Wall clock time and date at job start Fri Apr 10 2020 18:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 C 1.50699 * 109.46823 * 119.99995 * 2 1 3 5 5 O 1.21286 * 119.99772 * 264.15189 * 4 2 1 6 6 N 1.34775 * 120.00112 * 84.16336 * 4 2 1 7 7 C 1.46922 * 120.63080 * 5.71147 * 6 4 2 8 8 C 1.53197 * 108.77496 * 233.63353 * 7 6 4 9 9 C 1.53039 * 109.31212 * 305.36483 * 8 7 6 10 10 C 1.53043 * 109.53910 * 61.36649 * 9 8 7 11 11 C 1.46929 * 120.62952 * 185.73935 * 6 4 2 12 12 H 1.08998 * 109.70302 * 246.22568 * 11 6 4 13 13 C 1.50708 * 109.58674 * 6.57806 * 11 6 4 14 14 O 1.20823 * 120.00086 * 61.25179 * 13 11 6 15 15 O 1.34228 * 119.99737 * 241.25564 * 13 11 6 16 16 C 1.45202 * 116.99851 * 179.97438 * 15 13 11 17 17 C 1.50695 * 109.47245 * 180.02562 * 16 15 13 18 18 O 1.21291 * 119.99784 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00170 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00330 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99813 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99877 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00578 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99648 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47189 * 180.02562 * 24 22 20 26 26 H 1.48496 * 109.47393 * 300.00402 * 24 22 20 27 27 H 1.48506 * 109.46728 * 60.00631 * 24 22 20 28 28 H 1.09002 * 109.46997 * 54.83353 * 1 2 3 29 29 H 1.09000 * 109.47314 * 174.82947 * 1 2 3 30 30 H 1.08995 * 109.47169 * 294.83185 * 1 2 3 31 31 H 1.09005 * 109.46956 * 239.99731 * 2 1 3 32 32 H 1.09006 * 109.46856 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46798 * 299.99406 * 3 2 1 34 34 H 1.08994 * 109.47302 * 59.99532 * 3 2 1 35 35 H 1.09006 * 109.58332 * 113.85215 * 7 6 4 36 36 H 1.08995 * 109.58772 * 353.41869 * 7 6 4 37 37 H 1.08999 * 109.49853 * 185.41500 * 8 7 6 38 38 H 1.08997 * 109.52114 * 65.33182 * 8 7 6 39 39 H 1.09000 * 109.46647 * 301.34539 * 9 8 7 40 40 H 1.09007 * 109.45981 * 181.38236 * 9 8 7 41 41 H 1.08999 * 109.50108 * 178.68219 * 10 9 8 42 42 H 1.09004 * 109.49733 * 58.58202 * 10 9 8 43 43 H 1.08997 * 109.46862 * 59.99680 * 16 15 13 44 44 H 1.09005 * 109.46837 * 300.00279 * 16 15 13 45 45 H 0.97005 * 119.99967 * 359.97438 * 19 17 16 46 46 H 0.97003 * 119.99563 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3353 -0.0735 2.2172 6 7 2.1450 -2.0534 1.2344 7 6 1.9022 -2.8286 0.0102 8 6 0.8593 -3.9100 0.3100 9 6 1.3273 -4.7479 1.5020 10 6 1.4627 -3.8522 2.7356 11 6 2.5124 -2.7702 2.4633 12 1 3.4912 -3.2336 2.3397 13 6 2.5532 -1.8037 3.6189 14 8 1.5543 -1.2055 3.9417 15 8 3.6993 -1.6075 4.2894 16 6 3.6650 -0.6618 5.3908 17 6 5.0319 -0.5725 6.0189 18 8 5.9450 -1.2405 5.5817 19 7 5.2397 0.2496 7.0665 20 6 6.4832 0.3306 7.6383 21 1 7.2962 -0.2642 7.2490 22 6 6.6975 1.1786 8.7179 23 7 5.7083 1.9027 9.1913 24 14 8.3919 1.2893 9.4966 25 1 8.3569 2.2569 10.6225 26 1 8.7911 -0.0474 10.0054 27 1 9.3743 1.7462 8.4810 28 1 -0.3633 0.5919 -0.8401 29 1 -0.3634 -1.0235 -0.0926 30 1 -0.3633 0.4316 0.9326 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 2.8309 -3.2971 -0.3159 36 1 1.5291 -2.1682 -0.7725 37 1 0.7406 -4.5528 -0.5623 38 1 -0.0949 -3.4398 0.5480 39 1 2.2930 -5.1983 1.2726 40 1 0.5987 -5.5336 1.7020 41 1 1.7734 -4.4538 3.5897 42 1 0.5031 -3.3821 2.9509 43 1 2.9436 -0.9977 6.1356 44 1 3.3720 0.3197 5.0179 45 1 4.5095 0.7842 7.4159 46 1 4.8285 1.8454 8.7867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:45 Heat of formation + Delta-G solvation = -157.133241 kcal Electronic energy + Delta-G solvation = -29071.598433 eV Core-core repulsion = 24961.526891 eV Total energy + Delta-G solvation = -4110.071543 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31393 -39.48323 -38.14493 -37.75625 -35.88368 -34.76018 -34.24714 -33.13681 -31.84543 -31.14593 -28.33333 -27.44288 -26.40799 -24.53301 -24.15593 -23.46173 -21.18736 -20.74345 -19.81194 -18.85316 -18.06184 -17.90933 -17.13102 -16.71711 -16.23494 -15.82622 -15.49776 -15.31744 -14.99967 -14.65122 -14.47069 -14.34877 -14.01639 -13.78939 -13.69134 -13.52871 -13.20766 -12.89496 -12.81648 -12.48368 -12.25882 -12.15532 -12.00328 -11.72592 -11.56311 -11.43705 -11.36238 -11.24267 -11.21615 -11.00004 -10.95224 -10.22536 -10.18768 -10.04143 -9.86358 -9.63166 -9.55834 -8.97428 -8.45821 -8.05685 -6.75632 -3.89341 2.15940 2.44093 2.80563 3.00521 3.31830 3.36608 3.57400 3.79908 4.12771 4.27300 4.28571 4.41457 4.48205 4.54891 4.58769 4.70133 4.73018 4.84076 4.93721 5.06282 5.15095 5.21766 5.24334 5.31493 5.34098 5.39569 5.43298 5.45635 5.58531 5.59760 5.62676 5.64694 5.67090 5.81660 5.87061 5.93317 5.94004 6.03650 6.13172 6.86371 7.04665 7.76696 7.93502 8.06778 8.19249 8.57623 8.76654 9.44299 9.82046 10.67595 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.002853 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.934018 B = 9811.306794 C =10632.714791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C -0.137 4.137 4 C 0.512 3.488 5 O -0.502 6.502 6 N -0.607 5.607 7 C 0.108 3.892 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.125 4.125 11 C 0.156 3.844 12 H 0.104 0.896 13 C 0.476 3.524 14 O -0.501 6.501 15 O -0.326 6.326 16 C 0.069 3.931 17 C 0.444 3.556 18 O -0.571 6.571 19 N -0.567 5.567 20 C -0.383 4.383 21 H 0.101 0.899 22 C -0.008 4.008 23 N -0.897 5.897 24 Si 1.094 2.906 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.378 0.622 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.714 -10.144 -22.236 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.195 4.195 4 C 0.300 3.700 5 O -0.376 6.376 6 N -0.345 5.345 7 C -0.015 4.015 8 C -0.176 4.176 9 C -0.154 4.154 10 C -0.163 4.163 11 C 0.051 3.949 12 H 0.122 0.878 13 C 0.318 3.682 14 O -0.389 6.389 15 O -0.241 6.241 16 C -0.009 4.009 17 C 0.230 3.770 18 O -0.454 6.454 19 N -0.206 5.206 20 C -0.512 4.512 21 H 0.119 0.881 22 C -0.211 4.211 23 N -0.536 5.536 24 Si 0.919 3.081 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.211 0.789 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.310 -9.279 -20.633 25.755 hybrid contribution -1.489 -0.424 -1.029 1.859 sum -13.799 -9.702 -21.662 27.455 Atomic orbital electron populations 1.21745 0.92383 1.02431 1.03266 1.21288 0.97940 0.97946 0.95767 1.21681 1.01605 0.93493 1.02699 1.20907 0.77376 0.81459 0.90244 1.90780 1.47756 1.64522 1.34519 1.48069 1.70800 1.05852 1.09756 1.21888 0.99523 0.94140 0.85904 1.21972 0.99069 0.97488 0.99082 1.21506 1.02346 0.97639 0.93951 1.21896 0.99169 0.95867 0.99351 1.20659 1.00922 0.90890 0.82386 0.87776 1.22621 0.81940 0.80776 0.82837 1.90613 1.36183 1.45578 1.66513 1.86458 1.35385 1.58630 1.43627 1.22590 0.98093 0.92836 0.87346 1.19315 0.88772 0.85098 0.83838 1.90544 1.44248 1.46610 1.64022 1.41767 1.12171 1.38296 1.28395 1.20556 0.87998 1.27344 1.15311 0.88102 1.26577 1.06745 0.93064 0.94671 1.70890 1.02029 1.39062 1.41645 0.83110 0.72035 0.76751 0.76194 1.20344 1.20922 1.20918 0.91250 0.92206 0.91650 0.88952 0.92176 0.91817 0.91234 0.90658 0.88872 0.90191 0.91113 0.91097 0.90767 0.89729 0.90087 0.90124 0.89504 0.78870 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.09 37.16 0.34 -0.76 16 2 C -0.11 -1.00 2.43 -91.77 -0.22 -1.23 16 3 C -0.14 -1.38 8.71 37.16 0.32 -1.05 16 4 C 0.51 6.99 6.52 -10.99 -0.07 6.92 16 5 O -0.50 -9.46 11.83 -21.08 -0.25 -9.71 16 6 N -0.61 -6.85 2.97 -166.53 -0.49 -7.34 16 7 C 0.11 0.69 6.27 -3.71 -0.02 0.66 16 8 C -0.14 -0.72 6.08 -26.61 -0.16 -0.89 16 9 C -0.12 -0.74 5.88 -26.69 -0.16 -0.89 16 10 C -0.12 -1.22 5.32 -26.61 -0.14 -1.36 16 11 C 0.16 2.03 3.34 -68.75 -0.23 1.80 16 12 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 13 C 0.48 8.74 4.52 36.01 0.16 8.90 16 14 O -0.50 -10.14 14.33 -26.93 -0.39 -10.52 16 15 O -0.33 -7.02 9.75 -46.75 -0.46 -7.48 16 16 C 0.07 1.52 5.94 36.00 0.21 1.73 16 17 C 0.44 11.69 7.86 -10.99 -0.09 11.60 16 18 O -0.57 -17.02 16.08 -14.11 -0.23 -17.25 16 19 N -0.57 -15.26 5.28 -10.97 -0.06 -15.32 16 20 C -0.38 -11.19 9.68 -14.93 -0.14 -11.34 16 21 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 22 C -0.01 -0.22 5.50 -17.47 -0.10 -0.31 16 23 N -0.90 -25.86 13.68 55.50 0.76 -25.10 16 24 Si 1.09 24.77 29.92 -169.99 -5.09 19.68 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 7.89 -51.93 -0.41 -0.02 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.60 6.27 -51.93 -0.33 0.27 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.42 5.17 -51.93 -0.27 0.16 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 43 H 0.08 1.60 8.13 -51.93 -0.42 1.18 16 44 H 0.09 1.88 8.13 -51.93 -0.42 1.45 16 45 H 0.38 9.40 6.73 -40.82 -0.27 9.12 16 46 H 0.26 7.32 6.78 -40.82 -0.28 7.04 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -38.74 373.94 -7.90 -46.64 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.04 Total: 6.97 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -0.30 Total: 13.79 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.21 Total: -47.76 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.32 Total: -44.96 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.09 Total: 19.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.74 -7.90 -46.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.495 kcal (2) G-P(sol) polarization free energy of solvation -38.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds