Wall clock time and date at job start Fri Apr 10 2020 18:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 C 1.50699 * 109.46823 * 119.99995 * 2 1 3 5 5 O 1.21286 * 119.99772 * 264.15189 * 4 2 1 6 6 N 1.34775 * 120.00112 * 84.16336 * 4 2 1 7 7 C 1.46922 * 120.63080 * 5.71147 * 6 4 2 8 8 C 1.53197 * 108.77496 * 233.63353 * 7 6 4 9 9 C 1.53039 * 109.31212 * 305.36483 * 8 7 6 10 10 C 1.53043 * 109.53910 * 61.36649 * 9 8 7 11 11 C 1.46929 * 120.62952 * 185.73935 * 6 4 2 12 12 H 1.08998 * 109.70302 * 246.22568 * 11 6 4 13 13 C 1.50708 * 109.58674 * 6.57806 * 11 6 4 14 14 O 1.20823 * 120.00086 * 61.25179 * 13 11 6 15 15 O 1.34228 * 119.99737 * 241.25564 * 13 11 6 16 16 C 1.45202 * 116.99851 * 179.97438 * 15 13 11 17 17 C 1.50695 * 109.47245 * 180.02562 * 16 15 13 18 18 O 1.21291 * 119.99784 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00170 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00330 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99813 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99877 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00578 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99648 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47189 * 180.02562 * 24 22 20 26 26 H 1.48496 * 109.47393 * 300.00402 * 24 22 20 27 27 H 1.48506 * 109.46728 * 60.00631 * 24 22 20 28 28 H 1.09002 * 109.46997 * 54.83353 * 1 2 3 29 29 H 1.09000 * 109.47314 * 174.82947 * 1 2 3 30 30 H 1.08995 * 109.47169 * 294.83185 * 1 2 3 31 31 H 1.09005 * 109.46956 * 239.99731 * 2 1 3 32 32 H 1.09006 * 109.46856 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46798 * 299.99406 * 3 2 1 34 34 H 1.08994 * 109.47302 * 59.99532 * 3 2 1 35 35 H 1.09006 * 109.58332 * 113.85215 * 7 6 4 36 36 H 1.08995 * 109.58772 * 353.41869 * 7 6 4 37 37 H 1.08999 * 109.49853 * 185.41500 * 8 7 6 38 38 H 1.08997 * 109.52114 * 65.33182 * 8 7 6 39 39 H 1.09000 * 109.46647 * 301.34539 * 9 8 7 40 40 H 1.09007 * 109.45981 * 181.38236 * 9 8 7 41 41 H 1.08999 * 109.50108 * 178.68219 * 10 9 8 42 42 H 1.09004 * 109.49733 * 58.58202 * 10 9 8 43 43 H 1.08997 * 109.46862 * 59.99680 * 16 15 13 44 44 H 1.09005 * 109.46837 * 300.00279 * 16 15 13 45 45 H 0.97005 * 119.99967 * 359.97438 * 19 17 16 46 46 H 0.97003 * 119.99563 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3353 -0.0735 2.2172 6 7 2.1450 -2.0534 1.2344 7 6 1.9022 -2.8286 0.0102 8 6 0.8593 -3.9100 0.3100 9 6 1.3273 -4.7479 1.5020 10 6 1.4627 -3.8522 2.7356 11 6 2.5124 -2.7702 2.4633 12 1 3.4912 -3.2336 2.3397 13 6 2.5532 -1.8037 3.6189 14 8 1.5543 -1.2055 3.9417 15 8 3.6993 -1.6075 4.2894 16 6 3.6650 -0.6618 5.3908 17 6 5.0319 -0.5725 6.0189 18 8 5.9450 -1.2405 5.5817 19 7 5.2397 0.2496 7.0665 20 6 6.4832 0.3306 7.6383 21 1 7.2962 -0.2642 7.2490 22 6 6.6975 1.1786 8.7179 23 7 5.7083 1.9027 9.1913 24 14 8.3919 1.2893 9.4966 25 1 8.3569 2.2569 10.6225 26 1 8.7911 -0.0474 10.0054 27 1 9.3743 1.7462 8.4810 28 1 -0.3633 0.5919 -0.8401 29 1 -0.3634 -1.0235 -0.0926 30 1 -0.3633 0.4316 0.9326 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 2.8309 -3.2971 -0.3159 36 1 1.5291 -2.1682 -0.7725 37 1 0.7406 -4.5528 -0.5623 38 1 -0.0949 -3.4398 0.5480 39 1 2.2930 -5.1983 1.2726 40 1 0.5987 -5.5336 1.7020 41 1 1.7734 -4.4538 3.5897 42 1 0.5031 -3.3821 2.9509 43 1 2.9436 -0.9977 6.1356 44 1 3.3720 0.3197 5.0179 45 1 4.5095 0.7842 7.4159 46 1 4.8285 1.8454 8.7867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:43 Heat of formation + Delta-G solvation = -182.899170 kcal Electronic energy + Delta-G solvation = -29072.715728 eV Core-core repulsion = 24961.526891 eV Total energy + Delta-G solvation = -4111.188837 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.44638 -40.96483 -40.08567 -38.66851 -37.47213 -36.45884 -35.65321 -33.87877 -33.37582 -32.64249 -30.12099 -28.15003 -27.37030 -26.39859 -25.03294 -24.48409 -22.32408 -21.82087 -21.58256 -20.14848 -19.77520 -19.22065 -18.47923 -18.27765 -17.74258 -17.12079 -17.00365 -16.57137 -16.30823 -15.78836 -15.61899 -15.54514 -15.27232 -15.17120 -14.89643 -14.55723 -14.26986 -14.15693 -13.82883 -13.65706 -13.49158 -13.44503 -13.18887 -12.95617 -12.85573 -12.61389 -12.24597 -12.16560 -12.03989 -11.99752 -11.91463 -11.91445 -11.77293 -11.64501 -11.61776 -11.38217 -10.67229 -10.64520 -10.26323 -9.86032 -9.04255 -6.19980 0.96056 1.31682 1.40564 1.48388 1.53725 1.80645 1.82577 1.92285 2.38017 2.78646 3.05348 3.36048 3.57209 3.62899 3.74917 3.81097 3.84528 3.92210 3.96168 3.99562 4.01622 4.05045 4.14376 4.28096 4.48174 4.62694 4.67371 4.71633 4.78556 4.80053 4.83658 4.93507 5.00623 5.06700 5.14912 5.22518 5.25096 5.29841 5.39420 5.42989 5.50388 5.81906 6.17526 6.37553 6.52810 6.68744 7.01507 7.23694 7.65766 8.42239 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.002853 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.934018 B = 9811.306794 C =10632.714791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 C -0.137 4.137 4 C 0.496 3.504 5 O -0.567 6.567 6 N -0.603 5.603 7 C 0.097 3.903 8 C -0.133 4.133 9 C -0.112 4.112 10 C -0.119 4.119 11 C 0.155 3.845 12 H 0.112 0.888 13 C 0.470 3.530 14 O -0.525 6.525 15 O -0.349 6.349 16 C 0.083 3.917 17 C 0.443 3.557 18 O -0.610 6.610 19 N -0.570 5.570 20 C -0.416 4.416 21 H 0.080 0.920 22 C -0.037 4.037 23 N -0.909 5.909 24 Si 1.139 2.861 25 H -0.270 1.270 26 H -0.268 1.268 27 H -0.270 1.270 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.133 0.867 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.036 0.964 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.387 0.613 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.460 -11.676 -24.804 30.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C -0.194 4.194 4 C 0.286 3.714 5 O -0.446 6.446 6 N -0.339 5.339 7 C -0.023 4.023 8 C -0.171 4.171 9 C -0.150 4.150 10 C -0.157 4.157 11 C 0.050 3.950 12 H 0.129 0.871 13 C 0.314 3.686 14 O -0.414 6.414 15 O -0.264 6.264 16 C 0.006 3.994 17 C 0.230 3.770 18 O -0.496 6.496 19 N -0.209 5.209 20 C -0.544 4.544 21 H 0.099 0.901 22 C -0.236 4.236 23 N -0.547 5.547 24 Si 0.957 3.043 25 H -0.194 1.194 26 H -0.193 1.193 27 H -0.195 1.195 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.150 0.850 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.055 0.945 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.104 0.896 45 H 0.221 0.779 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.116 -10.849 -23.252 28.817 hybrid contribution -1.323 0.038 -0.284 1.354 sum -14.439 -10.811 -23.535 29.653 Atomic orbital electron populations 1.21742 0.90981 1.03829 1.02700 1.21396 0.98861 0.96988 0.94917 1.21686 1.00638 0.94458 1.02649 1.21863 0.76519 0.82153 0.90848 1.90742 1.50802 1.65970 1.37080 1.48332 1.69493 1.05582 1.10499 1.22363 1.01110 0.94651 0.84142 1.21987 0.98086 0.97247 0.99760 1.21547 1.03663 0.97312 0.92444 1.21935 0.96946 0.95215 1.01630 1.20870 1.02674 0.90188 0.81238 0.87060 1.23741 0.80573 0.81003 0.83280 1.90579 1.36742 1.46837 1.67239 1.86467 1.37669 1.58539 1.43759 1.22269 0.95415 0.93519 0.88236 1.19982 0.89969 0.83902 0.83193 1.90501 1.45999 1.48014 1.65087 1.41794 1.12017 1.38514 1.28615 1.20634 0.88529 1.28542 1.16705 0.90148 1.28085 1.09652 0.91603 0.94286 1.70968 1.02340 1.39454 1.41906 0.82605 0.68094 0.77706 0.75940 1.19432 1.19306 1.19545 0.88453 0.90442 0.94907 0.84951 0.93706 0.88517 0.94505 0.88869 0.86393 0.86812 0.91685 0.89899 0.89088 0.89731 0.91752 0.88098 0.89560 0.77892 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.09 71.98 0.65 -1.16 16 2 C -0.10 -1.70 2.43 -11.54 -0.03 -1.72 16 3 C -0.14 -2.70 8.71 71.98 0.63 -2.08 16 4 C 0.50 13.54 6.52 87.66 0.57 14.11 16 5 O -0.57 -22.58 11.83 22.41 0.27 -22.31 16 6 N -0.60 -12.83 2.97 -799.16 -2.38 -15.21 16 7 C 0.10 0.87 6.27 86.36 0.54 1.41 16 8 C -0.13 -0.83 6.08 30.67 0.19 -0.65 16 9 C -0.11 -1.05 5.88 30.62 0.18 -0.87 16 10 C -0.12 -2.22 5.32 30.67 0.16 -2.05 16 11 C 0.16 4.01 3.34 44.23 0.15 4.16 16 12 H 0.11 2.68 8.14 -2.39 -0.02 2.67 16 13 C 0.47 17.95 4.52 71.24 0.32 18.27 16 14 O -0.53 -22.30 14.33 29.79 0.43 -21.87 16 15 O -0.35 -15.69 9.75 -44.23 -0.43 -16.13 16 16 C 0.08 3.82 5.94 71.23 0.42 4.24 16 17 C 0.44 24.23 7.86 87.66 0.69 24.92 16 18 O -0.61 -37.86 16.08 15.73 0.25 -37.61 16 19 N -0.57 -31.75 5.28 -306.99 -1.62 -33.38 16 20 C -0.42 -24.91 9.68 84.04 0.81 -24.10 16 21 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 22 C -0.04 -2.10 5.50 84.93 0.47 -1.63 16 23 N -0.91 -52.50 13.68 21.66 0.30 -52.21 16 24 Si 1.14 49.36 29.92 68.60 2.05 51.41 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.76 7.89 -2.39 -0.02 0.74 16 30 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.13 1.15 6.27 -2.38 -0.01 1.14 16 32 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.04 0.95 7.87 -2.39 -0.02 0.93 16 35 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.12 0.48 5.17 -2.39 -0.01 0.47 16 37 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.42 7.93 -2.38 -0.02 1.40 16 43 H 0.10 4.16 8.13 -2.39 -0.02 4.14 16 44 H 0.09 3.95 8.13 -2.38 -0.02 3.93 16 45 H 0.39 19.90 6.73 -92.70 -0.62 19.28 16 46 H 0.26 14.67 6.78 -92.71 -0.63 14.04 16 Total: -1.00 -89.55 373.94 5.14 -84.42 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.51 Total: 30.01 kcal Atomic # 6 Polarization: 27.11 SS G_CDS: 5.76 Total: 32.87 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -3.70 Total: -100.79 kcal Atomic # 8 Polarization: -98.43 SS G_CDS: 0.51 Total: -97.92 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.05 Total: 51.41 kcal Total: -89.55 5.14 -84.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.481 kcal (2) G-P(sol) polarization free energy of solvation -89.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds