Wall clock time and date at job start Fri Apr 10 2020 18:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 C 1.53000 * 109.47596 * 119.99744 * 2 1 3 5 5 H 1.09002 * 109.46839 * 300.00237 * 4 2 1 6 6 C 1.52998 * 109.47509 * 180.02562 * 4 2 1 7 7 N 1.46505 * 109.47233 * 175.00020 * 6 4 2 8 8 C 1.34768 * 120.00082 * 179.97438 * 7 6 4 9 9 O 1.21345 * 120.00101 * 0.02562 * 8 7 6 10 10 C 1.49453 * 120.00060 * 179.97438 * 8 7 6 11 11 O 1.21347 * 119.99738 * 5.09600 * 10 8 7 12 12 N 1.34782 * 120.00141 * 185.08842 * 10 8 7 13 13 C 1.46497 * 119.99894 * 185.03768 * 12 10 8 14 14 C 1.53005 * 109.46780 * 184.77988 * 13 12 10 15 15 C 1.50694 * 115.55017 * 294.81935 * 14 13 12 16 16 H 1.08003 * 119.99667 * 95.20821 * 15 14 13 17 17 C 1.37878 * 120.00569 * 274.92361 * 15 14 13 18 18 N 1.31513 * 119.99163 * 355.42361 * 17 15 14 19 19 Si 1.86794 * 120.00501 * 175.42139 * 17 15 14 20 20 H 1.48506 * 109.47138 * 59.99993 * 19 17 15 21 21 H 1.48497 * 109.47408 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47174 * 300.00591 * 19 17 15 23 23 C 1.53002 * 117.49623 * 80.49302 * 14 13 12 24 24 C 1.53002 * 117.49534 * 149.14978 * 14 13 12 25 25 C 1.50701 * 109.46908 * 60.00021 * 4 2 1 26 26 O 1.20824 * 119.99820 * 120.00670 * 25 4 2 27 27 O 1.34226 * 119.99970 * 300.00476 * 25 4 2 28 28 H 1.08998 * 109.47542 * 60.00491 * 1 2 3 29 29 H 1.09007 * 109.46658 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47542 * 299.99897 * 1 2 3 31 31 H 1.08997 * 109.47542 * 240.00103 * 2 1 3 32 32 H 1.08999 * 109.47516 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.46985 * 299.99889 * 3 2 1 34 34 H 1.09002 * 109.47259 * 59.99770 * 3 2 1 35 35 H 1.08996 * 109.47354 * 55.00277 * 6 4 2 36 36 H 1.08999 * 109.47235 * 294.99656 * 6 4 2 37 37 H 0.97003 * 120.00007 * 0.02562 * 7 6 4 38 38 H 0.97004 * 119.99403 * 5.04265 * 12 10 8 39 39 H 1.09003 * 109.46616 * 64.78885 * 13 12 10 40 40 H 1.08993 * 109.47729 * 304.78355 * 13 12 10 41 41 H 0.97009 * 119.99393 * 184.99658 * 18 17 15 42 42 H 1.08995 * 117.49715 * 214.99983 * 23 14 13 43 43 H 1.09003 * 117.49834 * 0.02562 * 23 14 13 44 44 H 1.09005 * 117.49794 * 359.97438 * 24 14 13 45 45 H 1.08999 * 117.49412 * 144.97246 * 24 14 13 46 46 H 0.96707 * 116.99997 * 180.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2073 2.1392 6 6 3.5700 -0.7206 1.2495 7 7 4.0584 -1.3043 2.5014 8 6 5.3834 -1.4084 2.7246 9 8 6.1719 -1.0182 1.8889 10 6 5.8815 -2.0033 4.0019 11 8 5.0968 -2.4766 4.7974 12 7 7.2023 -2.0142 4.2703 13 6 7.7008 -2.6943 5.4682 14 6 9.2066 -2.4573 5.5998 15 6 10.0569 -3.0595 4.5111 16 1 10.3512 -2.4602 3.6621 17 6 10.4640 -4.3737 4.6015 18 7 10.1870 -5.0751 5.6789 19 14 11.4089 -5.1578 3.1938 20 1 12.6694 -4.4067 2.9647 21 1 11.7272 -6.5674 3.5357 22 1 10.5809 -5.1227 1.9616 23 6 9.6624 -1.1242 6.1965 24 6 9.7940 -2.4130 7.0119 25 6 1.5378 -2.1420 1.2493 26 8 2.3230 -3.0603 1.2494 27 8 0.2181 -2.3873 1.2493 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8900 35 1 3.9330 0.3032 1.1602 36 1 3.9338 -1.3099 0.4078 37 1 3.4280 -1.6165 3.1693 38 1 7.8228 -1.5716 3.6702 39 1 7.5072 -3.7638 5.3858 40 1 7.1926 -2.2998 6.3481 41 1 10.5350 -5.9756 5.7741 42 1 10.5774 -0.6827 5.8015 43 1 8.8895 -0.4162 6.4957 44 1 9.1075 -2.5522 7.8471 45 1 10.7953 -2.8197 7.1534 46 1 -0.0561 -3.3147 1.2497 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594531256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:54 Heat of formation + Delta-G solvation = -150.099491 kcal Electronic energy + Delta-G solvation = -27984.445199 eV Core-core repulsion = 23874.678663 eV Total energy + Delta-G solvation = -4109.766537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.07995 -40.06678 -38.25136 -37.17696 -36.69181 -36.52748 -34.56891 -33.23744 -31.94912 -30.08464 -27.91167 -27.10842 -25.63878 -25.02109 -22.99711 -21.89473 -21.13726 -20.72750 -19.74195 -19.41459 -18.53711 -17.98829 -17.39746 -16.72768 -16.14466 -15.98682 -15.54995 -15.34702 -14.81217 -14.65238 -14.42548 -14.32531 -14.02204 -13.84460 -13.47160 -13.34516 -13.05836 -12.83545 -12.66662 -12.58075 -12.21604 -11.96018 -11.83124 -11.60859 -11.42150 -11.26005 -11.18927 -11.16347 -10.96219 -10.92357 -10.74289 -10.52220 -10.23463 -9.60496 -9.20997 -9.20381 -9.06434 -8.50378 -8.36557 -8.16023 -6.06543 -4.16209 1.82942 1.86160 2.60496 2.67222 3.30950 3.35904 3.39515 3.64444 3.97111 4.00699 4.28905 4.38436 4.42094 4.75095 4.81501 4.89125 4.95076 5.09422 5.21137 5.23820 5.32794 5.36452 5.44375 5.48555 5.56844 5.67923 5.84697 5.98013 5.98610 6.16652 6.21522 6.30457 6.41972 6.49650 6.68651 6.77280 7.01785 7.10046 7.22115 7.35147 7.51535 7.55810 7.83172 7.87205 8.18029 8.33702 8.55901 8.85741 9.51462 11.00536 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.002590 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.843290 B =10808.777589 C =11100.556665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.084 4.084 3 C -0.153 4.153 4 C -0.090 4.090 5 H 0.119 0.881 6 C 0.129 3.871 7 N -0.702 5.702 8 C 0.512 3.488 9 O -0.519 6.519 10 C 0.496 3.504 11 O -0.541 6.541 12 N -0.666 5.666 13 C 0.159 3.841 14 C 0.022 3.978 15 C -0.502 4.502 16 H 0.061 0.939 17 C 0.073 3.927 18 N -0.876 5.876 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.210 4.210 24 C -0.139 4.139 25 C 0.475 3.525 26 O -0.495 6.495 27 O -0.510 6.510 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.409 0.591 38 H 0.414 0.586 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.262 0.738 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.514 11.007 -9.349 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.103 4.103 3 C -0.210 4.210 4 C -0.110 4.110 5 H 0.136 0.864 6 C 0.006 3.994 7 N -0.356 5.356 8 C 0.293 3.707 9 O -0.394 6.394 10 C 0.276 3.724 11 O -0.420 6.420 12 N -0.316 5.316 13 C 0.037 3.963 14 C 0.021 3.979 15 C -0.539 4.539 16 H 0.080 0.920 17 C -0.131 4.131 18 N -0.512 5.512 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.247 4.247 24 C -0.178 4.178 25 C 0.316 3.684 26 O -0.381 6.381 27 O -0.323 6.323 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.245 0.755 38 H 0.250 0.750 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -20.137 10.861 -9.327 24.707 hybrid contribution 0.343 -1.231 -0.624 1.422 sum -19.794 9.630 -9.950 24.157 Atomic orbital electron populations 1.22104 0.93501 1.03913 1.02041 1.21029 0.97189 0.96660 0.95386 1.21966 1.01798 0.94578 1.02691 1.21522 0.95925 0.90305 1.03201 0.86365 1.21424 0.89996 1.00214 0.87792 1.45585 1.07095 1.62552 1.20354 1.20419 0.82790 0.79310 0.88171 1.90750 1.55143 1.47101 1.46381 1.19902 0.84251 0.81704 0.86589 1.90706 1.55494 1.47407 1.48384 1.45878 1.05855 1.52728 1.27126 1.21212 0.94659 0.96726 0.83733 1.19022 0.89915 0.94502 0.94482 1.20350 1.32483 0.95669 1.05403 0.92038 1.24986 0.95440 0.96948 0.95692 1.69982 1.43698 1.10996 1.26521 0.86671 0.80255 0.78304 0.82897 1.20210 1.21283 1.19997 1.23032 1.02059 0.91492 1.08120 1.22475 1.01982 0.98929 0.94374 1.23354 0.80230 0.92473 0.72352 1.90841 1.56632 1.46594 1.44053 1.84616 1.26074 1.36161 1.85450 0.92374 0.90219 0.92279 0.90167 0.91664 0.91764 0.91997 0.88986 0.90009 0.75484 0.75014 0.90827 0.93415 0.92804 0.90218 0.91651 0.91747 0.89388 0.73352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 8.67 37.15 0.32 -0.48 16 2 C -0.08 -0.47 2.50 -90.62 -0.23 -0.70 16 3 C -0.15 -0.76 8.85 37.16 0.33 -0.43 16 4 C -0.09 -0.66 1.95 -91.77 -0.18 -0.84 16 5 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 6 C 0.13 1.32 4.41 -4.04 -0.02 1.31 16 7 N -0.70 -9.43 4.80 -60.73 -0.29 -9.72 16 8 C 0.51 8.81 7.89 -11.59 -0.09 8.72 16 9 O -0.52 -9.82 16.50 5.50 0.09 -9.73 16 10 C 0.50 9.73 7.88 -11.58 -0.09 9.64 16 11 O -0.54 -11.45 16.47 5.50 0.09 -11.36 16 12 N -0.67 -13.77 5.46 -60.73 -0.33 -14.10 16 13 C 0.16 3.62 5.53 -4.04 -0.02 3.60 16 14 C 0.02 0.51 1.47 -155.66 -0.23 0.28 16 15 C -0.50 -13.22 8.59 -34.44 -0.30 -13.51 16 16 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 17 C 0.07 1.98 5.43 -17.82 -0.10 1.89 16 18 N -0.88 -24.45 12.65 55.43 0.70 -23.75 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 24 C -0.14 -3.19 9.14 -26.69 -0.24 -3.44 16 25 C 0.47 4.30 7.23 36.01 0.26 4.56 16 26 O -0.50 -6.64 16.05 -18.75 -0.30 -6.94 16 27 O -0.51 -3.11 10.34 -39.25 -0.41 -3.51 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.44 5.33 -51.92 -0.28 0.17 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.36 6.32 -51.93 -0.33 0.03 16 33 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.83 6.17 -51.93 -0.32 0.51 16 36 H 0.08 0.97 7.96 -51.93 -0.41 0.55 16 37 H 0.41 5.24 7.64 -40.82 -0.31 4.93 16 38 H 0.41 8.43 7.84 -40.82 -0.32 8.11 16 39 H 0.07 1.88 8.14 -51.93 -0.42 1.46 16 40 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 41 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 42 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 45 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 46 H 0.41 1.17 9.10 45.56 0.41 1.59 16 LS Contribution 386.74 15.07 5.83 5.83 Total: -1.00 -32.83 386.74 -6.66 -39.49 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -6.17 Total: 11.74 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.85 Total: 5.91 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.08 Total: -47.57 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.53 Total: -31.54 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.83 -6.66 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594531256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.611 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds