Wall clock time and date at job start Fri Apr 10 2020 18:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47350 * 2 1 4 4 C 1.52999 * 109.47003 * 175.00274 * 3 2 1 5 5 C 1.52999 * 109.46798 * 185.00003 * 4 3 2 6 6 N 1.46503 * 109.46778 * 294.99847 * 3 2 1 7 7 C 1.46759 * 124.34746 * 120.00147 * 6 3 2 8 8 C 1.54484 * 105.47429 * 163.00411 * 7 6 3 9 9 H 1.08999 * 110.96554 * 267.25542 * 8 7 6 10 10 C 1.50700 * 110.96809 * 143.53464 * 8 7 6 11 11 O 1.20829 * 120.00495 * 359.97438 * 10 8 7 12 12 O 1.34227 * 119.99875 * 179.97438 * 10 8 7 13 13 C 1.45195 * 117.00234 * 179.97438 * 12 10 8 14 14 C 1.50702 * 109.47182 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99928 * 179.72352 * 14 13 12 17 17 C 1.37101 * 120.00327 * 180.27606 * 16 14 13 18 18 H 1.08001 * 119.99426 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00412 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00042 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00013 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99593 * 21 19 17 23 23 H 1.48494 * 109.47201 * 209.99761 * 21 19 17 24 24 H 1.48498 * 109.47011 * 329.99735 * 21 19 17 25 25 C 1.54622 * 101.76522 * 25.41409 * 8 7 6 26 26 C 1.34419 * 124.34823 * 300.02306 * 6 3 2 27 27 O 1.21273 * 124.94840 * 0.35277 * 26 6 3 28 28 H 1.09000 * 109.47063 * 60.00159 * 1 2 3 29 29 H 1.08995 * 109.47570 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47284 * 300.00227 * 1 2 3 31 31 H 1.09001 * 109.47663 * 239.99874 * 2 1 3 32 32 H 1.09000 * 109.47063 * 119.99841 * 2 1 3 33 33 H 1.08995 * 109.47061 * 54.99893 * 3 2 1 34 34 H 1.09000 * 109.46937 * 304.99515 * 4 3 2 35 35 H 1.08995 * 109.47676 * 65.00190 * 4 3 2 36 36 H 1.09001 * 109.47268 * 59.99746 * 5 4 3 37 37 H 1.09000 * 109.47370 * 179.97438 * 5 4 3 38 38 H 1.09001 * 109.47491 * 299.99605 * 5 4 3 39 39 H 1.09004 * 110.24902 * 44.00218 * 7 6 3 40 40 H 1.09003 * 110.24958 * 282.00320 * 7 6 3 41 41 H 1.09004 * 109.47055 * 60.00127 * 13 12 10 42 42 H 1.09000 * 109.47653 * 300.00333 * 13 12 10 43 43 H 0.97000 * 120.00317 * 0.28382 * 16 14 13 44 44 H 0.97005 * 120.00014 * 180.02562 * 20 19 17 45 45 H 1.09004 * 110.48951 * 93.87878 * 25 8 7 46 46 H 1.08994 * 110.48697 * 216.52513 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1257 5 6 4.0645 2.8849 0.2511 6 7 1.6525 2.0974 -1.2519 7 6 0.8077 3.2948 -1.3330 8 6 1.0287 3.8597 -2.7537 9 1 1.8237 4.6055 -2.7576 10 6 -0.2484 4.4341 -3.3104 11 8 -1.2608 4.4070 -2.6514 12 8 -0.2614 4.9758 -4.5385 13 6 -1.5267 5.5093 -5.0103 14 6 -1.3487 6.0720 -6.3970 15 8 -0.2625 6.0274 -6.9349 16 7 -2.3980 6.6193 -7.0419 17 6 -2.2376 7.1262 -8.3056 18 1 -1.2703 7.0864 -8.7845 19 6 -3.3191 7.6909 -8.9702 20 7 -3.1654 8.1762 -10.1817 21 14 -4.9919 7.7603 -8.1417 22 1 -5.1149 9.0293 -7.3803 23 1 -6.0582 7.6965 -9.1731 24 1 -5.1322 6.6102 -7.2128 25 6 1.4525 2.5938 -3.5340 26 6 2.0246 1.6786 -2.4737 27 8 2.7185 0.7088 -2.6942 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6054 1.9815 0.8418 34 1 3.8570 0.8800 1.0113 35 1 4.0030 0.9836 -0.7597 36 1 3.6264 3.3457 1.1364 37 1 5.1508 2.8862 0.3410 38 1 3.7723 3.4493 -0.6345 39 1 1.1155 4.0250 -0.5845 40 1 -0.2397 3.0277 -1.1920 41 1 -1.8611 6.2995 -4.3381 42 1 -2.2707 4.7131 -5.0336 43 1 -3.2668 6.6548 -6.6119 44 1 -3.9204 8.5709 -10.6456 45 1 0.5878 2.1319 -4.0103 46 1 2.2121 2.8396 -4.2760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731241602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:17 Heat of formation + Delta-G solvation = -180.567167 kcal Electronic energy + Delta-G solvation = -28025.414674 eV Core-core repulsion = 23914.326960 eV Total energy + Delta-G solvation = -4111.087714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28020 -41.25614 -40.14923 -37.87792 -37.56385 -36.67387 -36.07490 -33.85887 -33.00814 -32.29543 -30.21994 -28.84186 -27.49866 -26.50450 -24.61173 -23.06894 -22.89463 -21.54802 -21.47349 -20.51913 -19.97171 -19.10711 -18.02298 -17.90316 -17.73510 -17.41950 -16.94369 -16.52512 -16.16410 -15.81523 -15.52709 -15.41008 -15.24338 -14.81612 -14.68266 -14.59227 -14.23932 -14.09938 -13.93155 -13.88286 -13.78625 -13.63481 -13.40506 -12.99592 -12.68832 -12.56155 -12.49066 -12.45237 -12.08189 -12.00329 -11.91684 -11.86487 -11.78089 -11.73839 -11.66509 -11.57561 -10.67912 -10.59166 -10.33353 -9.68812 -8.45251 -6.08533 0.99448 1.23343 1.31458 1.34510 1.45500 1.50045 1.77554 1.97556 2.21036 2.75828 3.09277 3.12420 3.25989 3.61449 3.65834 3.81468 3.89567 4.02132 4.05103 4.13275 4.15505 4.17477 4.35078 4.44234 4.47988 4.55177 4.57668 4.60551 4.73216 4.81815 4.90160 4.94768 5.05597 5.10461 5.19371 5.22666 5.26614 5.35336 5.39882 5.48528 5.69054 5.86416 6.07734 6.45269 6.58155 6.78646 7.10830 7.26854 7.79229 8.71360 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.002265 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.873626 B =12360.756116 C =12693.103696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.157 3.843 4 C -0.139 4.139 5 C -0.147 4.147 6 N -0.602 5.602 7 C 0.119 3.881 8 C -0.086 4.086 9 H 0.154 0.846 10 C 0.478 3.522 11 O -0.516 6.516 12 O -0.341 6.341 13 C 0.068 3.932 14 C 0.447 3.553 15 O -0.609 6.609 16 N -0.577 5.577 17 C -0.333 4.333 18 H 0.060 0.940 19 C -0.010 4.010 20 N -0.927 5.927 21 Si 0.962 3.038 22 H -0.254 1.254 23 H -0.274 1.274 24 H -0.230 1.230 25 C -0.145 4.145 26 C 0.520 3.480 27 O -0.562 6.562 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.393 0.607 44 H 0.282 0.718 45 H 0.105 0.895 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.690 -11.434 28.213 30.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.056 3.944 4 C -0.177 4.177 5 C -0.204 4.204 6 N -0.335 5.335 7 C -0.003 4.003 8 C -0.105 4.105 9 H 0.171 0.829 10 C 0.321 3.679 11 O -0.405 6.405 12 O -0.256 6.256 13 C -0.009 4.009 14 C 0.234 3.766 15 O -0.493 6.493 16 N -0.219 5.219 17 C -0.461 4.461 18 H 0.078 0.922 19 C -0.209 4.209 20 N -0.566 5.566 21 Si 0.782 3.218 22 H -0.178 1.178 23 H -0.199 1.199 24 H -0.153 1.153 25 C -0.185 4.185 26 C 0.308 3.692 27 O -0.441 6.441 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.229 0.771 44 H 0.091 0.909 45 H 0.124 0.876 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.392 -11.894 27.818 30.730 hybrid contribution -0.961 0.266 -0.728 1.235 sum 4.430 -11.627 27.090 29.810 Atomic orbital electron populations 1.21703 0.95098 1.01748 1.01786 1.21927 0.96654 0.96326 1.02880 1.21308 0.94966 0.93250 0.84868 1.21915 0.94582 0.98586 1.02614 1.21717 1.01034 0.95612 1.02037 1.48410 1.50020 1.28966 1.06109 1.22164 0.96500 0.87008 0.94665 1.21920 0.94038 0.98721 0.95846 0.82877 1.23546 0.91079 0.74454 0.78815 1.90668 1.35590 1.54698 1.59514 1.86560 1.36695 1.69120 1.33188 1.22629 0.84469 1.01166 0.92657 1.20256 0.84695 0.83206 0.88409 1.90593 1.27483 1.61547 1.69690 1.41822 1.10614 1.54362 1.15102 1.18989 0.98327 1.37420 0.91391 0.92199 1.26112 1.03444 0.95244 0.96145 1.69788 1.34208 1.38981 1.13644 0.85406 0.76377 0.80822 0.79234 1.17850 1.19902 1.15307 1.22337 1.04167 0.93786 0.98245 1.20798 0.79064 0.84373 0.84919 1.90690 1.39722 1.29388 1.84282 0.94306 0.92775 0.91087 0.93296 0.89145 0.86461 0.89346 0.93301 0.91033 0.92819 0.93494 0.86225 0.89217 0.86059 0.86532 0.77060 0.90866 0.87638 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.80 71.98 0.71 -1.24 16 2 C -0.14 -1.97 5.36 30.59 0.16 -1.81 16 3 C 0.16 1.93 2.26 44.99 0.10 2.03 16 4 C -0.14 -1.82 5.36 30.59 0.16 -1.66 16 5 C -0.15 -1.61 9.80 71.98 0.71 -0.91 16 6 N -0.60 -9.05 1.74 -794.02 -1.38 -10.43 16 7 C 0.12 1.43 6.66 86.83 0.58 2.01 16 8 C -0.09 -1.34 3.66 -10.48 -0.04 -1.38 16 9 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 10 C 0.48 10.78 7.19 71.24 0.51 11.30 16 11 O -0.52 -12.62 15.25 21.96 0.33 -12.29 16 12 O -0.34 -10.21 9.75 -45.04 -0.44 -10.65 16 13 C 0.07 2.05 5.94 71.24 0.42 2.48 16 14 C 0.45 19.70 7.86 87.66 0.69 20.39 16 15 O -0.61 -33.42 16.08 15.73 0.25 -33.17 16 16 N -0.58 -26.20 5.09 -306.98 -1.56 -27.76 16 17 C -0.33 -18.88 10.16 84.04 0.85 -18.03 16 18 H 0.06 4.06 7.39 -2.91 -0.02 4.04 16 19 C -0.01 -0.52 5.50 84.92 0.47 -0.05 16 20 N -0.93 -54.28 13.96 21.66 0.30 -53.98 16 21 Si 0.96 37.05 27.74 68.60 1.90 38.95 16 22 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 23 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 24 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 25 C -0.15 -2.75 6.41 30.59 0.20 -2.55 16 26 C 0.52 11.15 7.37 87.90 0.65 11.80 16 27 O -0.56 -16.35 15.02 -3.01 -0.05 -16.39 16 28 H 0.04 0.64 7.75 -2.39 -0.02 0.62 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 1.02 6.62 -2.39 -0.02 1.01 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.12 0.84 8.07 -2.39 -0.02 0.82 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.98 6.65 -2.39 -0.02 0.96 16 36 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.05 0.59 7.75 -2.39 -0.02 0.57 16 39 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.09 1.23 6.96 -2.39 -0.02 1.21 16 41 H 0.12 2.96 8.13 -2.38 -0.02 2.94 16 42 H 0.12 2.95 8.13 -2.39 -0.02 2.93 16 43 H 0.39 14.48 5.76 -92.71 -0.53 13.94 16 44 H 0.28 15.03 8.31 -92.70 -0.77 14.26 16 45 H 0.11 2.10 7.89 -2.39 -0.02 2.08 16 46 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -79.96 381.38 5.94 -74.02 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.40 Total: 29.31 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 6.17 Total: 22.38 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -2.64 Total: -92.17 kcal Atomic # 8 Polarization: -72.60 SS G_CDS: 0.10 Total: -72.50 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 1.90 Total: 38.95 kcal Total: -79.96 5.94 -74.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.546 kcal (2) G-P(sol) polarization free energy of solvation -79.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds