Wall clock time and date at job start Fri Apr 10 2020 18:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47061 * 2 1 4 4 C 1.52999 * 109.46949 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47356 * 305.00037 * 4 3 2 6 6 C 1.53000 * 109.46741 * 184.99959 * 4 3 2 7 7 N 1.46494 * 109.47203 * 65.00504 * 4 3 2 8 8 C 1.46765 * 124.35126 * 239.95251 * 7 4 3 9 9 C 1.54480 * 105.47506 * 197.03577 * 8 7 4 10 10 H 1.09003 * 111.00145 * 92.71016 * 9 8 7 11 11 C 1.50703 * 110.96739 * 216.45956 * 9 8 7 12 12 O 1.20826 * 120.00116 * 353.83302 * 11 9 8 13 13 O 1.34236 * 119.99623 * 173.82955 * 11 9 8 14 14 C 1.45196 * 116.99495 * 179.97438 * 13 11 9 15 15 C 1.50703 * 109.46808 * 180.02562 * 14 13 11 16 16 O 1.21292 * 119.99840 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99773 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00039 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99610 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00384 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99833 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00108 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00199 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00192 * 22 20 18 26 26 C 1.54629 * 101.76266 * 334.57939 * 9 8 7 27 27 C 1.34426 * 124.35346 * 59.96933 * 7 4 3 28 28 O 1.21284 * 124.93881 * 359.60703 * 27 7 4 29 29 H 1.08994 * 109.47619 * 299.99904 * 1 2 3 30 30 H 1.09006 * 109.46837 * 60.00618 * 1 2 3 31 31 H 1.09005 * 109.46471 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47399 * 240.00499 * 2 1 3 33 33 H 1.09000 * 109.47410 * 120.00040 * 2 1 3 34 34 H 1.09000 * 109.46607 * 60.00014 * 3 2 1 35 35 H 1.09000 * 109.47041 * 300.00266 * 3 2 1 36 36 H 1.09005 * 109.47132 * 60.00192 * 6 4 3 37 37 H 1.09003 * 109.47164 * 179.97438 * 6 4 3 38 38 H 1.08996 * 109.47708 * 300.00380 * 6 4 3 39 39 H 1.08993 * 110.25042 * 78.02926 * 8 7 4 40 40 H 1.09006 * 110.23881 * 316.03179 * 8 7 4 41 41 H 1.09001 * 109.47156 * 60.00585 * 14 13 11 42 42 H 1.08996 * 109.47616 * 299.99961 * 14 13 11 43 43 H 0.96992 * 120.00503 * 359.97438 * 17 15 14 44 44 H 0.96993 * 119.99996 * 359.97438 * 21 20 18 45 45 H 1.09006 * 110.48171 * 143.47794 * 26 9 8 46 46 H 1.09004 * 110.48620 * 266.11661 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0799 2.8796 0.1264 7 7 4.0588 0.8588 -1.2509 8 6 4.9069 -0.3363 -1.3315 9 6 5.5142 -0.3157 -2.7518 10 1 6.4818 0.1862 -2.7557 11 6 5.6314 -1.7112 -3.3085 12 8 5.3745 -2.6636 -2.6107 13 8 6.0211 -1.8962 -4.5796 14 6 6.1124 -3.2674 -5.0481 15 6 6.5621 -3.2779 -6.4865 16 8 6.7834 -2.2324 -7.0603 17 7 6.7173 -4.4488 -7.1354 18 6 7.1259 -4.4584 -8.4441 19 1 7.3238 -3.5275 -8.9548 20 6 7.2865 -5.6656 -9.1131 21 7 7.0462 -6.7982 -8.4915 22 14 7.8425 -5.6785 -10.8963 23 1 7.9354 -7.0809 -11.3758 24 1 9.1734 -5.0286 -11.0046 25 1 6.8602 -4.9362 -11.7266 26 6 4.4619 0.5051 -3.5327 27 6 3.7886 1.3490 -2.4730 28 8 3.1049 2.3261 -2.6939 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.7161 3.3141 1.0576 37 1 5.1699 2.8796 0.1273 38 1 3.7169 3.4690 -0.7156 39 1 4.3066 -1.2351 -1.1909 40 1 5.6975 -0.2889 -0.5825 41 1 5.1353 -3.7441 -4.9691 42 1 6.8330 -3.8125 -4.4386 43 1 6.5400 -5.2848 -6.6767 44 1 6.7571 -6.7915 -7.5657 45 1 4.9469 1.1397 -4.2745 46 1 3.7390 -0.1568 -4.0096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:37 Heat of formation + Delta-G solvation = -187.820545 kcal Electronic energy + Delta-G solvation = -27814.508025 eV Core-core repulsion = 23703.105780 eV Total energy + Delta-G solvation = -4111.402244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.29702 -41.26314 -40.18398 -37.91994 -37.56830 -36.78380 -36.41035 -33.90248 -33.30941 -31.37938 -29.92883 -28.86044 -27.61597 -26.50133 -24.91006 -23.51691 -22.41704 -21.90794 -21.51149 -20.11262 -20.01469 -19.12854 -18.43611 -18.02581 -17.85036 -17.40031 -16.82339 -16.66277 -16.13718 -15.85329 -15.70060 -15.48264 -15.12460 -14.93543 -14.89584 -14.62864 -14.52203 -13.90404 -13.85992 -13.74093 -13.55733 -13.39954 -13.05646 -12.92557 -12.83687 -12.75269 -12.53984 -12.49255 -11.96398 -11.94765 -11.93528 -11.90653 -11.73201 -11.65088 -11.60683 -11.59213 -10.72218 -10.57606 -10.20230 -9.75178 -8.97867 -6.14102 0.94505 1.18571 1.46133 1.46434 1.56740 1.84208 1.86630 1.93982 2.41061 2.82128 3.08125 3.10517 3.22961 3.55938 3.63704 3.78265 3.85105 4.00863 4.01909 4.06437 4.06935 4.09771 4.30812 4.36365 4.47689 4.50237 4.56991 4.69883 4.72304 4.77375 4.79934 4.90815 4.95682 4.99052 5.20573 5.21043 5.24357 5.30299 5.39287 5.55488 5.65344 5.88997 6.03743 6.40857 6.51339 6.62702 7.07235 7.30768 7.74440 8.49231 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.024439 B = 0.002149 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.420445 B =13023.810633 C =13305.379949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.133 4.133 4 C 0.151 3.849 5 H 0.119 0.881 6 C -0.163 4.163 7 N -0.606 5.606 8 C 0.120 3.880 9 C -0.084 4.084 10 H 0.158 0.842 11 C 0.476 3.524 12 O -0.518 6.518 13 O -0.339 6.339 14 C 0.072 3.928 15 C 0.440 3.560 16 O -0.612 6.612 17 N -0.573 5.573 18 C -0.412 4.412 19 H 0.078 0.922 20 C -0.037 4.037 21 N -0.911 5.911 22 Si 1.134 2.866 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.145 4.145 27 C 0.520 3.480 28 O -0.561 6.561 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.388 0.612 44 H 0.261 0.739 45 H 0.120 0.880 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 12.324 22.356 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.171 4.171 4 C 0.050 3.950 5 H 0.137 0.863 6 C -0.221 4.221 7 N -0.339 5.339 8 C -0.002 4.002 9 C -0.104 4.104 10 H 0.176 0.824 11 C 0.319 3.681 12 O -0.407 6.407 13 O -0.254 6.254 14 C -0.006 4.006 15 C 0.227 3.773 16 O -0.497 6.497 17 N -0.212 5.212 18 C -0.541 4.541 19 H 0.096 0.904 20 C -0.236 4.236 21 N -0.549 5.549 22 Si 0.953 3.047 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.186 4.186 27 C 0.308 3.692 28 O -0.440 6.440 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.140 0.860 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.223 0.777 44 H 0.072 0.928 45 H 0.139 0.861 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.341 12.244 20.860 25.005 hybrid contribution -0.593 0.281 1.203 1.370 sum -6.934 12.525 22.063 26.301 Atomic orbital electron populations 1.21758 0.95771 1.01745 1.01665 1.21480 0.96076 0.96390 1.01788 1.22016 0.94684 0.97488 1.02952 1.21267 0.93819 0.95098 0.84784 0.86295 1.22137 1.01690 0.95483 1.02794 1.48496 1.50681 1.28491 1.06253 1.22137 0.95280 0.88074 0.94746 1.21947 1.03822 0.88796 0.95790 0.82402 1.23666 0.72388 0.92760 0.79293 1.90673 1.46570 1.43904 1.59544 1.86558 1.78302 1.30689 1.29839 1.22528 1.04466 0.81285 0.92274 1.20151 0.84286 0.84068 0.88813 1.90546 1.56642 1.32740 1.69819 1.41798 1.60320 1.06897 1.12207 1.20557 1.47826 0.97098 0.88601 0.90357 1.27891 0.95421 0.89782 1.10540 1.70972 1.43378 1.27540 1.13018 0.82627 0.77126 0.76743 0.68168 1.19744 1.19574 1.19724 1.22340 0.98512 0.99460 0.98254 1.20808 0.79783 0.83664 0.84923 1.90692 1.40918 1.28084 1.84272 0.91585 0.94169 0.92537 0.93938 0.90445 0.89089 0.93249 0.89515 0.91669 0.93882 0.89575 0.85972 0.87370 0.86984 0.77679 0.92769 0.86140 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 71.98 0.71 -1.48 16 2 C -0.12 -1.73 5.82 30.60 0.18 -1.55 16 3 C -0.13 -1.96 4.64 30.60 0.14 -1.81 16 4 C 0.15 1.92 2.87 44.99 0.13 2.04 16 5 H 0.12 0.86 8.07 -2.39 -0.02 0.84 16 6 C -0.16 -2.11 9.20 71.98 0.66 -1.45 16 7 N -0.61 -9.63 2.28 -794.05 -1.81 -11.44 16 8 C 0.12 1.57 6.62 86.83 0.57 2.14 16 9 C -0.08 -1.40 3.66 -10.48 -0.04 -1.44 16 10 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 11 C 0.48 11.67 7.18 71.24 0.51 12.18 16 12 O -0.52 -13.98 15.32 21.96 0.34 -13.65 16 13 O -0.34 -10.89 9.74 -45.12 -0.44 -11.33 16 14 C 0.07 2.42 5.94 71.24 0.42 2.85 16 15 C 0.44 20.48 7.86 87.66 0.69 21.17 16 16 O -0.61 -33.80 16.08 15.73 0.25 -33.55 16 17 N -0.57 -28.19 5.28 -306.98 -1.62 -29.81 16 18 C -0.41 -22.86 9.68 84.04 0.81 -22.04 16 19 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 20 C -0.04 -1.96 5.50 84.93 0.47 -1.49 16 21 N -0.91 -49.33 13.68 21.66 0.30 -49.04 16 22 Si 1.13 46.95 29.92 68.60 2.05 49.00 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 26 C -0.15 -2.91 6.40 30.58 0.20 -2.72 16 27 C 0.52 11.58 7.39 87.89 0.65 12.23 16 28 O -0.56 -16.68 15.07 -3.04 -0.05 -16.72 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.04 0.77 7.75 -2.39 -0.02 0.75 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 1.07 6.63 -2.39 -0.02 1.05 16 36 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.04 0.84 6.80 -2.39 -0.02 0.82 16 39 H 0.09 1.30 7.06 -2.39 -0.02 1.28 16 40 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.11 3.23 8.13 -2.39 -0.02 3.21 16 42 H 0.11 3.27 8.13 -2.39 -0.02 3.25 16 43 H 0.39 17.28 6.73 -92.71 -0.62 16.66 16 44 H 0.26 13.61 6.77 -92.71 -0.63 12.98 16 45 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 46 H 0.10 2.22 7.89 -2.39 -0.02 2.21 16 Total: -1.00 -75.50 383.91 5.64 -69.86 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.51 Total: 28.04 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 6.11 Total: 18.63 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -3.14 Total: -90.29 kcal Atomic # 8 Polarization: -75.35 SS G_CDS: 0.10 Total: -75.24 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.05 Total: 49.00 kcal Total: -75.50 5.64 -69.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.959 kcal (2) G-P(sol) polarization free energy of solvation -75.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds