Wall clock time and date at job start Fri Apr 10 2020 18:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46811 * 2 1 4 4 C 1.53001 * 109.46657 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47241 * 304.99760 * 4 3 2 6 6 C 1.53002 * 109.46737 * 184.99912 * 4 3 2 7 7 N 1.46493 * 109.47565 * 65.00134 * 4 3 2 8 8 C 1.46762 * 124.35381 * 240.00128 * 7 4 3 9 9 C 1.54476 * 105.47564 * 163.00306 * 8 7 4 10 10 H 1.09001 * 110.96741 * 267.25787 * 9 8 7 11 11 C 1.50706 * 110.96881 * 143.53607 * 9 8 7 12 12 O 1.20824 * 120.00104 * 359.97438 * 11 9 8 13 13 O 1.34230 * 119.99717 * 180.02562 * 11 9 8 14 14 C 1.45199 * 116.99614 * 179.97438 * 13 11 9 15 15 C 1.50703 * 109.46928 * 179.97438 * 14 13 11 16 16 O 1.21286 * 120.00016 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00108 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00333 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99712 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00268 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99577 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47125 * 60.00705 * 22 20 18 24 24 H 1.48508 * 109.46668 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47356 * 299.99860 * 22 20 18 26 26 C 1.54625 * 101.76580 * 25.41243 * 9 8 7 27 27 C 1.34425 * 124.34704 * 60.01900 * 7 4 3 28 28 O 1.21280 * 124.94664 * 0.39109 * 27 7 4 29 29 H 1.08995 * 109.47636 * 59.99582 * 1 2 3 30 30 H 1.09005 * 109.47415 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47122 * 299.99679 * 1 2 3 32 32 H 1.08995 * 109.47018 * 240.00308 * 2 1 3 33 33 H 1.08997 * 109.47303 * 120.00010 * 2 1 3 34 34 H 1.08995 * 109.47078 * 60.00345 * 3 2 1 35 35 H 1.08997 * 109.47196 * 300.00076 * 3 2 1 36 36 H 1.09007 * 109.47140 * 60.00595 * 6 4 3 37 37 H 1.08999 * 109.47080 * 179.97438 * 6 4 3 38 38 H 1.08993 * 109.47343 * 300.00303 * 6 4 3 39 39 H 1.09000 * 110.24272 * 44.00013 * 8 7 4 40 40 H 1.09001 * 110.31525 * 282.04411 * 8 7 4 41 41 H 1.09002 * 109.47177 * 299.99820 * 14 13 11 42 42 H 1.09001 * 109.47399 * 59.99991 * 14 13 11 43 43 H 0.97005 * 119.99463 * 359.97438 * 17 15 14 44 44 H 0.96996 * 119.99832 * 179.97438 * 21 20 18 45 45 H 1.09004 * 110.48524 * 93.88530 * 26 9 8 46 46 H 1.09005 * 110.48605 * 216.52102 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0799 2.8796 0.1251 7 7 4.0578 0.8590 -1.2527 8 6 4.9050 -0.3366 -1.3344 9 6 4.8001 -0.8167 -2.7989 10 1 4.0072 -1.5562 -2.9111 11 6 6.1179 -1.3655 -3.2821 12 8 7.0730 -1.3827 -2.5423 13 8 6.2308 -1.8341 -4.5349 14 6 7.5298 -2.3469 -4.9322 15 6 7.4656 -2.8260 -6.3596 16 8 6.4271 -2.7438 -6.9807 17 7 8.5618 -3.3467 -6.9457 18 6 8.5035 -3.7820 -8.2444 19 1 7.5790 -3.7081 -8.7977 20 6 9.6340 -4.3184 -8.8487 21 7 10.7588 -4.4088 -8.1753 22 14 9.5542 -4.9122 -10.6181 23 1 9.1768 -3.7812 -11.5033 24 1 10.8830 -5.4361 -11.0247 25 1 8.5401 -5.9907 -10.7331 26 6 4.4430 0.4948 -3.5359 27 6 3.7873 1.3502 -2.4744 28 8 3.1153 2.3357 -2.6938 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 3.7170 3.3137 1.0568 37 1 5.1699 2.8796 0.1251 38 1 3.7162 3.4691 -0.7164 39 1 4.5361 -1.1071 -0.6574 40 1 5.9378 -0.0858 -1.0926 41 1 8.2744 -1.5553 -4.8474 42 1 7.8068 -3.1773 -4.2828 43 1 9.3923 -3.4127 -6.4488 44 1 11.5477 -4.7836 -8.5971 45 1 5.3444 0.9784 -3.9125 46 1 3.7464 0.2970 -4.3506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:41 Heat of formation + Delta-G solvation = -168.112643 kcal Electronic energy + Delta-G solvation = -27707.898817 eV Core-core repulsion = 23597.351172 eV Total energy + Delta-G solvation = -4110.547645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31835 -40.11978 -38.22470 -36.88601 -36.48962 -35.83603 -34.04315 -33.23760 -31.42656 -30.53476 -28.51621 -27.96799 -27.00413 -24.93206 -23.79005 -22.79990 -21.74629 -20.48564 -19.64246 -19.19330 -18.13254 -18.04942 -17.10125 -16.76615 -16.45448 -16.04340 -15.68915 -15.21280 -15.04816 -14.54930 -14.38861 -14.23462 -14.08766 -13.98172 -13.92328 -13.52053 -13.15996 -13.02776 -12.95525 -12.40128 -12.39074 -12.27278 -12.14408 -12.01873 -11.78952 -11.64627 -11.57243 -11.28720 -11.13934 -11.04782 -10.99461 -10.62246 -10.52819 -10.51244 -10.32014 -9.82032 -9.62865 -8.97945 -8.57155 -8.11908 -6.53104 -3.95305 2.06614 2.34888 2.36236 2.76933 3.13353 3.21181 3.25654 3.69400 3.88128 4.00041 4.09681 4.35052 4.44772 4.52873 4.63675 4.67372 4.77422 4.89270 4.99209 5.01959 5.11087 5.12041 5.16376 5.27287 5.32281 5.36599 5.44593 5.48836 5.52652 5.55654 5.60067 5.60768 5.62474 5.82040 5.86876 5.93342 5.99729 6.01025 6.34403 6.47703 6.83204 7.44711 7.66281 7.90648 7.93210 8.44540 9.03695 9.35356 9.85022 10.63905 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.027362 B = 0.002074 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.077153 B =13494.675723 C =13706.166791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.137 4.137 4 C 0.157 3.843 5 H 0.089 0.911 6 C -0.169 4.169 7 N -0.614 5.614 8 C 0.115 3.885 9 C -0.095 4.095 10 H 0.130 0.870 11 C 0.471 3.529 12 O -0.507 6.507 13 O -0.319 6.319 14 C 0.060 3.940 15 C 0.437 3.563 16 O -0.575 6.575 17 N -0.551 5.551 18 C -0.303 4.303 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.897 5.897 22 Si 0.935 3.065 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 C -0.144 4.144 27 C 0.524 3.476 28 O -0.523 6.523 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.395 0.605 44 H 0.275 0.725 45 H 0.111 0.889 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.390 8.718 19.412 24.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.175 4.175 4 C 0.055 3.945 5 H 0.107 0.893 6 C -0.227 4.227 7 N -0.349 5.349 8 C -0.008 4.008 9 C -0.114 4.114 10 H 0.148 0.852 11 C 0.313 3.687 12 O -0.396 6.396 13 O -0.233 6.233 14 C -0.017 4.017 15 C 0.221 3.779 16 O -0.460 6.460 17 N -0.189 5.189 18 C -0.432 4.432 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.537 5.537 22 Si 0.761 3.239 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.197 1.197 26 C -0.184 4.184 27 C 0.312 3.688 28 O -0.399 6.399 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.228 0.772 44 H 0.085 0.915 45 H 0.129 0.871 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.968 9.231 19.080 24.848 hybrid contribution 0.897 -0.569 -0.455 1.156 sum -12.071 8.662 18.625 23.825 Atomic orbital electron populations 1.21755 0.95777 1.01595 1.01788 1.21496 0.96001 0.96579 1.01885 1.22063 0.94176 0.97639 1.03662 1.21019 0.94081 0.94643 0.84735 0.89298 1.22185 1.01453 0.95979 1.03077 1.48413 1.51138 1.28950 1.06412 1.22044 0.96856 0.87390 0.94547 1.21827 0.94815 0.98981 0.95815 0.85174 1.23037 0.90052 0.75018 0.80586 1.90672 1.39929 1.52842 1.56171 1.86549 1.36334 1.70839 1.29562 1.22808 0.82095 0.99804 0.97015 1.19292 0.85783 0.85722 0.87074 1.90568 1.30180 1.60243 1.64964 1.41699 1.10411 1.53475 1.13284 1.19675 0.98551 1.37384 0.87634 0.87633 1.25321 0.94676 0.97179 1.00555 1.69601 1.01210 1.44918 1.37980 0.85851 0.77374 0.79236 0.81396 1.19725 1.20866 1.19728 1.22357 1.04061 0.93389 0.98612 1.20680 0.79652 0.84479 0.83993 1.90707 1.39306 1.26182 1.83716 0.92690 0.92772 0.92877 0.91997 0.92220 0.90876 0.90091 0.91447 0.92314 0.90879 0.89314 0.88855 0.89406 0.89372 0.77153 0.91539 0.87093 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.85 5.82 -26.73 -0.16 -1.01 16 3 C -0.14 -1.04 4.64 -26.73 -0.12 -1.16 16 4 C 0.16 1.19 2.86 -67.93 -0.19 0.99 16 5 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 6 C -0.17 -1.33 9.20 37.16 0.34 -0.99 16 7 N -0.61 -5.46 2.28 -164.85 -0.38 -5.84 16 8 C 0.11 0.93 6.66 -3.12 -0.02 0.91 16 9 C -0.09 -0.90 3.66 -90.14 -0.33 -1.23 16 10 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 11 C 0.47 6.31 7.19 36.01 0.26 6.57 16 12 O -0.51 -7.56 15.25 -18.75 -0.29 -7.84 16 13 O -0.32 -5.36 9.76 -45.90 -0.45 -5.81 16 14 C 0.06 1.07 5.94 36.01 0.21 1.28 16 15 C 0.44 10.14 7.86 -10.98 -0.09 10.06 16 16 O -0.58 -15.52 16.08 -14.11 -0.23 -15.75 16 17 N -0.55 -13.57 5.29 -10.97 -0.06 -13.63 16 18 C -0.30 -8.21 9.68 -14.94 -0.14 -8.36 16 19 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -23.65 13.05 55.50 0.72 -22.92 16 22 Si 0.93 20.42 29.55 -169.99 -5.02 15.39 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 C -0.14 -1.47 6.41 -26.74 -0.17 -1.64 16 27 C 0.52 5.91 7.39 -10.86 -0.08 5.83 16 28 O -0.52 -7.51 15.07 5.56 0.08 -7.43 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.49 7.75 -51.93 -0.40 0.08 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.82 6.65 -51.93 -0.35 0.48 16 36 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.75 6.77 -51.93 -0.35 0.40 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.85 6.96 -51.93 -0.36 0.48 16 41 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 42 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 43 H 0.39 9.19 7.90 -40.82 -0.32 8.86 16 44 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.11 1.17 7.89 -51.93 -0.41 0.76 16 46 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -32.76 385.52 -7.22 -39.98 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.19 Total: 6.89 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -0.22 Total: 11.14 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.29 Total: -42.40 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -0.88 Total: -36.82 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.76 -7.22 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.134 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds