21 Si 0.86 21.90 27.74 -169.99 -4.71 17.18 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 25 N -0.62 -6.71 8.05 -13.99 -0.11 -6.82 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.37 8.12 -51.93 -0.42 -0.06 16 28 H 0.06 0.39 8.12 -51.92 -0.42 -0.03 16 29 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 30 H 0.18 0.94 8.06 -52.48 -0.42 0.52 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.43 8.07 -51.93 -0.42 0.02 16 33 H 0.08 0.61 7.34 -51.93 -0.38 0.22 16 34 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 35 H 0.10 0.87 7.33 -51.93 -0.38 0.49 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 3.68 8.47 -40.82 -0.35 3.33 16 39 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 40 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 41 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -36.76 369.10 -8.72 -45.48 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.75 Total: -0.31 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -1.38 Total: 6.81 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.35 Total: -54.80 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.10 Total: -14.29 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.76 -8.72 -45.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099937559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.624 kcal (2) G-P(sol) polarization free energy of solvation -36.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds