Wall clock time and date at job start Fri Apr 10 2020 18:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 117.00225 * 2 1 4 4 O 1.20822 * 119.99927 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00182 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47217 * 179.97438 * 5 3 2 7 7 C 1.37089 * 120.00092 * 270.00346 * 6 5 3 8 8 H 1.08006 * 120.00024 * 140.12261 * 7 6 5 9 9 C 1.38948 * 120.00295 * 320.12210 * 7 6 5 10 10 N 1.31413 * 120.00188 * 160.98532 * 9 7 6 11 11 Si 1.86800 * 120.00093 * 340.98196 * 9 7 6 12 12 H 1.48494 * 109.47054 * 95.82263 * 11 9 7 13 13 H 1.48500 * 109.47456 * 215.82827 * 11 9 7 14 14 H 1.48504 * 109.46925 * 335.82744 * 11 9 7 15 15 C 1.34782 * 119.99475 * 90.00199 * 6 5 3 16 16 O 1.21287 * 120.00089 * 4.14095 * 15 6 5 17 17 C 1.50696 * 119.99438 * 184.13689 * 15 6 5 18 18 H 1.08998 * 110.89008 * 31.99695 * 17 15 6 19 19 C 1.54632 * 110.97229 * 268.18047 * 17 15 6 20 20 C 1.51289 * 104.31350 * 217.15265 * 19 17 15 21 21 O 1.21276 * 124.94088 * 196.22083 * 20 19 17 22 22 N 1.34417 * 110.11517 * 16.18846 * 20 19 17 23 23 C 1.46500 * 124.35042 * 180.38530 * 22 20 19 24 24 C 1.53008 * 109.47040 * 90.02096 * 23 22 20 25 25 C 1.52997 * 109.46823 * 65.00183 * 24 23 22 26 26 C 1.52999 * 109.47079 * 185.00031 * 24 23 22 27 27 C 1.46772 * 111.30140 * 0.40429 * 22 20 19 28 28 H 1.09005 * 109.46481 * 300.00018 * 1 2 3 29 29 H 1.08992 * 109.47079 * 59.99391 * 1 2 3 30 30 H 1.08995 * 109.47122 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46401 * 60.00144 * 5 3 2 32 32 H 1.09001 * 109.47255 * 300.00597 * 5 3 2 33 33 H 0.96997 * 119.99984 * 179.97438 * 10 9 7 34 34 H 1.08993 * 110.48644 * 98.40570 * 19 17 15 35 35 H 1.09002 * 110.48387 * 335.89391 * 19 17 15 36 36 H 1.09003 * 109.46979 * 210.02392 * 23 22 20 37 37 H 1.08994 * 109.46921 * 330.02300 * 23 22 20 38 38 H 1.08997 * 109.46940 * 305.00622 * 24 23 22 39 39 H 1.09001 * 109.47311 * 59.99789 * 25 24 23 40 40 H 1.09007 * 109.46988 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.47436 * 299.99878 * 25 24 23 42 42 H 1.09001 * 109.46913 * 59.99769 * 26 24 23 43 43 H 1.08993 * 109.47134 * 180.02562 * 26 24 23 44 44 H 1.09001 * 109.47001 * 300.00178 * 26 24 23 45 45 H 1.08996 * 110.24251 * 101.98843 * 27 22 20 46 46 H 1.09000 * 110.24115 * 223.89541 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1766 3.3363 -1.1877 8 1 3.8544 4.3613 -1.2972 9 6 4.7886 2.6831 -2.2505 10 7 4.6497 3.1445 -3.4731 11 14 5.8088 1.1491 -1.9415 12 1 4.9713 -0.0561 -2.1673 13 1 6.9665 1.1289 -2.8713 14 1 6.2997 1.1552 -0.5399 15 6 4.1724 3.3266 1.1668 16 8 4.0734 2.7264 2.2161 17 6 4.5086 4.7955 1.1677 18 1 4.0398 5.3020 0.3240 19 6 6.0396 5.0129 1.1625 20 6 6.2488 6.2211 2.0488 21 8 7.2621 6.8861 2.0888 22 7 5.1478 6.4505 2.7851 23 6 5.0088 7.5493 3.7439 24 6 4.4372 8.7776 3.0327 25 6 3.0156 8.4748 2.5551 26 6 4.4084 9.9609 4.0021 27 6 4.1030 5.4584 2.5053 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9558 0.7808 0.8908 33 1 5.0772 2.6887 -4.2150 34 1 6.3926 5.2158 0.1515 35 1 6.5497 4.1432 1.5765 36 1 4.3355 7.2482 4.5466 37 1 5.9857 7.7931 4.1613 38 1 5.0634 9.0252 2.1755 39 1 2.3894 8.2270 3.4123 40 1 2.6082 9.3499 2.0488 41 1 3.0361 7.6317 1.8645 42 1 5.4212 10.1765 4.3424 43 1 4.0008 10.8357 3.4956 44 1 3.7822 9.7132 4.8592 45 1 4.0693 4.7121 3.2989 46 1 3.1342 5.9483 2.4076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609992444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:05 Heat of formation + Delta-G solvation = -142.257575 kcal Electronic energy + Delta-G solvation = -29359.098408 eV Core-core repulsion = 25249.671923 eV Total energy + Delta-G solvation = -4109.426486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.56585 -39.96987 -38.65390 -36.58952 -36.10657 -35.30322 -34.90936 -32.16342 -31.70716 -29.08269 -27.66947 -27.07822 -26.73054 -26.01239 -25.00802 -22.45694 -20.84317 -20.59184 -19.19176 -19.01151 -17.56338 -17.32559 -17.08026 -16.53929 -16.06154 -15.79264 -15.47957 -15.29400 -15.09497 -14.64638 -14.12541 -14.02119 -13.75593 -13.39620 -13.28075 -13.09362 -12.96045 -12.78844 -12.59674 -12.41283 -12.34232 -12.26444 -11.92814 -11.81141 -11.66305 -11.31849 -11.20464 -11.07855 -10.85997 -10.77290 -10.71618 -10.54097 -10.42635 -10.16475 -9.99882 -9.61924 -9.39908 -8.89413 -8.43631 -8.11530 -6.63617 -4.31382 2.74839 2.81284 2.89432 2.90854 3.11648 3.13299 3.21414 3.51540 3.92380 4.04605 4.63036 4.73455 4.82564 4.86368 4.99026 5.03459 5.26806 5.32363 5.37816 5.38667 5.40291 5.42394 5.50930 5.57703 5.59446 5.66644 5.71766 5.72398 5.78855 5.80243 5.91646 5.96948 5.98934 6.03967 6.24859 6.25357 6.33229 6.43389 6.75588 6.76552 7.02066 7.33187 7.83098 8.02655 8.28828 8.44671 8.69617 9.04055 9.33251 10.46090 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.004126 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.299552 B = 6784.803417 C = 7896.395383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.450 3.550 4 O -0.489 6.489 5 C 0.107 3.893 6 N -0.443 5.443 7 C -0.348 4.348 8 H 0.110 0.890 9 C 0.070 3.930 10 N -0.850 5.850 11 Si 0.861 3.139 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.254 1.254 15 C 0.508 3.492 16 O -0.586 6.586 17 C -0.098 4.098 18 H 0.116 0.884 19 C -0.133 4.133 20 C 0.523 3.477 21 O -0.541 6.541 22 N -0.616 5.616 23 C 0.132 3.868 24 C -0.115 4.115 25 C -0.151 4.151 26 C -0.143 4.143 27 C 0.109 3.891 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.278 0.722 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.089 0.911 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 2.233 8.990 10.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.290 3.710 4 O -0.374 6.374 5 C -0.018 4.018 6 N -0.163 5.163 7 C -0.474 4.474 8 H 0.128 0.872 9 C -0.139 4.139 10 N -0.484 5.484 11 Si 0.687 3.313 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.178 1.178 15 C 0.298 3.702 16 O -0.470 6.470 17 C -0.120 4.120 18 H 0.134 0.866 19 C -0.173 4.173 20 C 0.311 3.689 21 O -0.419 6.419 22 N -0.350 5.350 23 C 0.010 3.990 24 C -0.135 4.135 25 C -0.208 4.208 26 C -0.201 4.201 27 C -0.014 4.014 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.107 0.893 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.681 2.638 9.352 10.391 hybrid contribution 0.048 -0.804 -0.377 0.890 sum -3.632 1.834 8.975 9.854 Atomic orbital electron populations 1.23146 0.77416 1.02906 1.02283 1.86522 1.22756 1.34436 1.84875 1.24674 0.92756 0.81253 0.72309 1.90612 1.66584 1.36222 1.43936 1.21363 0.86959 0.88409 1.05091 1.43316 1.58014 1.08411 1.06609 1.19067 1.40460 1.00217 0.87699 0.87246 1.25348 0.95811 0.98040 0.94713 1.69722 1.39495 1.40617 0.98524 0.87149 0.81212 0.82785 0.80148 1.19613 1.20537 1.17822 1.19893 0.78543 0.88648 0.83120 1.90564 1.56152 1.68561 1.31734 1.21938 0.96610 0.94713 0.98693 0.86580 1.22168 0.95730 0.97323 1.02096 1.20988 0.82300 0.85310 0.80255 1.90672 1.29747 1.53180 1.68279 1.48278 1.16156 1.29002 1.41551 1.21418 1.01777 0.85319 0.90515 1.21554 0.97642 0.95056 0.99250 1.21957 0.95553 1.02001 1.01317 1.21762 1.01768 0.97517 0.99065 1.22253 0.90890 0.90724 0.97562 0.92313 0.92131 0.88687 0.87760 0.86732 0.91126 0.86757 0.87863 0.90508 0.90215 0.90700 0.92767 0.92766 0.91800 0.92587 0.92480 0.92642 0.89333 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.48 10.57 -39.26 -0.41 -6.89 16 3 C 0.45 9.30 8.02 36.00 0.29 9.59 16 4 O -0.49 -11.25 16.18 -18.75 -0.30 -11.56 16 5 C 0.11 2.22 4.81 -5.20 -0.02 2.20 16 6 N -0.44 -9.87 1.63 -116.10 -0.19 -10.06 16 7 C -0.35 -8.34 9.08 -14.94 -0.14 -8.48 16 8 H 0.11 2.77 6.65 -52.48 -0.35 2.42 16 9 C 0.07 1.70 5.35 -17.47 -0.09 1.61 16 10 N -0.85 -22.07 13.96 55.50 0.77 -21.30 16 11 Si 0.86 18.36 24.90 -169.99 -4.23 14.13 16 12 H -0.27 -5.49 6.74 56.52 0.38 -5.11 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 14 H -0.25 -5.34 7.11 56.52 0.40 -4.94 16 15 C 0.51 10.68 6.73 -10.99 -0.07 10.61 16 16 O -0.59 -13.04 15.23 5.55 0.08 -12.95 16 17 C -0.10 -1.74 2.83 -90.03 -0.25 -2.00 16 18 H 0.12 2.10 6.49 -51.93 -0.34 1.76 16 19 C -0.13 -2.30 6.40 -26.74 -0.17 -2.47 16 20 C 0.52 9.14 8.02 -10.86 -0.09 9.05 16 21 O -0.54 -10.92 17.59 5.56 0.10 -10.82 16 22 N -0.62 -9.20 2.71 -172.27 -0.47 -9.66 16 23 C 0.13 1.61 5.35 -4.04 -0.02 1.59 16 24 C -0.12 -1.30 3.13 -90.62 -0.28 -1.59 16 25 C -0.15 -1.65 8.57 37.16 0.32 -1.33 16 26 C -0.14 -1.30 9.19 37.16 0.34 -0.95 16 27 C 0.11 1.66 6.30 -3.00 -0.02 1.64 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.11 2.16 3.34 -51.93 -0.17 1.99 16 32 H 0.11 2.20 7.37 -51.93 -0.38 1.81 16 33 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 35 H 0.10 1.79 7.89 -51.93 -0.41 1.38 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.79 5.65 -51.93 -0.29 0.50 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 1.44 6.89 -51.93 -0.36 1.08 16 46 H 0.08 1.12 5.90 -51.93 -0.31 0.81 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -30.17 374.02 -4.99 -35.16 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.83 Total: 7.29 kcal Atomic # 6 Polarization: 20.18 SS G_CDS: 0.85 Total: 21.03 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.12 Total: -41.02 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.54 Total: -42.22 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -4.23 Total: 14.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.17 -4.99 -35.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609992444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.098 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds