Wall clock time and date at job start Fri Apr 10 2020 18:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47061 * 2 1 4 4 C 1.52999 * 109.46949 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47356 * 305.00037 * 4 3 2 6 6 C 1.53000 * 109.46741 * 184.99959 * 4 3 2 7 7 N 1.46494 * 109.47203 * 65.00504 * 4 3 2 8 8 C 1.46765 * 124.35126 * 239.95251 * 7 4 3 9 9 C 1.54480 * 105.47506 * 197.03577 * 8 7 4 10 10 H 1.09003 * 111.00145 * 92.71016 * 9 8 7 11 11 C 1.50703 * 110.96739 * 216.45956 * 9 8 7 12 12 O 1.20826 * 120.00116 * 353.83302 * 11 9 8 13 13 O 1.34236 * 119.99623 * 173.82955 * 11 9 8 14 14 C 1.45196 * 116.99495 * 179.97438 * 13 11 9 15 15 C 1.50703 * 109.46808 * 180.02562 * 14 13 11 16 16 O 1.21292 * 119.99840 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99773 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00039 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99610 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00384 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99833 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00108 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00199 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00192 * 22 20 18 26 26 C 1.54629 * 101.76266 * 334.57939 * 9 8 7 27 27 C 1.34426 * 124.35346 * 59.96933 * 7 4 3 28 28 O 1.21284 * 124.93881 * 359.60703 * 27 7 4 29 29 H 1.08994 * 109.47619 * 299.99904 * 1 2 3 30 30 H 1.09006 * 109.46837 * 60.00618 * 1 2 3 31 31 H 1.09005 * 109.46471 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47399 * 240.00499 * 2 1 3 33 33 H 1.09000 * 109.47410 * 120.00040 * 2 1 3 34 34 H 1.09000 * 109.46607 * 60.00014 * 3 2 1 35 35 H 1.09000 * 109.47041 * 300.00266 * 3 2 1 36 36 H 1.09005 * 109.47132 * 60.00192 * 6 4 3 37 37 H 1.09003 * 109.47164 * 179.97438 * 6 4 3 38 38 H 1.08996 * 109.47708 * 300.00380 * 6 4 3 39 39 H 1.08993 * 110.25042 * 78.02926 * 8 7 4 40 40 H 1.09006 * 110.23881 * 316.03179 * 8 7 4 41 41 H 1.09001 * 109.47156 * 60.00585 * 14 13 11 42 42 H 1.08996 * 109.47616 * 299.99961 * 14 13 11 43 43 H 0.96992 * 120.00503 * 359.97438 * 17 15 14 44 44 H 0.96993 * 119.99996 * 359.97438 * 21 20 18 45 45 H 1.09006 * 110.48171 * 143.47794 * 26 9 8 46 46 H 1.09004 * 110.48620 * 266.11661 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0799 2.8796 0.1264 7 7 4.0588 0.8588 -1.2509 8 6 4.9069 -0.3363 -1.3315 9 6 5.5142 -0.3157 -2.7518 10 1 6.4818 0.1862 -2.7557 11 6 5.6314 -1.7112 -3.3085 12 8 5.3745 -2.6636 -2.6107 13 8 6.0211 -1.8962 -4.5796 14 6 6.1124 -3.2674 -5.0481 15 6 6.5621 -3.2779 -6.4865 16 8 6.7834 -2.2324 -7.0603 17 7 6.7173 -4.4488 -7.1354 18 6 7.1259 -4.4584 -8.4441 19 1 7.3238 -3.5275 -8.9548 20 6 7.2865 -5.6656 -9.1131 21 7 7.0462 -6.7982 -8.4915 22 14 7.8425 -5.6785 -10.8963 23 1 7.9354 -7.0809 -11.3758 24 1 9.1734 -5.0286 -11.0046 25 1 6.8602 -4.9362 -11.7266 26 6 4.4619 0.5051 -3.5327 27 6 3.7886 1.3490 -2.4730 28 8 3.1049 2.3261 -2.6939 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.7161 3.3141 1.0576 37 1 5.1699 2.8796 0.1273 38 1 3.7169 3.4690 -0.7156 39 1 4.3066 -1.2351 -1.1909 40 1 5.6975 -0.2889 -0.5825 41 1 5.1353 -3.7441 -4.9691 42 1 6.8330 -3.8125 -4.4386 43 1 6.5400 -5.2848 -6.6767 44 1 6.7571 -6.7915 -7.5657 45 1 4.9469 1.1397 -4.2745 46 1 3.7390 -0.1568 -4.0096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:38 Heat of formation + Delta-G solvation = -167.126510 kcal Electronic energy + Delta-G solvation = -27813.610664 eV Core-core repulsion = 23703.105780 eV Total energy + Delta-G solvation = -4110.504884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35895 -40.18257 -38.38294 -36.90998 -36.55678 -35.91414 -34.40945 -33.22516 -31.32740 -30.57883 -28.50545 -27.99618 -27.00810 -24.73632 -23.78782 -22.82064 -21.74471 -20.57204 -20.03840 -19.22167 -18.16889 -18.04606 -17.13288 -16.95090 -16.72319 -16.24747 -15.72761 -15.33144 -14.87944 -14.61913 -14.54476 -14.33068 -14.17054 -13.87179 -13.80495 -13.61396 -13.27497 -13.11726 -12.97851 -12.50181 -12.41029 -12.37281 -12.26023 -12.03322 -11.83513 -11.64168 -11.34760 -11.30499 -11.05999 -11.04116 -10.96760 -10.68069 -10.61975 -10.25480 -9.97810 -9.84627 -9.68362 -9.01297 -8.63979 -8.18860 -6.87208 -4.02108 2.00656 2.28068 2.33470 2.72665 3.22307 3.30688 3.50767 3.63665 3.83177 3.96480 4.14714 4.32872 4.39506 4.49230 4.62136 4.66909 4.70844 4.87771 4.91403 4.99102 5.08100 5.10221 5.16378 5.22735 5.31419 5.32040 5.34911 5.46843 5.49700 5.51839 5.54097 5.56944 5.61423 5.72291 5.83284 5.86591 5.91348 6.02530 6.31815 6.37828 6.80364 7.55733 7.68185 7.90549 7.94725 8.42977 8.62157 9.30134 9.65657 10.55607 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.024439 B = 0.002149 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.420445 B =13023.810633 C =13305.379949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.137 4.137 4 C 0.157 3.843 5 H 0.089 0.911 6 C -0.168 4.168 7 N -0.615 5.615 8 C 0.116 3.884 9 C -0.095 4.095 10 H 0.132 0.868 11 C 0.471 3.529 12 O -0.507 6.507 13 O -0.319 6.319 14 C 0.060 3.940 15 C 0.439 3.561 16 O -0.568 6.568 17 N -0.564 5.564 18 C -0.385 4.385 19 H 0.102 0.898 20 C -0.006 4.006 21 N -0.894 5.894 22 Si 1.093 2.907 23 H -0.278 1.278 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.145 4.145 27 C 0.524 3.476 28 O -0.522 6.522 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.378 0.622 44 H 0.262 0.738 45 H 0.120 0.880 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 12.555 20.244 24.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.175 4.175 4 C 0.055 3.945 5 H 0.107 0.893 6 C -0.226 4.226 7 N -0.350 5.350 8 C -0.007 4.007 9 C -0.114 4.114 10 H 0.150 0.850 11 C 0.313 3.687 12 O -0.396 6.396 13 O -0.232 6.232 14 C -0.017 4.017 15 C 0.224 3.776 16 O -0.452 6.452 17 N -0.203 5.203 18 C -0.513 4.513 19 H 0.120 0.880 20 C -0.209 4.209 21 N -0.533 5.533 22 Si 0.918 3.082 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.185 4.185 27 C 0.312 3.688 28 O -0.398 6.398 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.212 0.788 44 H 0.074 0.926 45 H 0.138 0.862 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.862 12.503 18.684 23.505 hybrid contribution -0.375 0.164 1.754 1.802 sum -7.237 12.667 20.439 25.111 Atomic orbital electron populations 1.21753 0.95767 1.01628 1.01748 1.21498 0.96021 0.96525 1.01950 1.22063 0.94155 0.97662 1.03658 1.21025 0.94197 0.94547 0.84722 0.89296 1.22184 1.01349 0.95967 1.03120 1.48423 1.51371 1.28736 1.06447 1.22028 0.94778 0.88843 0.95048 1.21843 1.02735 0.91347 0.95488 0.85012 1.23074 0.73438 0.91473 0.80683 1.90676 1.46139 1.43103 1.59662 1.86553 1.77442 1.31476 1.27777 1.22781 1.02969 0.79926 0.96046 1.19202 0.86334 0.85258 0.86787 1.90577 1.55247 1.31285 1.68058 1.41774 1.59937 1.05885 1.12677 1.20565 1.46139 0.97605 0.87015 0.87969 1.26606 0.96306 0.90522 1.07478 1.70907 1.42519 1.27129 1.12710 0.83112 0.76702 0.76341 0.72024 1.20299 1.20835 1.20829 1.22366 0.98378 0.99548 0.98183 1.20690 0.80131 0.84068 0.83956 1.90709 1.39162 1.26338 1.83614 0.92839 0.92729 0.92756 0.92066 0.92176 0.90860 0.90079 0.91429 0.92343 0.90883 0.89036 0.89236 0.89460 0.89423 0.78847 0.92628 0.86199 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.79 16 2 C -0.12 -0.97 5.82 -26.73 -0.16 -1.13 16 3 C -0.14 -1.09 4.64 -26.73 -0.12 -1.22 16 4 C 0.16 1.17 2.87 -67.93 -0.19 0.98 16 5 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 6 C -0.17 -1.24 9.20 37.16 0.34 -0.90 16 7 N -0.61 -5.43 2.28 -164.85 -0.38 -5.80 16 8 C 0.12 0.93 6.62 -3.12 -0.02 0.91 16 9 C -0.09 -0.89 3.66 -90.14 -0.33 -1.22 16 10 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 11 C 0.47 6.25 7.18 36.01 0.26 6.50 16 12 O -0.51 -7.45 15.32 -18.75 -0.29 -7.74 16 13 O -0.32 -5.32 9.74 -45.92 -0.45 -5.77 16 14 C 0.06 1.06 5.94 36.01 0.21 1.28 16 15 C 0.44 10.21 7.86 -10.98 -0.09 10.12 16 16 O -0.57 -15.44 16.08 -14.11 -0.23 -15.66 16 17 N -0.56 -13.78 5.28 -10.96 -0.06 -13.84 16 18 C -0.38 -10.51 9.68 -14.93 -0.14 -10.65 16 19 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 20 C -0.01 -0.16 5.50 -17.47 -0.10 -0.25 16 21 N -0.89 -24.36 13.68 55.50 0.76 -23.60 16 22 Si 1.09 23.53 29.92 -169.99 -5.09 18.44 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 C -0.14 -1.48 6.40 -26.75 -0.17 -1.65 16 27 C 0.52 5.89 7.39 -10.86 -0.08 5.81 16 28 O -0.52 -7.50 15.07 5.55 0.08 -7.42 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.58 7.75 -51.93 -0.40 0.17 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.86 6.63 -51.93 -0.34 0.51 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.72 6.80 -51.93 -0.35 0.37 16 39 H 0.09 0.82 7.06 -51.93 -0.37 0.45 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 42 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 43 H 0.38 8.42 6.73 -40.82 -0.27 8.14 16 44 H 0.26 6.84 6.77 -40.82 -0.28 6.56 16 45 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.11 1.19 7.89 -51.93 -0.41 0.78 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -34.14 383.91 -7.16 -41.30 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.09 Total: 6.50 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -0.22 Total: 7.80 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.32 Total: -43.25 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.88 Total: -36.58 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.09 Total: 18.44 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.14 -7.16 -41.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.822 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds