Wall clock time and date at job start Fri Apr 10 2020 18:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47279 * 2 1 4 4 C 1.50696 * 109.46862 * 179.97438 * 3 2 1 5 5 O 1.21275 * 120.00511 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99734 * 179.97438 * 4 3 2 7 7 C 1.46930 * 120.62970 * 6.11814 * 6 4 3 8 8 C 1.53199 * 108.77378 * 233.58378 * 7 6 4 9 9 C 1.53039 * 109.31240 * 305.36586 * 8 7 6 10 10 C 1.53070 * 109.65985 * 61.30056 * 9 8 7 11 11 C 1.46927 * 120.63011 * 186.09211 * 6 4 3 12 12 H 1.09003 * 109.58306 * 246.34247 * 11 6 4 13 13 C 1.50701 * 109.58598 * 6.62965 * 11 6 4 14 14 O 1.20821 * 120.00151 * 61.45274 * 13 11 6 15 15 O 1.34232 * 119.99688 * 241.45238 * 13 11 6 16 16 C 1.45196 * 116.99694 * 179.97438 * 15 13 11 17 17 C 1.50701 * 109.46880 * 180.02562 * 16 15 13 18 18 O 1.21292 * 120.00118 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99804 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99839 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99910 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00113 * 179.97438 * 20 19 17 23 23 N 1.31423 * 119.99808 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00419 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47029 * 270.00458 * 24 22 20 26 26 H 1.48496 * 109.46882 * 30.00000 * 24 22 20 27 27 H 1.48493 * 109.47433 * 150.00247 * 24 22 20 28 28 H 1.08996 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47342 * 300.00110 * 1 2 3 30 30 H 1.09002 * 109.46720 * 59.99996 * 1 2 3 31 31 H 1.08995 * 109.46878 * 239.99851 * 2 1 3 32 32 H 1.09002 * 109.46720 * 120.00004 * 2 1 3 33 33 H 1.09001 * 109.46437 * 60.00173 * 3 2 1 34 34 H 1.08995 * 109.47169 * 300.00359 * 3 2 1 35 35 H 1.08998 * 109.58429 * 353.36969 * 7 6 4 36 36 H 1.09000 * 109.58398 * 113.65381 * 7 6 4 37 37 H 1.08996 * 109.49564 * 65.31587 * 8 7 6 38 38 H 1.08992 * 109.49461 * 185.41456 * 8 7 6 39 39 H 1.08993 * 109.45844 * 181.38731 * 9 8 7 40 40 H 1.09002 * 109.45918 * 301.36197 * 9 8 7 41 41 H 1.09001 * 109.62346 * 178.83237 * 10 9 8 42 42 H 1.09000 * 109.39481 * 58.72048 * 10 9 8 43 43 H 1.09004 * 109.46809 * 60.00812 * 16 15 13 44 44 H 1.08996 * 109.47404 * 300.00195 * 16 15 13 45 45 H 0.96996 * 119.99766 * 0.02562 * 19 17 16 46 46 H 0.97001 * 119.99881 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2210 2.6096 0.0002 7 6 3.5066 3.8866 0.1339 8 6 3.9079 4.8001 -1.0286 9 6 5.4320 4.9333 -1.0648 10 6 6.0640 3.5577 -1.2912 11 6 5.6840 2.6292 -0.1333 12 1 6.1304 2.9962 0.7909 13 6 6.1841 1.2363 -0.4177 14 8 5.8306 0.6603 -1.4192 15 8 7.0221 0.6357 0.4418 16 6 7.4626 -0.7060 0.1040 17 6 8.3905 -1.2151 1.1769 18 8 8.6542 -0.5160 2.1324 19 7 8.9273 -2.4472 1.0746 20 6 9.7710 -2.9105 2.0509 21 1 10.0058 -2.2880 2.9017 22 6 10.3240 -4.1808 1.9458 23 7 10.0386 -4.9380 0.9102 24 14 11.4741 -4.8118 3.2755 25 1 12.8725 -4.4456 2.9352 26 1 11.1059 -4.2022 4.5785 27 1 11.3583 -6.2892 3.3699 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 2.4316 3.7086 0.1046 36 1 3.7734 4.3572 1.0802 37 1 3.5579 4.3698 -1.9669 38 1 3.4599 5.7839 -0.8895 39 1 5.7188 5.6025 -1.8759 40 1 5.7835 5.3403 -0.1166 41 1 7.1485 3.6562 -1.3375 42 1 5.6958 3.1400 -2.2282 43 1 7.9872 -0.6865 -0.8513 44 1 6.5973 -1.3647 0.0300 45 1 8.7166 -3.0060 0.3103 46 1 9.4417 -4.6102 0.2195 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:26 Heat of formation + Delta-G solvation = -187.797123 kcal Electronic energy + Delta-G solvation = -28719.113345 eV Core-core repulsion = 24607.712116 eV Total energy + Delta-G solvation = -4111.401229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.39207 -40.89793 -40.04517 -38.65465 -37.45061 -36.45680 -35.45199 -34.02674 -33.37649 -32.77499 -30.11641 -29.10968 -26.94382 -26.24501 -24.99587 -23.42817 -22.26652 -21.80841 -21.64385 -20.14837 -20.03864 -19.19054 -18.45190 -18.15398 -17.66405 -17.13295 -17.04519 -16.79220 -16.51669 -15.76503 -15.64876 -15.53429 -15.20946 -15.20557 -14.85008 -14.83986 -14.24651 -14.15230 -13.92590 -13.71548 -13.57001 -13.43647 -12.92445 -12.84995 -12.72726 -12.59957 -12.24393 -12.05900 -12.00491 -11.92590 -11.90936 -11.79863 -11.70960 -11.64999 -11.63636 -11.39502 -10.78955 -10.64381 -10.25746 -9.85055 -9.04158 -6.19856 0.96864 1.32435 1.40592 1.49939 1.53604 1.81087 1.82147 1.93414 2.37854 2.78903 3.05377 3.39619 3.62111 3.65212 3.75396 3.82449 3.89997 3.92176 3.97700 4.02025 4.03174 4.05519 4.14673 4.39431 4.51613 4.59583 4.64167 4.67077 4.73124 4.80343 4.83426 5.00017 5.07534 5.15773 5.19506 5.20749 5.28492 5.38120 5.41276 5.42947 5.50778 5.82142 6.18575 6.37783 6.53043 6.69090 7.02198 7.23856 7.65952 8.42394 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.002883 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.590937 B = 9710.415697 C =10943.119692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.120 4.120 4 C 0.490 3.510 5 O -0.569 6.569 6 N -0.605 5.605 7 C 0.100 3.900 8 C -0.133 4.133 9 C -0.113 4.113 10 C -0.119 4.119 11 C 0.156 3.844 12 H 0.111 0.889 13 C 0.470 3.530 14 O -0.526 6.526 15 O -0.349 6.349 16 C 0.083 3.917 17 C 0.443 3.557 18 O -0.610 6.610 19 N -0.571 5.571 20 C -0.415 4.415 21 H 0.080 0.920 22 C -0.038 4.038 23 N -0.909 5.909 24 Si 1.141 2.859 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.270 1.270 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.387 0.613 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.872 22.883 -5.641 30.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.159 4.159 4 C 0.281 3.719 5 O -0.448 6.448 6 N -0.342 5.342 7 C -0.020 4.020 8 C -0.171 4.171 9 C -0.150 4.150 10 C -0.157 4.157 11 C 0.051 3.949 12 H 0.129 0.871 13 C 0.315 3.685 14 O -0.415 6.415 15 O -0.264 6.264 16 C 0.005 3.995 17 C 0.230 3.770 18 O -0.496 6.496 19 N -0.210 5.210 20 C -0.543 4.543 21 H 0.098 0.902 22 C -0.237 4.237 23 N -0.547 5.547 24 Si 0.959 3.041 25 H -0.191 1.191 26 H -0.200 1.200 27 H -0.195 1.195 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.105 0.895 45 H 0.221 0.779 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.559 21.302 -4.843 28.665 hybrid contribution -0.687 0.263 -1.176 1.388 sum -19.246 21.566 -6.020 29.525 Atomic orbital electron populations 1.21725 0.92726 1.02362 1.03193 1.21286 0.97452 0.95236 1.01252 1.21755 0.87236 0.99937 1.06967 1.21942 0.92818 0.82620 0.74514 1.90747 1.69789 1.33309 1.50971 1.48355 1.04191 1.08437 1.73224 1.22301 0.98218 0.80941 1.00490 1.21976 0.95734 1.01198 0.98201 1.21549 0.95706 0.93586 1.04167 1.21939 1.02368 0.96108 0.95326 1.20854 0.83065 0.87826 1.03187 0.87136 1.23744 0.74831 0.89206 0.80765 1.90578 1.55214 1.65749 1.29974 1.86468 1.59798 1.29753 1.50405 1.22272 0.97827 0.82149 0.97208 1.19990 0.85269 0.83038 0.88720 1.90502 1.65349 1.57976 1.35785 1.41800 1.42428 1.13778 1.22975 1.20651 1.26243 1.03292 1.04123 0.90202 1.28083 1.00478 0.91848 1.03244 1.70941 1.34920 1.38686 1.10172 0.82561 0.73892 0.76147 0.71486 1.19097 1.19969 1.19493 0.92849 0.90995 0.91094 0.93975 0.93831 0.85487 0.85834 0.86268 0.88933 0.91767 0.86881 0.89162 0.89943 0.89728 0.91772 0.88087 0.89532 0.77886 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.11 -2.32 5.22 30.60 0.16 -2.16 16 3 C -0.12 -1.86 4.06 29.85 0.12 -1.74 16 4 C 0.49 13.06 7.39 87.66 0.65 13.71 16 5 O -0.57 -22.38 11.75 22.53 0.26 -22.12 16 6 N -0.61 -12.61 2.97 -799.15 -2.38 -14.99 16 7 C 0.10 0.85 6.35 86.36 0.55 1.40 16 8 C -0.13 -0.83 6.09 30.67 0.19 -0.64 16 9 C -0.11 -1.06 5.88 30.63 0.18 -0.88 16 10 C -0.12 -2.21 5.33 30.68 0.16 -2.05 16 11 C 0.16 4.00 3.34 44.23 0.15 4.15 16 12 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 13 C 0.47 17.90 4.50 71.24 0.32 18.22 16 14 O -0.53 -22.28 14.36 29.78 0.43 -21.85 16 15 O -0.35 -15.66 9.75 -44.21 -0.43 -16.09 16 16 C 0.08 3.81 5.94 71.24 0.42 4.23 16 17 C 0.44 24.23 7.86 87.66 0.69 24.92 16 18 O -0.61 -37.88 16.08 15.73 0.25 -37.62 16 19 N -0.57 -31.76 5.28 -306.97 -1.62 -33.38 16 20 C -0.41 -24.85 9.68 84.04 0.81 -24.04 16 21 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 22 C -0.04 -2.12 5.50 84.92 0.47 -1.65 16 23 N -0.91 -52.47 13.68 21.66 0.30 -52.17 16 24 Si 1.14 49.47 29.92 68.60 2.05 51.52 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 32 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 33 H 0.13 1.13 7.69 -2.39 -0.02 1.11 16 34 H 0.12 1.20 7.94 -2.39 -0.02 1.18 16 35 H 0.12 0.37 5.93 -2.39 -0.01 0.35 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.41 7.93 -2.39 -0.02 1.39 16 43 H 0.10 4.15 8.13 -2.38 -0.02 4.13 16 44 H 0.09 3.96 8.13 -2.39 -0.02 3.94 16 45 H 0.39 19.88 6.73 -92.71 -0.62 19.26 16 46 H 0.26 14.67 6.78 -92.71 -0.63 14.04 16 Total: -1.00 -89.54 376.21 4.95 -84.59 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.51 Total: 29.77 kcal Atomic # 6 Polarization: 26.75 SS G_CDS: 5.58 Total: 32.33 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -3.70 Total: -100.54 kcal Atomic # 8 Polarization: -98.19 SS G_CDS: 0.51 Total: -97.68 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 2.05 Total: 51.52 kcal Total: -89.54 4.95 -84.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.204 kcal (2) G-P(sol) polarization free energy of solvation -89.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds