Wall clock time and date at job start Fri Apr 10 2020 18:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47129 * 2 1 4 4 C 1.50699 * 109.47141 * 120.00470 * 2 1 3 5 5 H 1.07998 * 119.99961 * 117.90954 * 4 2 1 6 6 C 1.37872 * 119.99847 * 297.90577 * 4 2 1 7 7 N 1.31510 * 120.00156 * 7.60223 * 6 4 2 8 8 Si 1.86800 * 120.00173 * 187.60304 * 6 4 2 9 9 H 1.48501 * 109.47094 * 265.12320 * 8 6 4 10 10 H 1.48507 * 109.47069 * 25.11589 * 8 6 4 11 11 H 1.48495 * 109.47573 * 145.12044 * 8 6 4 12 12 C 1.52998 * 109.46851 * 240.00582 * 2 1 3 13 13 N 1.46500 * 109.47748 * 59.99590 * 12 2 1 14 14 C 1.34777 * 120.00166 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00176 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99711 * 180.02562 * 14 13 12 17 17 C 1.48100 * 127.85020 * 359.68499 * 16 14 13 18 18 C 1.54645 * 104.57874 * 140.08979 * 17 16 14 19 19 H 1.09004 * 113.36603 * 260.86422 * 18 17 16 20 20 C 1.55992 * 108.74374 * 133.94556 * 18 17 16 21 21 O 1.44379 * 105.16203 * 272.98153 * 20 18 17 22 22 C 1.44390 * 105.25451 * 319.42713 * 21 20 18 23 23 C 1.54393 * 104.91478 * 40.76875 * 22 21 20 24 24 C 1.50705 * 112.70706 * 212.73599 * 23 22 21 25 25 O 1.20828 * 119.99940 * 117.43231 * 24 23 22 26 26 O 1.34237 * 120.00202 * 297.44255 * 24 23 22 27 27 C 1.48095 * 127.85037 * 180.02562 * 16 14 13 28 28 H 1.08997 * 109.47169 * 305.79178 * 1 2 3 29 29 H 1.09002 * 109.47084 * 65.78533 * 1 2 3 30 30 H 1.08994 * 109.47141 * 185.78794 * 1 2 3 31 31 H 1.08999 * 109.47026 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47568 * 300.00485 * 3 2 1 33 33 H 1.09001 * 109.46744 * 60.00355 * 3 2 1 34 34 H 0.97002 * 119.99976 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47372 * 180.02562 * 12 2 1 36 36 H 1.09012 * 109.47291 * 299.99525 * 12 2 1 37 37 H 0.96997 * 119.99492 * 0.02562 * 13 12 2 38 38 H 1.09002 * 110.37745 * 258.95396 * 17 16 14 39 39 H 1.08995 * 110.38037 * 21.30775 * 17 16 14 40 40 H 1.08999 * 110.07277 * 154.12317 * 20 18 17 41 41 H 1.09000 * 110.49150 * 32.04802 * 20 18 17 42 42 H 1.08994 * 110.35629 * 281.90777 * 22 21 20 43 43 H 1.08998 * 110.43647 * 159.66673 * 22 21 20 44 44 H 0.96693 * 117.00265 * 179.97438 * 26 24 23 45 45 H 1.09002 * 110.37620 * 338.69877 * 27 16 14 46 46 H 1.09002 * 110.37781 * 101.04604 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6251 -1.6079 1.1316 6 6 1.7353 -0.2149 2.4822 7 7 0.8931 0.7871 2.6099 8 14 2.5290 -0.9665 3.9969 9 1 1.6224 -1.9916 4.5737 10 1 3.8165 -1.6019 3.6174 11 1 2.7790 0.0960 5.0037 12 6 2.0400 -0.7211 -1.2493 13 7 1.5516 -0.0306 -2.4455 14 6 1.8776 -0.4907 -3.6696 15 8 2.5766 -1.4792 -3.7812 16 7 1.4287 0.1450 -4.7700 17 6 0.5693 1.3493 -4.8367 18 6 1.1584 2.1840 -5.9976 19 1 1.8104 2.9908 -5.6626 20 6 -0.0111 2.6744 -6.9061 21 8 -0.2266 1.6065 -7.8535 22 6 1.0938 1.1490 -8.2171 23 6 1.8918 1.1478 -6.8954 24 6 3.3494 1.4743 -7.0957 25 8 3.8220 2.4638 -6.5882 26 8 4.1225 0.6661 -7.8379 27 6 1.6770 -0.2061 -6.1871 28 1 -0.3633 0.6010 0.8336 29 1 -0.3633 0.4215 -0.9373 30 1 -0.3633 -1.0224 0.1036 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 0.6844 1.1360 3.4906 35 1 3.1300 -0.7216 -1.2492 36 1 1.6766 -1.7489 -1.2494 37 1 0.9942 0.7583 -2.3564 38 1 -0.4615 1.0685 -5.0530 39 1 0.6235 1.9066 -3.9015 40 1 0.2764 3.5890 -7.4247 41 1 -0.9102 2.8423 -6.3132 42 1 1.5482 1.8331 -8.9336 43 1 1.0468 0.1423 -8.6324 44 1 5.0509 0.9170 -7.9381 45 1 2.5695 -0.8259 -6.2738 46 1 0.8135 -0.7218 -6.6073 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595262517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:59 Heat of formation + Delta-G solvation = -150.222029 kcal Electronic energy + Delta-G solvation = -29307.333998 eV Core-core repulsion = 25197.562148 eV Total energy + Delta-G solvation = -4109.771850 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71154 -39.84809 -39.13353 -36.70603 -36.47805 -35.90932 -33.35315 -32.06599 -31.21618 -30.66266 -26.68399 -26.17033 -25.73294 -25.36141 -24.49015 -24.04392 -22.36669 -20.08748 -19.92454 -18.85538 -18.28965 -18.13558 -17.49815 -16.36715 -16.03429 -15.94525 -15.83410 -15.65700 -15.14348 -14.86666 -14.69904 -14.08483 -13.91857 -13.73299 -13.38260 -12.99122 -12.68434 -12.56464 -12.50445 -12.32725 -12.18616 -11.92005 -11.74326 -11.46330 -11.42645 -11.34926 -11.18931 -10.87969 -10.83437 -10.67503 -10.38833 -10.34768 -10.19858 -9.80876 -9.62985 -9.32271 -8.87133 -8.81169 -8.39374 -8.20668 -6.02829 -4.10825 1.77975 2.49137 2.71522 3.28415 3.36072 3.41153 3.48191 3.51002 3.56158 4.00237 4.28870 4.35465 4.43574 4.52730 4.57847 4.81234 4.91436 5.04170 5.16137 5.20124 5.24471 5.26909 5.38244 5.40907 5.55352 5.66675 5.99163 6.12283 6.21266 6.24512 6.35239 6.49982 6.78063 6.81685 6.90555 7.02123 7.06422 7.28564 7.38175 7.50613 7.55244 7.70420 7.98972 8.11433 8.33308 8.39936 8.87658 8.95903 9.54292 10.99275 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.022432 B = 0.002904 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.931988 B = 9641.071470 C =10022.642232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.286 1.286 12 C 0.150 3.850 13 N -0.728 5.728 14 C 0.723 3.277 15 O -0.593 6.593 16 N -0.647 5.647 17 C 0.109 3.891 18 C -0.120 4.120 19 H 0.123 0.877 20 C 0.050 3.950 21 O -0.360 6.360 22 C 0.070 3.930 23 C -0.108 4.108 24 C 0.505 3.495 25 O -0.502 6.502 26 O -0.510 6.510 27 C 0.145 3.855 28 H 0.085 0.915 29 H 0.002 0.998 30 H 0.029 0.971 31 H 0.027 0.973 32 H 0.006 0.994 33 H 0.080 0.920 34 H 0.259 0.741 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.394 0.606 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.415 0.585 45 H 0.094 0.906 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 5.214 -22.243 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.212 1.212 12 C 0.027 3.973 13 N -0.382 5.382 14 C 0.425 3.575 15 O -0.471 6.471 16 N -0.386 5.386 17 C -0.014 4.014 18 C -0.140 4.140 19 H 0.141 0.859 20 C -0.027 4.027 21 O -0.278 6.278 22 C -0.008 4.008 23 C -0.110 4.110 24 C 0.346 3.654 25 O -0.389 6.389 26 O -0.322 6.322 27 C 0.020 3.980 28 H 0.104 0.896 29 H 0.021 0.979 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.025 0.975 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.229 0.771 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.130 0.870 44 H 0.274 0.726 45 H 0.112 0.888 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.572 4.584 -21.885 22.415 hybrid contribution 1.069 0.350 0.930 1.459 sum -0.503 4.934 -20.955 21.534 Atomic orbital electron populations 1.21845 0.97589 1.00207 0.98851 1.18372 0.92928 0.92654 0.90533 1.21782 0.98652 0.98362 0.99776 1.20962 1.33092 1.10708 0.89825 0.92369 1.24865 0.94648 0.95076 0.98777 1.69843 1.33155 1.26086 1.23183 0.86584 0.79954 0.78814 0.82693 1.20818 1.19822 1.21208 1.21625 0.97945 0.95505 0.82230 1.45526 1.55512 1.32947 1.04261 1.15479 0.80011 0.82298 0.79697 1.90898 1.43269 1.27541 1.85428 1.48038 1.54822 1.31011 1.04752 1.22475 0.94633 0.85884 0.98447 1.23989 0.96818 0.97789 0.95388 0.85880 1.23810 0.98219 0.90504 0.90140 1.89192 1.24983 1.51925 1.61685 1.23311 0.82730 1.02076 0.92647 1.22713 0.89049 0.99967 0.99303 1.22451 0.88543 0.79995 0.74441 1.90737 1.74610 1.27516 1.46047 1.84490 1.27318 1.53988 1.66374 1.22058 1.03435 0.92519 0.79974 0.89634 0.97861 0.95224 0.95347 0.97514 0.90082 0.93052 0.92881 0.92787 0.77086 0.89930 0.89730 0.91373 0.87578 0.91380 0.87033 0.72603 0.88787 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.90 8.06 37.16 0.30 -2.60 16 4 C -0.51 -13.37 8.00 -34.44 -0.28 -13.64 16 5 H 0.06 1.55 7.76 -52.49 -0.41 1.15 16 6 C 0.07 1.79 5.11 -17.82 -0.09 1.70 16 7 N -0.88 -23.56 9.48 55.43 0.53 -23.03 16 8 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 C 0.15 3.27 4.50 -4.04 -0.02 3.25 16 13 N -0.73 -13.57 4.88 -65.22 -0.32 -13.89 16 14 C 0.72 13.49 8.57 -86.92 -0.74 12.74 16 15 O -0.59 -13.25 16.61 5.29 0.09 -13.16 16 16 N -0.65 -9.11 3.31 -175.00 -0.58 -9.69 16 17 C 0.11 1.14 6.40 -2.30 -0.01 1.13 16 18 C -0.12 -1.10 3.87 -86.83 -0.34 -1.43 16 19 H 0.12 1.24 6.97 -51.93 -0.36 0.88 16 20 C 0.05 0.35 6.90 38.76 0.27 0.62 16 21 O -0.36 -3.05 11.65 -35.23 -0.41 -3.46 16 22 C 0.07 0.50 6.44 37.89 0.24 0.75 16 23 C -0.11 -1.01 1.02 -152.92 -0.16 -1.17 16 24 C 0.50 5.34 7.08 36.01 0.25 5.60 16 25 O -0.50 -6.80 16.39 -18.75 -0.31 -7.11 16 26 O -0.51 -4.05 13.32 -39.28 -0.52 -4.58 16 27 C 0.14 1.65 6.12 -2.49 -0.02 1.63 16 28 H 0.08 2.12 6.16 -51.93 -0.32 1.80 16 29 H 0.00 0.05 6.72 -51.93 -0.35 -0.30 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 33 H 0.08 2.01 6.21 -51.93 -0.32 1.69 16 34 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.24 8.14 -51.92 -0.42 0.81 16 37 H 0.39 6.63 4.55 -40.82 -0.19 6.44 16 38 H 0.08 0.75 7.59 -51.93 -0.39 0.36 16 39 H 0.08 0.87 6.84 -51.93 -0.36 0.52 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.11 0.60 7.79 -51.93 -0.40 0.19 16 42 H 0.07 0.42 7.99 -51.93 -0.41 0.01 16 43 H 0.11 0.64 7.76 -51.93 -0.40 0.24 16 44 H 0.41 1.67 9.10 45.56 0.41 2.08 16 45 H 0.09 1.20 7.55 -51.93 -0.39 0.81 16 46 H 0.09 0.88 7.59 -51.93 -0.39 0.48 16 LS Contribution 363.60 15.07 5.48 5.48 Total: -1.00 -33.02 363.60 -7.32 -40.34 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.89 Total: 6.11 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -0.36 Total: 7.23 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.37 Total: -46.61 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -1.15 Total: -28.31 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.02 -7.32 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595262517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.882 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds