Wall clock time and date at job start Fri Apr 10 2020 18:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47350 * 2 1 4 4 C 1.52999 * 109.47003 * 175.00274 * 3 2 1 5 5 C 1.52999 * 109.46798 * 185.00003 * 4 3 2 6 6 N 1.46503 * 109.46778 * 294.99847 * 3 2 1 7 7 C 1.46759 * 124.34746 * 120.00147 * 6 3 2 8 8 C 1.54484 * 105.47429 * 163.00411 * 7 6 3 9 9 H 1.08999 * 110.96554 * 267.25542 * 8 7 6 10 10 C 1.50700 * 110.96809 * 143.53464 * 8 7 6 11 11 O 1.20829 * 120.00495 * 359.97438 * 10 8 7 12 12 O 1.34227 * 119.99875 * 179.97438 * 10 8 7 13 13 C 1.45195 * 117.00234 * 179.97438 * 12 10 8 14 14 C 1.50702 * 109.47182 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99928 * 179.72352 * 14 13 12 17 17 C 1.37101 * 120.00327 * 180.27606 * 16 14 13 18 18 H 1.08001 * 119.99426 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00412 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00042 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00013 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99593 * 21 19 17 23 23 H 1.48494 * 109.47201 * 209.99761 * 21 19 17 24 24 H 1.48498 * 109.47011 * 329.99735 * 21 19 17 25 25 C 1.54622 * 101.76522 * 25.41409 * 8 7 6 26 26 C 1.34419 * 124.34823 * 300.02306 * 6 3 2 27 27 O 1.21273 * 124.94840 * 0.35277 * 26 6 3 28 28 H 1.09000 * 109.47063 * 60.00159 * 1 2 3 29 29 H 1.08995 * 109.47570 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47284 * 300.00227 * 1 2 3 31 31 H 1.09001 * 109.47663 * 239.99874 * 2 1 3 32 32 H 1.09000 * 109.47063 * 119.99841 * 2 1 3 33 33 H 1.08995 * 109.47061 * 54.99893 * 3 2 1 34 34 H 1.09000 * 109.46937 * 304.99515 * 4 3 2 35 35 H 1.08995 * 109.47676 * 65.00190 * 4 3 2 36 36 H 1.09001 * 109.47268 * 59.99746 * 5 4 3 37 37 H 1.09000 * 109.47370 * 179.97438 * 5 4 3 38 38 H 1.09001 * 109.47491 * 299.99605 * 5 4 3 39 39 H 1.09004 * 110.24902 * 44.00218 * 7 6 3 40 40 H 1.09003 * 110.24958 * 282.00320 * 7 6 3 41 41 H 1.09004 * 109.47055 * 60.00127 * 13 12 10 42 42 H 1.09000 * 109.47653 * 300.00333 * 13 12 10 43 43 H 0.97000 * 120.00317 * 0.28382 * 16 14 13 44 44 H 0.97005 * 120.00014 * 180.02562 * 20 19 17 45 45 H 1.09004 * 110.48951 * 93.87878 * 25 8 7 46 46 H 1.08994 * 110.48697 * 216.52513 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1257 5 6 4.0645 2.8849 0.2511 6 7 1.6525 2.0974 -1.2519 7 6 0.8077 3.2948 -1.3330 8 6 1.0287 3.8597 -2.7537 9 1 1.8237 4.6055 -2.7576 10 6 -0.2484 4.4341 -3.3104 11 8 -1.2608 4.4070 -2.6514 12 8 -0.2614 4.9758 -4.5385 13 6 -1.5267 5.5093 -5.0103 14 6 -1.3487 6.0720 -6.3970 15 8 -0.2625 6.0274 -6.9349 16 7 -2.3980 6.6193 -7.0419 17 6 -2.2376 7.1262 -8.3056 18 1 -1.2703 7.0864 -8.7845 19 6 -3.3191 7.6909 -8.9702 20 7 -3.1654 8.1762 -10.1817 21 14 -4.9919 7.7603 -8.1417 22 1 -5.1149 9.0293 -7.3803 23 1 -6.0582 7.6965 -9.1731 24 1 -5.1322 6.6102 -7.2128 25 6 1.4525 2.5938 -3.5340 26 6 2.0246 1.6786 -2.4737 27 8 2.7185 0.7088 -2.6942 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6054 1.9815 0.8418 34 1 3.8570 0.8800 1.0113 35 1 4.0030 0.9836 -0.7597 36 1 3.6264 3.3457 1.1364 37 1 5.1508 2.8862 0.3410 38 1 3.7723 3.4493 -0.6345 39 1 1.1155 4.0250 -0.5845 40 1 -0.2397 3.0277 -1.1920 41 1 -1.8611 6.2995 -4.3381 42 1 -2.2707 4.7131 -5.0336 43 1 -3.2668 6.6548 -6.6119 44 1 -3.9204 8.5709 -10.6456 45 1 0.5878 2.1319 -4.0103 46 1 2.2121 2.8396 -4.2760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731241602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:18 Heat of formation + Delta-G solvation = -159.102653 kcal Electronic energy + Delta-G solvation = -28024.483903 eV Core-core repulsion = 23914.326960 eV Total energy + Delta-G solvation = -4110.156943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40783 -40.22947 -38.41965 -36.94985 -36.57466 -35.85266 -34.10645 -32.44453 -31.85175 -31.53093 -28.80725 -28.04677 -26.84397 -24.80659 -23.59167 -22.39887 -22.32899 -20.53523 -19.69920 -19.20120 -18.64445 -18.15965 -17.16404 -16.88940 -16.47688 -16.13919 -15.56249 -15.39338 -14.95256 -14.76554 -14.61377 -14.47415 -14.10193 -13.77009 -13.56876 -13.43316 -13.29598 -13.21977 -12.94913 -12.86389 -12.52499 -12.36382 -12.25934 -11.96508 -11.95560 -11.70445 -11.47715 -11.30081 -11.29083 -11.19602 -11.15423 -10.70018 -10.68264 -10.64709 -10.08365 -9.84016 -9.71383 -8.98364 -8.71917 -8.33026 -6.42344 -3.95558 1.98261 2.27072 2.33573 2.72283 2.95604 3.00330 3.09566 3.50499 3.83465 3.95822 4.00742 4.25792 4.30911 4.49429 4.58636 4.63368 4.71278 4.87589 4.91299 5.00142 5.06944 5.09003 5.12944 5.15220 5.21255 5.28101 5.41689 5.46426 5.48124 5.51726 5.53678 5.61781 5.62389 5.64230 5.78363 5.81581 5.92616 5.96556 6.32216 6.35532 6.80920 7.39967 7.59893 7.90626 7.97124 8.43804 8.80282 9.26175 9.61112 10.69813 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.002265 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.873626 B =12360.756116 C =12693.103696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.161 3.839 4 C -0.142 4.142 5 C -0.149 4.149 6 N -0.611 5.611 7 C 0.115 3.885 8 C -0.095 4.095 9 H 0.131 0.869 10 C 0.472 3.528 11 O -0.508 6.508 12 O -0.318 6.318 13 C 0.057 3.943 14 C 0.446 3.554 15 O -0.556 6.556 16 N -0.579 5.579 17 C -0.309 4.309 18 H 0.123 0.877 19 C 0.045 3.955 20 N -0.874 5.874 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.268 1.268 25 C -0.144 4.144 26 C 0.524 3.476 27 O -0.522 6.522 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.373 0.627 44 H 0.276 0.724 45 H 0.111 0.889 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.749 -11.582 24.209 27.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.059 3.941 4 C -0.180 4.180 5 C -0.206 4.206 6 N -0.346 5.346 7 C -0.008 4.008 8 C -0.115 4.115 9 H 0.149 0.851 10 C 0.314 3.686 11 O -0.396 6.396 12 O -0.232 6.232 13 C -0.020 4.020 14 C 0.231 3.769 15 O -0.438 6.438 16 N -0.219 5.219 17 C -0.437 4.437 18 H 0.140 0.860 19 C -0.159 4.159 20 N -0.513 5.513 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.194 1.194 25 C -0.184 4.184 26 C 0.312 3.688 27 O -0.398 6.398 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.206 0.794 44 H 0.087 0.913 45 H 0.129 0.871 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.465 -12.042 23.760 27.664 hybrid contribution -1.735 0.359 0.526 1.848 sum 5.731 -11.683 24.286 27.552 Atomic orbital electron populations 1.21729 0.95399 1.01725 1.01816 1.21957 0.96480 0.96012 1.03570 1.21104 0.94874 0.93320 0.84775 1.21957 0.94669 0.97999 1.03399 1.21731 1.00969 0.96313 1.01636 1.48354 1.50875 1.29016 1.06370 1.22055 0.96789 0.86994 0.94990 1.21836 0.95211 0.98897 0.95516 0.85092 1.23062 0.90144 0.75246 0.80120 1.90671 1.34965 1.54353 1.59633 1.86556 1.36906 1.68379 1.31316 1.22807 0.83449 0.99438 0.96317 1.19164 0.85957 0.85197 0.86588 1.90615 1.25338 1.60090 1.67758 1.42038 1.09250 1.54165 1.16406 1.19422 1.00062 1.35072 0.89135 0.85979 1.25044 0.98330 0.96800 0.95724 1.69614 1.32202 1.38018 1.11438 0.86675 0.84063 0.78916 0.79819 1.19400 1.19931 1.19363 1.22362 1.04410 0.93428 0.98248 1.20662 0.79418 0.84794 0.83938 1.90707 1.37817 1.27695 1.83611 0.92692 0.92684 0.92831 0.90149 0.90892 0.89298 0.90891 0.90142 0.92885 0.92649 0.92658 0.89306 0.88894 0.89248 0.89286 0.79390 0.91348 0.87132 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.80 37.16 0.36 -0.76 16 2 C -0.14 -1.09 5.36 -26.73 -0.14 -1.24 16 3 C 0.16 1.17 2.26 -67.93 -0.15 1.02 16 4 C -0.14 -1.04 5.36 -26.73 -0.14 -1.18 16 5 C -0.15 -0.99 9.80 37.16 0.36 -0.62 16 6 N -0.61 -5.14 1.74 -164.84 -0.29 -5.42 16 7 C 0.11 0.87 6.66 -3.12 -0.02 0.85 16 8 C -0.09 -0.85 3.66 -90.14 -0.33 -1.18 16 9 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 10 C 0.47 5.94 7.19 36.01 0.26 6.19 16 11 O -0.51 -7.07 15.25 -18.75 -0.29 -7.35 16 12 O -0.32 -5.05 9.75 -45.90 -0.45 -5.50 16 13 C 0.06 0.95 5.94 36.01 0.21 1.16 16 14 C 0.45 9.88 7.86 -10.98 -0.09 9.80 16 15 O -0.56 -14.76 16.08 -14.11 -0.23 -14.99 16 16 N -0.58 -13.30 5.09 -10.96 -0.06 -13.35 16 17 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 18 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 19 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 20 N -0.87 -24.76 13.96 55.50 0.77 -23.98 16 21 Si 0.88 18.63 27.74 -169.99 -4.71 13.92 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.27 -5.15 6.52 56.52 0.37 -4.79 16 25 C -0.14 -1.40 6.41 -26.74 -0.17 -1.58 16 26 C 0.52 5.67 7.37 -10.85 -0.08 5.59 16 27 O -0.52 -7.31 15.02 5.56 0.08 -7.22 16 28 H 0.05 0.49 7.75 -51.93 -0.40 0.08 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.82 6.62 -51.93 -0.34 0.48 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.80 6.65 -51.93 -0.35 0.45 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 0.41 7.75 -51.93 -0.40 0.01 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.79 6.96 -51.93 -0.36 0.43 16 41 H 0.09 1.28 8.13 -51.93 -0.42 0.85 16 42 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 43 H 0.37 7.41 5.76 -40.82 -0.24 7.18 16 44 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.11 1.10 7.89 -51.93 -0.41 0.69 16 46 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -33.82 381.38 -6.71 -40.53 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.13 Total: 7.08 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -0.17 Total: 10.54 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.43 Total: -42.76 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.88 Total: -35.06 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.71 Total: 13.92 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.82 -6.71 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.572 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds