Wall clock time and date at job start Fri Apr 10 2020 18:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.30756 * 2 1 4 4 C 1.54387 * 110.34395 * 237.71518 * 2 1 3 5 5 N 1.48152 * 104.61842 * 264.99875 * 4 2 1 6 6 C 1.34768 * 127.83875 * 140.39027 * 5 4 2 7 7 O 1.21705 * 119.99938 * 180.18355 * 6 5 4 8 8 C 1.46658 * 120.00341 * 0.19149 * 6 5 4 9 9 C 1.36671 * 126.84354 * 12.14715 * 8 6 5 10 10 N 1.33298 * 107.83536 * 179.89910 * 9 8 6 11 11 C 1.31029 * 109.70082 * 0.38127 * 10 9 8 12 12 Cl 1.73602 * 125.43302 * 179.78242 * 11 10 9 13 13 N 1.34598 * 109.12838 * 359.76166 * 11 10 9 14 14 C 1.46498 * 126.48916 * 180.02562 * 13 11 10 15 15 C 1.48152 * 104.31805 * 320.41034 * 5 4 2 16 16 C 1.54282 * 110.34403 * 122.17613 * 2 1 3 17 17 H 1.09009 * 110.34437 * 0.02562 * 16 2 1 18 18 C 1.52997 * 110.34550 * 237.74053 * 16 2 1 19 19 N 1.46503 * 109.47182 * 174.99901 * 18 16 2 20 20 C 1.36938 * 119.99961 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00040 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00181 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99696 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00279 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47323 * 59.99552 * 24 22 20 26 26 H 1.48496 * 109.47249 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46811 * 299.99872 * 24 22 20 28 28 H 1.09003 * 109.46705 * 297.82538 * 1 2 3 29 29 H 1.08992 * 109.46946 * 57.82109 * 1 2 3 30 30 H 1.08996 * 109.46714 * 177.82633 * 1 2 3 31 31 H 1.09004 * 110.40842 * 23.77724 * 4 2 1 32 32 H 1.08997 * 110.40900 * 146.09196 * 4 2 1 33 33 H 1.08009 * 126.07929 * 0.02562 * 9 8 6 34 34 H 1.09000 * 109.47180 * 274.46099 * 14 13 11 35 35 H 1.08994 * 109.47341 * 34.45712 * 14 13 11 36 36 H 1.09002 * 109.47193 * 154.46668 * 14 13 11 37 37 H 1.08995 * 110.40770 * 280.80119 * 15 5 4 38 38 H 1.09001 * 110.40205 * 158.37018 * 15 5 4 39 39 H 1.08997 * 109.47426 * 294.99987 * 18 16 2 40 40 H 1.08999 * 109.47204 * 55.00035 * 18 16 2 41 41 H 0.97003 * 120.00218 * 359.97438 * 19 18 16 42 42 H 0.97001 * 119.99906 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0668 -0.7732 -1.2238 5 7 2.3139 -2.1446 -0.7206 6 6 2.0770 -3.3118 -1.3513 7 8 2.3335 -4.3652 -0.7984 8 6 1.5102 -3.3126 -2.7039 9 6 1.3841 -2.2391 -3.5403 10 7 0.8234 -2.6666 -4.6716 11 6 0.5826 -3.9518 -4.5871 12 17 -0.1461 -4.9230 -5.8278 13 7 0.9910 -4.3989 -3.3850 14 6 0.9028 -5.7755 -2.8916 15 6 2.8802 -1.9416 0.6332 16 6 2.0664 -0.7703 1.2244 17 1 1.2398 -1.1492 1.8257 18 6 2.9692 0.1326 2.0673 19 7 3.3711 -0.5775 3.2841 20 6 4.1857 0.0364 4.1977 21 1 4.5316 1.0441 4.0214 22 6 4.5669 -0.6366 5.3503 23 7 4.1449 -1.8647 5.5654 24 14 5.6776 0.2010 6.5970 25 1 5.0160 1.4310 7.1018 26 1 5.9357 -0.7235 7.7300 27 1 6.9647 0.5614 5.9497 28 1 -0.3633 0.4797 0.9089 29 1 -0.3633 0.5473 -0.8697 30 1 -0.3632 -1.0269 -0.0390 31 1 1.3223 -0.7889 -2.0199 32 1 2.9938 -0.3243 -1.5803 33 1 1.6871 -1.2252 -3.3240 34 1 -0.0797 -5.9407 -2.4493 35 1 1.0494 -6.4685 -3.7199 36 1 1.6728 -5.9415 -2.1382 37 1 3.9354 -1.6765 0.5680 38 1 2.7495 -2.8388 1.2382 39 1 3.8561 0.3984 1.4921 40 1 2.4266 1.0384 2.3377 41 1 3.0595 -1.4823 3.4429 42 1 4.4115 -2.3351 6.3707 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106423238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:44 Heat of formation + Delta-G solvation = 28.971842 kcal Electronic energy + Delta-G solvation = -25515.075052 eV Core-core repulsion = 21750.242452 eV Total energy + Delta-G solvation = -3764.832600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.52470 -41.06665 -39.10560 -38.16621 -36.49875 -35.39954 -34.18250 -33.00929 -31.75111 -30.13200 -28.37299 -27.59935 -27.13068 -25.31255 -23.80121 -22.83615 -22.40368 -20.96885 -20.67627 -19.17860 -18.48364 -17.94909 -17.51759 -17.10614 -16.85594 -16.41398 -15.89749 -15.68528 -15.42064 -15.23789 -15.11890 -14.69097 -14.31779 -14.27036 -14.10231 -13.88298 -13.70486 -13.29706 -13.02797 -12.93908 -12.80070 -12.70646 -12.58893 -12.44502 -12.16424 -11.94017 -11.78090 -11.63744 -11.53287 -11.36345 -11.16209 -11.03789 -10.89610 -9.98651 -9.69750 -8.96884 -7.92495 -5.21183 -0.05832 0.00009 1.31792 1.41008 1.48789 1.51760 1.57739 1.99336 2.03519 2.58086 3.16458 3.41510 3.52499 3.56033 3.61772 3.71303 3.84553 4.00294 4.15858 4.23704 4.28568 4.39308 4.46588 4.52906 4.55244 4.65345 4.75018 4.81557 4.87237 4.91100 5.04296 5.07810 5.14907 5.24830 5.32152 5.32692 5.46096 5.52182 5.55724 6.29376 6.34346 6.40299 6.86226 7.35655 8.12836 8.33688 9.31031 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.002494 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.614364 B =11226.222504 C =11903.202191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.114 0.886 4 C 0.083 3.917 5 N -0.602 5.602 6 C 0.608 3.392 7 O -0.583 6.583 8 C -0.079 4.079 9 C 0.049 3.951 10 N -0.487 5.487 11 C 0.258 3.742 12 Cl 0.064 6.936 13 N -0.416 5.416 14 C 0.053 3.947 15 C 0.125 3.875 16 C -0.093 4.093 17 H 0.066 0.934 18 C 0.163 3.837 19 N -0.748 5.748 20 C -0.241 4.241 21 H 0.080 0.920 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.973 3.027 25 H -0.276 1.276 26 H -0.300 1.300 27 H -0.277 1.277 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.227 0.773 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.371 0.629 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.239 -1.163 -24.722 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.133 0.867 4 C -0.038 4.038 5 N -0.333 5.333 6 C 0.397 3.603 7 O -0.465 6.465 8 C -0.196 4.196 9 C -0.105 4.105 10 N -0.209 5.209 11 C -0.029 4.029 12 Cl 0.091 6.909 13 N -0.100 5.100 14 C -0.088 4.088 15 C 0.003 3.997 16 C -0.113 4.113 17 H 0.085 0.915 18 C 0.037 3.963 19 N -0.391 5.391 20 C -0.373 4.373 21 H 0.098 0.902 22 C -0.271 4.271 23 N -0.623 5.623 24 Si 0.802 3.198 25 H -0.202 1.202 26 H -0.226 1.226 27 H -0.203 1.203 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.243 0.757 34 H 0.117 0.883 35 H 0.134 0.866 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.203 0.797 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.287 -1.477 -25.157 27.219 hybrid contribution 0.669 -1.174 1.892 2.325 sum -9.618 -2.651 -23.266 25.314 Atomic orbital electron populations 1.21824 0.93517 1.01276 1.03024 1.22130 0.96892 1.00319 0.91652 0.86749 1.23374 1.03350 0.79301 0.97792 1.48594 1.61330 1.05981 1.17375 1.16411 0.77832 0.82647 0.83361 1.90798 1.55869 1.31577 1.68273 1.20533 1.13484 0.89057 0.96505 1.23758 0.99086 0.99863 0.87817 1.70154 1.18803 1.06748 1.25191 1.23530 1.03602 0.90470 0.85281 1.98442 1.79363 1.66671 1.46391 1.45199 1.42619 1.10483 1.11649 1.22630 1.05998 0.77149 1.03005 1.22279 0.97592 0.98327 0.81541 1.22235 0.97488 0.94959 0.96599 0.91532 1.20918 0.95362 0.93783 0.86286 1.42641 1.58875 1.16408 1.21175 1.19623 1.20757 0.98067 0.98838 0.90192 1.25588 1.03388 0.97202 1.00957 1.69825 1.51210 1.12920 1.28389 0.85218 0.79003 0.77218 0.78362 1.20223 1.22606 1.20307 0.92591 0.89771 0.94304 0.86711 0.87523 0.75679 0.88314 0.86616 0.88443 0.90620 0.92960 0.94906 0.95035 0.79723 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.90 71.98 0.64 -1.76 16 2 C -0.09 -1.69 3.31 -9.89 -0.03 -1.73 16 3 H 0.11 1.75 7.71 -2.39 -0.02 1.73 16 4 C 0.08 1.36 5.44 86.53 0.47 1.83 16 5 N -0.60 -15.44 3.32 -812.64 -2.69 -18.13 16 6 C 0.61 17.59 7.86 86.44 0.68 18.27 16 7 O -0.58 -21.20 15.09 -4.37 -0.07 -21.27 16 8 C -0.08 -1.87 6.84 39.95 0.27 -1.60 16 9 C 0.05 0.95 10.24 84.10 0.86 1.81 16 10 N -0.49 -10.69 11.21 -190.24 -2.13 -12.82 16 11 C 0.26 5.25 8.48 180.25 1.53 6.78 16 12 Cl 0.06 0.94 28.84 -2.72 -0.08 0.86 16 13 N -0.42 -8.92 3.18 -528.39 -1.68 -10.60 16 14 C 0.05 0.89 10.70 127.77 1.37 2.26 16 15 C 0.12 3.93 6.41 86.53 0.55 4.49 16 16 C -0.09 -2.69 2.75 -9.89 -0.03 -2.72 16 17 H 0.07 2.18 7.71 -2.38 -0.02 2.16 16 18 C 0.16 5.83 5.38 86.38 0.46 6.30 16 19 N -0.75 -36.87 5.48 -343.45 -1.88 -38.75 16 20 C -0.24 -13.17 9.99 84.03 0.84 -12.33 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 22 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 23 N -0.97 -60.16 13.06 21.65 0.28 -59.87 16 24 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.12 1.39 4.31 -2.38 -0.01 1.38 16 32 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.23 2.84 5.00 -2.91 -0.01 2.83 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.12 1.29 7.93 -2.39 -0.02 1.27 16 36 H 0.10 2.13 6.12 -2.39 -0.01 2.12 16 37 H 0.08 2.47 7.75 -2.39 -0.02 2.45 16 38 H 0.05 2.00 7.88 -2.39 -0.02 1.98 16 39 H 0.03 1.13 7.98 -2.39 -0.02 1.12 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.37 19.96 7.61 -92.71 -0.71 19.26 16 42 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -73.39 357.84 2.22 -71.17 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.35 Total: 23.92 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 8.09 Total: 17.51 kcal Atomic # 7 Polarization: -132.07 SS G_CDS: -8.11 Total: -140.18 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.07 Total: -21.27 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 17 Polarization: 0.94 SS G_CDS: -0.08 Total: 0.86 kcal Total: -73.39 2.22 -71.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106423238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.140 kcal (2) G-P(sol) polarization free energy of solvation -73.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds