Wall clock time and date at job start Fri Apr 10 2020 18:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.29723 * 2 1 4 4 C 1.54005 * 110.32824 * 237.86432 * 2 1 3 5 5 N 1.47482 * 107.08617 * 242.31677 * 4 2 1 6 6 C 1.34782 * 127.03782 * 154.51548 * 5 4 2 7 7 O 1.21604 * 120.00457 * 185.55203 * 6 5 4 8 8 C 1.47385 * 119.99664 * 5.55143 * 6 5 4 9 9 C 1.38072 * 126.42303 * 24.28505 * 8 6 5 10 10 N 1.34228 * 107.43751 * 179.77099 * 9 8 6 11 11 C 1.46506 * 125.73848 * 180.22988 * 10 9 8 12 12 N 1.39924 * 108.52566 * 0.21995 * 10 9 8 13 13 C 1.30528 * 108.89438 * 0.02562 * 12 10 9 14 14 Cl 1.73607 * 126.00576 * 180.02562 * 13 12 10 15 15 C 1.48119 * 105.93371 * 334.77542 * 5 4 2 16 16 C 1.54604 * 103.41895 * 39.02448 * 15 5 4 17 17 H 1.09001 * 110.57294 * 81.17408 * 16 15 5 18 18 C 1.52999 * 110.98848 * 204.37354 * 16 15 5 19 19 N 1.46502 * 109.47121 * 288.65854 * 18 16 15 20 20 C 1.36938 * 119.99902 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99987 * 359.97438 * 20 19 18 22 22 C 1.38809 * 120.00156 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99756 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00245 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47414 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47106 * 120.00026 * 24 22 20 27 27 H 1.48507 * 109.47358 * 239.99834 * 24 22 20 28 28 H 1.08992 * 109.47492 * 180.67694 * 1 2 3 29 29 H 1.09003 * 109.46906 * 300.68152 * 1 2 3 30 30 H 1.08998 * 109.46837 * 60.67783 * 1 2 3 31 31 H 1.08994 * 109.91703 * 122.95181 * 4 2 1 32 32 H 1.09006 * 109.91178 * 1.67235 * 4 2 1 33 33 H 1.08003 * 126.28297 * 0.02562 * 9 8 6 34 34 H 1.08993 * 109.47318 * 89.99374 * 11 10 9 35 35 H 1.09000 * 109.46777 * 209.99535 * 11 10 9 36 36 H 1.09007 * 109.46594 * 329.99027 * 11 10 9 37 37 H 1.08995 * 110.66796 * 157.50751 * 15 5 4 38 38 H 1.08998 * 110.66177 * 280.62777 * 15 5 4 39 39 H 1.09006 * 109.46728 * 48.65063 * 18 16 15 40 40 H 1.08992 * 109.47419 * 168.65350 * 18 16 15 41 41 H 0.96996 * 119.99948 * 359.97438 * 19 18 16 42 42 H 0.97006 * 120.00036 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 6 2.0650 -0.7682 -1.2229 5 7 2.8297 -1.9204 -0.7103 6 6 3.0644 -3.0861 -1.3448 7 8 3.6281 -3.9927 -0.7625 8 6 2.6379 -3.2620 -2.7446 9 6 2.4316 -2.2591 -3.6709 10 7 2.0570 -2.8435 -4.8198 11 6 1.7407 -2.1484 -6.0700 12 7 2.0196 -4.2283 -4.6226 13 6 2.3601 -4.4890 -3.3898 14 17 2.4619 -6.0659 -2.6708 15 6 3.2816 -1.5370 0.6472 16 6 2.0692 -0.7721 1.2263 17 1 1.3209 -1.4693 1.6031 18 6 2.5071 0.1965 2.3267 19 7 2.9001 -0.5620 3.5169 20 6 3.3308 0.0970 4.6374 21 1 3.3812 1.1758 4.6435 22 6 3.7027 -0.6216 5.7653 23 7 3.6409 -1.9363 5.7579 24 14 4.2909 0.2772 7.2935 25 1 4.2676 1.7413 7.0464 26 1 3.3957 -0.0462 8.4333 27 1 5.6765 -0.1489 7.6159 28 1 -0.3634 -1.0275 0.0121 29 1 -0.3633 0.5244 0.8838 30 1 -0.3633 0.5033 -0.8960 31 1 2.7167 -0.1222 -1.8111 32 1 1.2333 -1.1173 -1.8349 33 1 2.5535 -1.1991 -3.5032 34 1 2.6468 -2.0435 -6.6667 35 1 1.0023 -2.7235 -6.6287 36 1 1.3376 -1.1610 -5.8448 37 1 3.4980 -2.4223 1.2450 38 1 4.1541 -0.8859 0.5925 39 1 3.3540 0.7863 1.9757 40 1 1.6800 0.8611 2.5761 41 1 2.8546 -1.5308 3.5115 42 1 3.9011 -2.4385 6.5460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106863652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:51 Heat of formation + Delta-G solvation = 57.219626 kcal Electronic energy + Delta-G solvation = -25394.109793 eV Core-core repulsion = 21630.502109 eV Total energy + Delta-G solvation = -3763.607684 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.80324 -39.76104 -37.68800 -36.87110 -34.64478 -33.61720 -32.86134 -31.48304 -30.93803 -28.94674 -27.52248 -26.46517 -25.44356 -23.49113 -22.36075 -21.55812 -21.04437 -19.90205 -19.73167 -17.56208 -16.97843 -16.59691 -16.18410 -15.80315 -15.55519 -15.13325 -14.61799 -14.31721 -14.18236 -13.75442 -13.67839 -13.44320 -13.28459 -13.17807 -12.92866 -12.84825 -12.34042 -12.04022 -11.90827 -11.84290 -11.81684 -11.27422 -11.10845 -10.96276 -10.84920 -10.55983 -10.46027 -10.33554 -9.97806 -9.79037 -9.72340 -9.64027 -9.06405 -8.85743 -8.52546 -6.89455 -5.72486 -3.02033 1.10978 1.16841 1.70953 2.35529 3.03269 3.30291 3.45953 3.50874 3.53751 4.00374 4.20038 4.49071 4.56773 4.58650 4.63978 4.82184 4.84383 4.90531 4.94929 5.00746 5.27010 5.34036 5.50642 5.53398 5.58527 5.60924 5.77583 5.80468 5.97585 6.09014 6.15175 6.19591 6.23158 6.28134 6.43555 6.52961 6.73220 6.86337 6.93841 7.66282 7.72930 8.31855 8.45540 9.56821 10.14350 10.48489 11.50073 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.018461 B = 0.002847 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.349552 B = 9832.717209 C =10924.943080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.088 0.912 4 C 0.101 3.899 5 N -0.619 5.619 6 C 0.606 3.394 7 O -0.522 6.522 8 C -0.264 4.264 9 C 0.105 3.895 10 N -0.352 5.352 11 C 0.096 3.904 12 N -0.285 5.285 13 C 0.170 3.830 14 Cl 0.033 6.967 15 C 0.117 3.883 16 C -0.102 4.102 17 H 0.084 0.916 18 C 0.166 3.834 19 N -0.733 5.733 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.193 0.807 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.021 0.979 40 H 0.022 0.978 41 H 0.385 0.615 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.701 2.974 -26.853 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.022 4.022 5 N -0.353 5.353 6 C 0.394 3.606 7 O -0.398 6.398 8 C -0.280 4.280 9 C -0.045 4.045 10 N -0.132 5.132 11 C -0.044 4.044 12 N -0.110 5.110 13 C -0.023 4.023 14 Cl 0.061 6.939 15 C -0.004 4.004 16 C -0.122 4.122 17 H 0.102 0.898 18 C 0.038 3.962 19 N -0.377 5.377 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.210 0.790 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.219 0.781 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.704 1.946 -27.671 28.538 hybrid contribution 0.531 0.469 1.575 1.727 sum -6.173 2.415 -26.096 26.925 Atomic orbital electron populations 1.21831 0.94191 1.02025 1.01823 1.22085 0.96314 0.99679 0.93861 0.89391 1.22343 0.95106 0.87610 0.97167 1.48637 1.53812 1.14450 1.18374 1.16657 0.79006 0.80981 0.83952 1.90850 1.42440 1.39534 1.66931 1.20156 1.19663 0.91245 0.96933 1.23343 0.96164 0.99712 0.85317 1.48185 1.50710 1.03895 1.10410 1.22097 1.03174 0.96784 0.82340 1.77226 1.25817 0.91829 1.16121 1.22675 0.99171 0.89268 0.91137 1.98441 1.96247 1.19154 1.80074 1.22503 0.96673 1.00203 0.81046 1.22518 0.97220 0.97852 0.94605 0.89771 1.20615 0.96506 0.92711 0.86397 1.42387 1.79237 1.05995 1.10125 1.19235 1.35985 0.91231 0.90749 0.91169 1.24755 1.02400 0.95486 0.98309 1.69677 1.54271 1.04515 1.29369 0.86136 0.78106 0.78576 0.83458 1.20604 1.21915 1.21874 0.92591 0.91789 0.92908 0.91823 0.90975 0.78994 0.89835 0.88513 0.88534 0.89063 0.90682 0.96138 0.95977 0.78143 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.90 37.16 0.33 -1.04 16 2 C -0.10 -1.08 3.17 -89.25 -0.28 -1.36 16 3 H 0.09 0.87 7.85 -51.93 -0.41 0.46 16 4 C 0.10 0.97 4.93 -2.98 -0.01 0.96 16 5 N -0.62 -8.57 3.29 -171.26 -0.56 -9.14 16 6 C 0.61 9.55 7.81 -12.54 -0.10 9.45 16 7 O -0.52 -10.31 16.30 5.27 0.09 -10.23 16 8 C -0.26 -3.42 5.82 -105.04 -0.61 -4.03 16 9 C 0.11 0.90 9.72 -16.56 -0.16 0.74 16 10 N -0.35 -2.94 3.98 -67.59 -0.27 -3.21 16 11 C 0.10 0.29 11.44 59.85 0.68 0.98 16 12 N -0.28 -3.44 12.50 33.18 0.41 -3.03 16 13 C 0.17 2.32 7.87 -16.91 -0.13 2.19 16 14 Cl 0.03 0.46 28.34 -51.86 -1.47 -1.01 16 15 C 0.12 1.89 6.47 -2.31 -0.01 1.88 16 16 C -0.10 -1.57 2.60 -88.93 -0.23 -1.80 16 17 H 0.08 1.43 7.86 -51.93 -0.41 1.02 16 18 C 0.17 3.14 5.58 -4.04 -0.02 3.12 16 19 N -0.73 -18.32 5.52 -59.91 -0.33 -18.65 16 20 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 24 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.45 7.44 -51.93 -0.39 0.06 16 32 H 0.07 0.59 6.43 -51.93 -0.33 0.25 16 33 H 0.19 0.93 6.03 -52.48 -0.32 0.62 16 34 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.09 1.77 7.81 -51.93 -0.41 1.36 16 38 H 0.07 1.19 7.94 -51.93 -0.41 0.78 16 39 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.38 10.29 7.67 -40.82 -0.31 9.97 16 42 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -36.03 363.82 -7.65 -43.69 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.90 Total: 2.65 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -0.80 Total: 3.74 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.02 Total: -61.82 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -1.47 Total: -1.01 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.03 -7.65 -43.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106863652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.906 kcal (2) G-P(sol) polarization free energy of solvation -36.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds