Wall clock time and date at job start Fri Apr 10 2020 18:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47279 * 2 1 4 4 C 1.50696 * 109.46862 * 179.97438 * 3 2 1 5 5 O 1.21275 * 120.00511 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99734 * 179.97438 * 4 3 2 7 7 C 1.46930 * 120.62970 * 6.11814 * 6 4 3 8 8 C 1.53199 * 108.77378 * 233.58378 * 7 6 4 9 9 C 1.53039 * 109.31240 * 305.36586 * 8 7 6 10 10 C 1.53070 * 109.65985 * 61.30056 * 9 8 7 11 11 C 1.46927 * 120.63011 * 186.09211 * 6 4 3 12 12 H 1.09003 * 109.58306 * 246.34247 * 11 6 4 13 13 C 1.50701 * 109.58598 * 6.62965 * 11 6 4 14 14 O 1.20821 * 120.00151 * 61.45274 * 13 11 6 15 15 O 1.34232 * 119.99688 * 241.45238 * 13 11 6 16 16 C 1.45196 * 116.99694 * 179.97438 * 15 13 11 17 17 C 1.50701 * 109.46880 * 180.02562 * 16 15 13 18 18 O 1.21292 * 120.00118 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99804 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99839 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99910 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00113 * 179.97438 * 20 19 17 23 23 N 1.31423 * 119.99808 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00419 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47029 * 270.00458 * 24 22 20 26 26 H 1.48496 * 109.46882 * 30.00000 * 24 22 20 27 27 H 1.48493 * 109.47433 * 150.00247 * 24 22 20 28 28 H 1.08996 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47342 * 300.00110 * 1 2 3 30 30 H 1.09002 * 109.46720 * 59.99996 * 1 2 3 31 31 H 1.08995 * 109.46878 * 239.99851 * 2 1 3 32 32 H 1.09002 * 109.46720 * 120.00004 * 2 1 3 33 33 H 1.09001 * 109.46437 * 60.00173 * 3 2 1 34 34 H 1.08995 * 109.47169 * 300.00359 * 3 2 1 35 35 H 1.08998 * 109.58429 * 353.36969 * 7 6 4 36 36 H 1.09000 * 109.58398 * 113.65381 * 7 6 4 37 37 H 1.08996 * 109.49564 * 65.31587 * 8 7 6 38 38 H 1.08992 * 109.49461 * 185.41456 * 8 7 6 39 39 H 1.08993 * 109.45844 * 181.38731 * 9 8 7 40 40 H 1.09002 * 109.45918 * 301.36197 * 9 8 7 41 41 H 1.09001 * 109.62346 * 178.83237 * 10 9 8 42 42 H 1.09000 * 109.39481 * 58.72048 * 10 9 8 43 43 H 1.09004 * 109.46809 * 60.00812 * 16 15 13 44 44 H 1.08996 * 109.47404 * 300.00195 * 16 15 13 45 45 H 0.96996 * 119.99766 * 0.02562 * 19 17 16 46 46 H 0.97001 * 119.99881 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2210 2.6096 0.0002 7 6 3.5066 3.8866 0.1339 8 6 3.9079 4.8001 -1.0286 9 6 5.4320 4.9333 -1.0648 10 6 6.0640 3.5577 -1.2912 11 6 5.6840 2.6292 -0.1333 12 1 6.1304 2.9962 0.7909 13 6 6.1841 1.2363 -0.4177 14 8 5.8306 0.6603 -1.4192 15 8 7.0221 0.6357 0.4418 16 6 7.4626 -0.7060 0.1040 17 6 8.3905 -1.2151 1.1769 18 8 8.6542 -0.5160 2.1324 19 7 8.9273 -2.4472 1.0746 20 6 9.7710 -2.9105 2.0509 21 1 10.0058 -2.2880 2.9017 22 6 10.3240 -4.1808 1.9458 23 7 10.0386 -4.9380 0.9102 24 14 11.4741 -4.8118 3.2755 25 1 12.8725 -4.4456 2.9352 26 1 11.1059 -4.2022 4.5785 27 1 11.3583 -6.2892 3.3699 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 2.4316 3.7086 0.1046 36 1 3.7734 4.3572 1.0802 37 1 3.5579 4.3698 -1.9669 38 1 3.4599 5.7839 -0.8895 39 1 5.7188 5.6025 -1.8759 40 1 5.7835 5.3403 -0.1166 41 1 7.1485 3.6562 -1.3375 42 1 5.6958 3.1400 -2.2282 43 1 7.9872 -0.6865 -0.8513 44 1 6.5973 -1.3647 0.0300 45 1 8.7166 -3.0060 0.3103 46 1 9.4417 -4.6102 0.2195 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:27 Heat of formation + Delta-G solvation = -162.243697 kcal Electronic energy + Delta-G solvation = -28718.005265 eV Core-core repulsion = 24607.712116 eV Total energy + Delta-G solvation = -4110.293149 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24364 -39.40989 -38.11919 -37.75527 -35.85252 -34.62842 -34.24649 -33.27109 -31.98793 -31.14504 -28.48035 -28.23755 -25.91716 -24.53172 -23.95843 -22.55082 -21.17908 -20.81380 -19.81154 -19.12007 -18.00240 -17.83758 -16.99874 -16.72343 -16.24727 -16.05574 -15.72456 -15.36852 -14.96297 -14.68812 -14.45740 -14.34047 -14.15093 -13.85680 -13.72435 -13.52634 -13.22415 -13.11569 -12.89969 -12.35476 -12.17927 -12.04213 -11.93601 -11.71582 -11.57202 -11.39310 -11.25633 -11.20617 -11.08632 -10.96430 -10.94814 -10.23713 -10.19882 -10.04858 -9.86750 -9.72230 -9.55899 -8.98006 -8.45790 -8.05284 -6.75528 -3.89276 2.16107 2.44109 2.80585 3.00145 3.31589 3.36858 3.56746 3.80153 4.15636 4.27766 4.30558 4.43859 4.50076 4.58556 4.61111 4.71720 4.75018 4.84344 5.01624 5.05646 5.15966 5.20909 5.21860 5.24383 5.31025 5.34297 5.40989 5.43152 5.51447 5.58989 5.64397 5.66188 5.81634 5.82022 5.91659 5.93392 5.93828 6.06605 6.15788 6.86232 7.04099 7.77130 7.92721 8.07033 8.18872 8.57775 8.76813 9.44462 9.82102 10.67758 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.002883 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.590937 B = 9710.415697 C =10943.119692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.131 4.131 4 C 0.506 3.494 5 O -0.503 6.503 6 N -0.610 5.610 7 C 0.110 3.890 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.125 4.125 11 C 0.156 3.844 12 H 0.104 0.896 13 C 0.476 3.524 14 O -0.502 6.502 15 O -0.326 6.326 16 C 0.069 3.931 17 C 0.445 3.555 18 O -0.571 6.571 19 N -0.568 5.568 20 C -0.383 4.383 21 H 0.102 0.898 22 C -0.008 4.008 23 N -0.898 5.898 24 Si 1.096 2.904 25 H -0.284 1.284 26 H -0.283 1.283 27 H -0.280 1.280 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.378 0.622 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.273 20.348 -5.657 27.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.171 4.171 4 C 0.295 3.705 5 O -0.377 6.377 6 N -0.348 5.348 7 C -0.012 4.012 8 C -0.176 4.176 9 C -0.155 4.155 10 C -0.163 4.163 11 C 0.052 3.948 12 H 0.122 0.878 13 C 0.319 3.681 14 O -0.390 6.390 15 O -0.241 6.241 16 C -0.009 4.009 17 C 0.230 3.770 18 O -0.454 6.454 19 N -0.207 5.207 20 C -0.512 4.512 21 H 0.119 0.881 22 C -0.211 4.211 23 N -0.537 5.537 24 Si 0.922 3.078 25 H -0.210 1.210 26 H -0.208 1.208 27 H -0.206 1.206 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.211 0.789 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.917 18.704 -4.814 25.675 hybrid contribution -1.136 1.009 -1.123 1.889 sum -18.053 19.713 -5.937 27.381 Atomic orbital electron populations 1.21778 0.95378 1.02100 1.01559 1.21323 0.95275 0.94497 1.04007 1.21692 0.90860 1.00489 1.04050 1.20974 0.90831 0.83006 0.75675 1.90782 1.68427 1.30862 1.47653 1.48091 1.05080 1.07012 1.74580 1.21821 0.97095 0.83155 0.99103 1.21962 0.96704 0.99905 0.99053 1.21506 0.94919 0.96122 1.02907 1.21901 1.01986 0.94760 0.97645 1.20651 0.81512 0.91137 1.01531 0.87810 1.22620 0.76158 0.87674 0.81687 1.90613 1.54740 1.64689 1.28931 1.86457 1.58537 1.30322 1.48767 1.22592 0.98762 0.81163 0.98361 1.19320 0.85571 0.83647 0.88465 1.90545 1.63918 1.56993 1.33957 1.41774 1.42582 1.13336 1.22971 1.20591 1.24400 1.02524 1.03642 0.88060 1.26578 1.00098 0.92327 1.02088 1.70863 1.34690 1.38394 1.09760 0.83066 0.74933 0.76142 0.73686 1.21031 1.20847 1.20578 0.92283 0.92726 0.92781 0.91018 0.91034 0.88888 0.88865 0.89083 0.90638 0.91120 0.90179 0.90769 0.91118 0.89695 0.90105 0.90123 0.89489 0.78874 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.11 -1.15 5.22 -26.73 -0.14 -1.29 16 3 C -0.13 -1.15 4.06 -27.88 -0.11 -1.26 16 4 C 0.51 6.80 7.39 -10.99 -0.08 6.72 16 5 O -0.50 -9.40 11.75 -21.15 -0.25 -9.65 16 6 N -0.61 -6.78 2.97 -166.52 -0.50 -7.28 16 7 C 0.11 0.68 6.35 -3.71 -0.02 0.66 16 8 C -0.14 -0.71 6.09 -26.61 -0.16 -0.88 16 9 C -0.12 -0.73 5.88 -26.67 -0.16 -0.89 16 10 C -0.12 -1.22 5.33 -26.59 -0.14 -1.36 16 11 C 0.16 2.03 3.34 -68.75 -0.23 1.80 16 12 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 13 C 0.48 8.73 4.50 36.01 0.16 8.89 16 14 O -0.50 -10.15 14.36 -26.91 -0.39 -10.54 16 15 O -0.33 -7.01 9.75 -46.82 -0.46 -7.46 16 16 C 0.07 1.51 5.94 36.01 0.21 1.72 16 17 C 0.44 11.68 7.86 -10.98 -0.09 11.60 16 18 O -0.57 -17.02 16.08 -14.11 -0.23 -17.24 16 19 N -0.57 -15.26 5.28 -10.96 -0.06 -15.32 16 20 C -0.38 -11.17 9.68 -14.93 -0.14 -11.31 16 21 H 0.10 3.10 7.16 -52.48 -0.38 2.73 16 22 C -0.01 -0.23 5.50 -17.47 -0.10 -0.32 16 23 N -0.90 -25.87 13.68 55.50 0.76 -25.11 16 24 Si 1.10 24.82 29.92 -169.99 -5.09 19.74 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.09 0.59 7.69 -51.93 -0.40 0.20 16 34 H 0.09 0.62 7.94 -51.93 -0.41 0.21 16 35 H 0.09 0.37 5.93 -51.93 -0.31 0.06 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 43 H 0.08 1.60 8.13 -51.93 -0.42 1.18 16 44 H 0.09 1.88 8.13 -51.93 -0.42 1.45 16 45 H 0.38 9.39 6.73 -40.82 -0.27 9.12 16 46 H 0.26 7.33 6.78 -40.82 -0.28 7.05 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -38.79 376.21 -8.33 -47.11 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.17 Total: 6.75 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -0.63 Total: 13.33 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.21 Total: -47.70 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -1.32 Total: -44.89 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.09 Total: 19.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.79 -8.33 -47.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.130 kcal (2) G-P(sol) polarization free energy of solvation -38.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds