Wall clock time and date at job start Fri Apr 10 2020 18:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.30756 * 2 1 4 4 C 1.54387 * 110.34395 * 237.71518 * 2 1 3 5 5 N 1.48152 * 104.61842 * 264.99875 * 4 2 1 6 6 C 1.34768 * 127.83875 * 140.39027 * 5 4 2 7 7 O 1.21705 * 119.99938 * 180.18355 * 6 5 4 8 8 C 1.46658 * 120.00341 * 0.19149 * 6 5 4 9 9 C 1.36671 * 126.84354 * 12.14715 * 8 6 5 10 10 N 1.33298 * 107.83536 * 179.89910 * 9 8 6 11 11 C 1.31029 * 109.70082 * 0.38127 * 10 9 8 12 12 Cl 1.73602 * 125.43302 * 179.78242 * 11 10 9 13 13 N 1.34598 * 109.12838 * 359.76166 * 11 10 9 14 14 C 1.46498 * 126.48916 * 180.02562 * 13 11 10 15 15 C 1.48152 * 104.31805 * 320.41034 * 5 4 2 16 16 C 1.54282 * 110.34403 * 122.17613 * 2 1 3 17 17 H 1.09009 * 110.34437 * 0.02562 * 16 2 1 18 18 C 1.52997 * 110.34550 * 237.74053 * 16 2 1 19 19 N 1.46503 * 109.47182 * 174.99901 * 18 16 2 20 20 C 1.36938 * 119.99961 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00040 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00181 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99696 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00279 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47323 * 59.99552 * 24 22 20 26 26 H 1.48496 * 109.47249 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46811 * 299.99872 * 24 22 20 28 28 H 1.09003 * 109.46705 * 297.82538 * 1 2 3 29 29 H 1.08992 * 109.46946 * 57.82109 * 1 2 3 30 30 H 1.08996 * 109.46714 * 177.82633 * 1 2 3 31 31 H 1.09004 * 110.40842 * 23.77724 * 4 2 1 32 32 H 1.08997 * 110.40900 * 146.09196 * 4 2 1 33 33 H 1.08009 * 126.07929 * 0.02562 * 9 8 6 34 34 H 1.09000 * 109.47180 * 274.46099 * 14 13 11 35 35 H 1.08994 * 109.47341 * 34.45712 * 14 13 11 36 36 H 1.09002 * 109.47193 * 154.46668 * 14 13 11 37 37 H 1.08995 * 110.40770 * 280.80119 * 15 5 4 38 38 H 1.09001 * 110.40205 * 158.37018 * 15 5 4 39 39 H 1.08997 * 109.47426 * 294.99987 * 18 16 2 40 40 H 1.08999 * 109.47204 * 55.00035 * 18 16 2 41 41 H 0.97003 * 120.00218 * 359.97438 * 19 18 16 42 42 H 0.97001 * 119.99906 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0668 -0.7732 -1.2238 5 7 2.3139 -2.1446 -0.7206 6 6 2.0770 -3.3118 -1.3513 7 8 2.3335 -4.3652 -0.7984 8 6 1.5102 -3.3126 -2.7039 9 6 1.3841 -2.2391 -3.5403 10 7 0.8234 -2.6666 -4.6716 11 6 0.5826 -3.9518 -4.5871 12 17 -0.1461 -4.9230 -5.8278 13 7 0.9910 -4.3989 -3.3850 14 6 0.9028 -5.7755 -2.8916 15 6 2.8802 -1.9416 0.6332 16 6 2.0664 -0.7703 1.2244 17 1 1.2398 -1.1492 1.8257 18 6 2.9692 0.1326 2.0673 19 7 3.3711 -0.5775 3.2841 20 6 4.1857 0.0364 4.1977 21 1 4.5316 1.0441 4.0214 22 6 4.5669 -0.6366 5.3503 23 7 4.1449 -1.8647 5.5654 24 14 5.6776 0.2010 6.5970 25 1 5.0160 1.4310 7.1018 26 1 5.9357 -0.7235 7.7300 27 1 6.9647 0.5614 5.9497 28 1 -0.3633 0.4797 0.9089 29 1 -0.3633 0.5473 -0.8697 30 1 -0.3632 -1.0269 -0.0390 31 1 1.3223 -0.7889 -2.0199 32 1 2.9938 -0.3243 -1.5803 33 1 1.6871 -1.2252 -3.3240 34 1 -0.0797 -5.9407 -2.4493 35 1 1.0494 -6.4685 -3.7199 36 1 1.6728 -5.9415 -2.1382 37 1 3.9354 -1.6765 0.5680 38 1 2.7495 -2.8388 1.2382 39 1 3.8561 0.3984 1.4921 40 1 2.4266 1.0384 2.3377 41 1 3.0595 -1.4823 3.4429 42 1 4.4115 -2.3351 6.3707 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106423238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:45 Heat of formation + Delta-G solvation = 50.334581 kcal Electronic energy + Delta-G solvation = -25514.148694 eV Core-core repulsion = 21750.242452 eV Total energy + Delta-G solvation = -3763.906242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.66068 -39.98671 -37.95340 -37.41866 -34.91876 -34.41832 -32.87329 -31.50097 -30.58017 -28.76830 -27.59768 -26.73379 -25.65198 -23.73672 -22.57170 -21.95093 -21.17983 -19.82831 -19.71342 -17.78148 -17.10663 -16.91962 -16.57200 -15.98963 -15.73935 -14.99939 -14.70108 -14.56722 -14.22863 -14.08160 -13.56988 -13.51139 -13.31163 -13.14955 -13.08899 -12.94276 -12.42112 -12.25183 -12.09274 -11.95232 -11.66505 -11.31976 -11.16115 -10.86630 -10.73704 -10.61321 -10.55680 -10.36406 -10.24149 -10.06479 -10.01303 -9.68217 -9.00254 -8.89387 -8.72078 -6.94868 -5.77363 -3.06884 0.78672 0.86255 2.20187 2.29698 2.93831 3.04849 3.43577 3.47981 3.49185 4.08729 4.31847 4.43519 4.49809 4.57114 4.78653 4.80851 4.81102 4.90947 5.17039 5.27335 5.34682 5.44153 5.51700 5.54197 5.57301 5.70075 5.72733 5.91055 5.97248 6.00415 6.07546 6.14535 6.17238 6.26887 6.35228 6.44116 6.67942 6.79925 7.24514 7.40148 7.68118 7.94655 8.40937 9.52163 10.08912 10.43000 11.45200 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.002494 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.614364 B =11226.222504 C =11903.202191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.093 0.907 4 C 0.083 3.917 5 N -0.604 5.604 6 C 0.611 3.389 7 O -0.541 6.541 8 C -0.056 4.056 9 C 0.032 3.968 10 N -0.468 5.468 11 C 0.257 3.743 12 Cl 0.041 6.959 13 N -0.412 5.412 14 C 0.055 3.945 15 C 0.120 3.880 16 C -0.103 4.103 17 H 0.084 0.916 18 C 0.163 3.837 19 N -0.733 5.733 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.201 0.799 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.022 0.978 40 H 0.024 0.976 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.749 -3.138 -22.430 24.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.111 0.889 4 C -0.039 4.039 5 N -0.336 5.336 6 C 0.399 3.601 7 O -0.420 6.420 8 C -0.173 4.173 9 C -0.121 4.121 10 N -0.189 5.189 11 C -0.030 4.030 12 Cl 0.068 6.932 13 N -0.096 5.096 14 C -0.086 4.086 15 C -0.002 4.002 16 C -0.123 4.123 17 H 0.102 0.898 18 C 0.035 3.965 19 N -0.378 5.378 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.217 0.783 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.218 0.782 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.782 -3.509 -22.816 25.071 hybrid contribution 0.573 -0.550 1.292 1.516 sum -9.209 -4.059 -21.524 23.761 Atomic orbital electron populations 1.21841 0.94352 1.01759 1.02000 1.22122 0.96285 0.99835 0.93721 0.88892 1.23089 1.01430 0.81613 0.97810 1.48602 1.61996 1.04707 1.18331 1.16092 0.78291 0.83017 0.82674 1.90820 1.54060 1.30054 1.67086 1.20762 1.11588 0.87881 0.97090 1.23332 1.00754 0.99243 0.88777 1.70103 1.17880 1.06192 1.24731 1.23233 1.04422 0.90245 0.85063 1.98431 1.79875 1.67337 1.47526 1.45038 1.42956 1.09973 1.11617 1.22516 1.06040 0.77590 1.02457 1.22553 0.97671 0.99534 0.80397 1.22417 0.98926 0.95365 0.95605 0.89764 1.20729 0.94402 0.93447 0.87897 1.42373 1.59165 1.16607 1.19629 1.19157 1.21656 0.97828 0.98672 0.91207 1.24751 1.01109 0.96433 0.98596 1.69650 1.49177 1.11252 1.27981 0.86270 0.80571 0.78275 0.81061 1.21270 1.21712 1.21257 0.91936 0.92606 0.92900 0.89010 0.89991 0.78262 0.89531 0.89131 0.86354 0.89892 0.89426 0.95980 0.95838 0.78229 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.90 37.16 0.33 -1.08 16 2 C -0.10 -1.07 3.31 -89.22 -0.30 -1.36 16 3 H 0.09 0.91 7.71 -51.93 -0.40 0.50 16 4 C 0.08 0.81 5.44 -2.41 -0.01 0.79 16 5 N -0.60 -7.91 3.32 -170.84 -0.57 -8.48 16 6 C 0.61 8.78 7.86 -12.87 -0.10 8.68 16 7 O -0.54 -9.36 15.09 5.18 0.08 -9.28 16 8 C -0.06 -0.69 6.84 -82.10 -0.56 -1.25 16 9 C 0.03 0.36 10.24 -17.48 -0.18 0.18 16 10 N -0.47 -5.69 11.21 -11.48 -0.13 -5.82 16 11 C 0.26 2.85 8.48 -90.34 -0.77 2.09 16 12 Cl 0.04 0.34 28.84 -51.86 -1.50 -1.15 16 13 N -0.41 -4.64 3.18 -118.36 -0.38 -5.02 16 14 C 0.06 0.48 10.70 59.85 0.64 1.12 16 15 C 0.12 1.83 6.41 -2.40 -0.02 1.81 16 16 C -0.10 -1.51 2.75 -89.22 -0.24 -1.76 16 17 H 0.08 1.34 7.71 -51.92 -0.40 0.94 16 18 C 0.16 2.99 5.38 -4.04 -0.02 2.97 16 19 N -0.73 -17.81 5.48 -59.91 -0.33 -18.13 16 20 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 24 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.74 4.31 -51.93 -0.22 0.52 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.20 1.65 5.00 -52.48 -0.26 1.39 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.56 7.93 -51.93 -0.41 0.15 16 36 H 0.12 1.24 6.12 -51.93 -0.32 0.92 16 37 H 0.08 1.33 7.75 -51.93 -0.40 0.92 16 38 H 0.09 1.55 7.88 -51.93 -0.41 1.14 16 39 H 0.02 0.40 7.98 -51.93 -0.41 -0.01 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.38 9.91 7.61 -40.82 -0.31 9.60 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -33.01 357.84 -8.83 -41.84 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.64 Total: 5.80 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.47 Total: 4.96 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: -0.68 Total: -64.73 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.50 Total: -1.15 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.01 -8.83 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106423238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.177 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds