Wall clock time and date at job start Fri Apr 10 2020 18:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47111 * 2 1 4 4 C 1.50702 * 109.47036 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99819 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00175 * 180.02562 * 4 3 2 7 7 C 1.46926 * 120.62994 * 359.97438 * 6 4 3 8 8 C 1.53192 * 108.77820 * 233.62963 * 7 6 4 9 9 C 1.53033 * 109.31270 * 305.36633 * 8 7 6 10 10 C 1.53041 * 109.53898 * 61.36218 * 9 8 7 11 11 H 1.09002 * 109.50075 * 58.58639 * 10 9 8 12 12 C 1.50700 * 109.52504 * 178.66881 * 10 9 8 13 13 O 1.20824 * 120.00275 * 119.85356 * 12 10 9 14 14 O 1.34229 * 119.99861 * 299.85591 * 12 10 9 15 15 C 1.45201 * 117.00055 * 179.97438 * 14 12 10 16 16 C 1.50699 * 109.47405 * 179.97438 * 15 14 12 17 17 O 1.21300 * 119.99717 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00190 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00133 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99842 * 0.02562 * 19 18 16 21 21 C 1.38944 * 120.00091 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00203 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00052 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47067 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47170 * 120.00087 * 23 21 19 26 26 H 1.48501 * 109.47244 * 240.00579 * 23 21 19 27 27 C 1.46927 * 120.63425 * 180.02562 * 6 4 3 28 28 H 1.09003 * 109.46940 * 299.99856 * 1 2 3 29 29 H 1.08995 * 109.46826 * 59.99911 * 1 2 3 30 30 H 1.08994 * 109.46816 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46940 * 240.00144 * 2 1 3 32 32 H 1.09001 * 109.46989 * 120.00507 * 2 1 3 33 33 H 1.08997 * 109.46837 * 60.00608 * 3 2 1 34 34 H 1.08989 * 109.47214 * 300.00188 * 3 2 1 35 35 H 1.09006 * 109.58406 * 353.41879 * 7 6 4 36 36 H 1.09002 * 109.59019 * 113.83868 * 7 6 4 37 37 H 1.09000 * 109.49511 * 65.31256 * 8 7 6 38 38 H 1.08995 * 109.49883 * 185.40976 * 8 7 6 39 39 H 1.08999 * 109.45957 * 301.34633 * 9 8 7 40 40 H 1.09001 * 109.46425 * 181.38151 * 9 8 7 41 41 H 1.09001 * 109.47185 * 300.00148 * 15 14 12 42 42 H 1.09008 * 109.46902 * 59.99874 * 15 14 12 43 43 H 0.97005 * 120.00122 * 359.97438 * 18 16 15 44 44 H 0.97003 * 120.00414 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.58859 * 246.15938 * 27 6 4 46 46 H 1.09000 * 109.58547 * 6.58356 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2210 2.6096 -0.0002 7 6 3.5004 3.8900 0.0003 8 6 4.0081 4.7420 -1.1673 9 6 5.5295 4.8769 -1.0714 10 6 6.1732 3.4919 -1.1683 11 1 5.8889 3.0236 -2.1107 12 6 7.6728 3.6281 -1.1067 13 8 8.2925 3.0886 -0.2209 14 8 8.3200 4.3488 -2.0360 15 6 9.7642 4.4371 -1.9138 16 6 10.3127 5.2793 -3.0367 17 8 9.5605 5.7576 -3.8594 18 7 11.6391 5.5001 -3.1275 19 6 12.1382 6.2659 -4.1494 20 1 11.4683 6.6924 -4.8814 21 6 13.5056 6.4940 -4.2427 22 7 14.3206 5.9755 -3.3518 23 14 14.1857 7.5368 -5.6355 24 1 13.0691 7.9993 -6.4983 25 1 14.8954 8.7133 -5.0721 26 1 15.1331 6.7271 -6.4430 27 6 5.6901 2.6258 -0.0014 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 2.4321 3.7082 -0.1175 36 1 3.6829 4.4117 0.9398 37 1 3.7442 4.2620 -2.1096 38 1 3.5516 5.7307 -1.1217 39 1 5.7941 5.3344 -0.1181 40 1 5.8907 5.5031 -1.8872 41 1 10.0207 4.8938 -0.9579 42 1 10.1951 3.4372 -1.9661 43 1 12.2407 5.1174 -2.4699 44 1 15.2753 6.1344 -3.4171 45 1 6.0517 3.0441 0.9379 46 1 6.0667 1.6098 -0.1203 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:52 Heat of formation + Delta-G solvation = -175.680227 kcal Electronic energy + Delta-G solvation = -27447.262265 eV Core-core repulsion = 23336.386465 eV Total energy + Delta-G solvation = -4110.875801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96203 -40.08186 -38.27360 -37.59367 -36.13293 -34.80124 -34.01710 -33.42775 -31.73988 -31.38717 -28.84744 -28.20523 -25.58777 -25.09697 -24.17515 -22.35148 -21.74498 -20.31677 -19.59631 -19.26735 -18.08679 -17.75917 -17.29783 -16.45560 -16.42032 -16.13670 -16.10098 -15.44520 -14.93943 -14.66018 -14.64070 -14.44681 -14.15686 -13.97383 -13.68058 -13.38901 -13.33907 -13.19537 -12.89868 -12.41359 -12.26243 -12.18323 -12.10818 -11.72524 -11.67536 -11.63638 -11.34876 -11.26943 -11.16394 -11.11886 -10.98057 -10.43369 -10.40197 -10.37111 -10.28659 -10.04383 -9.62980 -9.01678 -8.53624 -8.09677 -6.51235 -3.93388 2.24597 2.28011 2.43148 2.89823 3.10749 3.23031 3.30451 3.72233 4.07388 4.09777 4.27728 4.45833 4.48190 4.49777 4.57430 4.61668 4.67947 4.92074 4.96155 5.03406 5.08264 5.09839 5.13810 5.19747 5.23196 5.32194 5.37541 5.48263 5.51801 5.54507 5.64974 5.68121 5.69381 5.77246 5.86384 5.93723 5.94227 6.03953 6.11274 6.60030 7.04187 7.46699 7.79395 7.87248 7.94585 8.47032 9.05845 9.38041 9.87746 10.65999 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.033784 B = 0.001942 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.586284 B =14411.649084 C =14706.848743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.514 3.486 5 O -0.537 6.537 6 N -0.614 5.614 7 C 0.102 3.898 8 C -0.133 4.133 9 C -0.115 4.115 10 C -0.092 4.092 11 H 0.113 0.887 12 C 0.466 3.534 13 O -0.511 6.511 14 O -0.322 6.322 15 C 0.060 3.940 16 C 0.438 3.562 17 O -0.576 6.576 18 N -0.553 5.553 19 C -0.303 4.303 20 H 0.107 0.893 21 C 0.025 3.975 22 N -0.896 5.896 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.128 3.872 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.395 0.605 44 H 0.273 0.727 45 H 0.080 0.920 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.147 -5.534 9.309 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.302 3.698 5 O -0.414 6.414 6 N -0.348 5.348 7 C -0.020 4.020 8 C -0.171 4.171 9 C -0.153 4.153 10 C -0.113 4.113 11 H 0.131 0.869 12 C 0.308 3.692 13 O -0.400 6.400 14 O -0.237 6.237 15 C -0.018 4.018 16 C 0.223 3.777 17 O -0.461 6.461 18 N -0.190 5.190 19 C -0.432 4.432 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.537 5.537 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.005 3.995 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.228 0.772 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.908 -5.914 9.023 27.144 hybrid contribution 1.099 0.353 -0.156 1.164 sum -23.810 -5.561 8.866 26.008 Atomic orbital electron populations 1.21791 0.95406 1.02046 1.01753 1.21306 0.95296 0.94627 1.03683 1.21754 0.91539 1.00286 1.04282 1.20828 0.90453 0.82970 0.75505 1.90722 1.70409 1.30890 1.49333 1.48140 1.06565 1.06283 1.73838 1.21873 0.96801 0.83977 0.99389 1.21934 0.95599 1.00751 0.98862 1.21555 0.95002 0.94446 1.04297 1.21338 0.87843 0.99531 1.02541 0.86901 1.23421 0.91053 0.75463 0.79273 1.90670 1.69136 1.44968 1.35199 1.86538 1.22375 1.64965 1.49774 1.22770 0.76914 1.01799 1.00294 1.19314 0.83706 0.86690 0.87977 1.90560 1.57504 1.54534 1.43453 1.41716 1.04587 1.45651 1.27029 1.19779 0.91500 1.26492 1.05390 0.87551 1.25316 0.95811 0.98052 0.98588 1.69620 1.04449 1.44465 1.35166 0.85740 0.78906 0.79085 0.80257 1.19098 1.20621 1.20610 1.21371 0.78998 1.01976 0.97124 0.92697 0.92651 0.92361 0.91165 0.91214 0.88867 0.88770 0.89289 0.90823 0.90844 0.89648 0.90914 0.89136 0.89520 0.89513 0.77153 0.91663 0.90160 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.11 -0.78 5.22 -26.73 -0.14 -0.92 16 3 C -0.14 -0.85 4.05 -27.88 -0.11 -0.97 16 4 C 0.51 5.21 7.70 -10.99 -0.08 5.13 16 5 O -0.54 -7.75 15.40 5.55 0.09 -7.66 16 6 N -0.61 -5.53 2.97 -172.80 -0.51 -6.04 16 7 C 0.10 0.57 6.34 -3.71 -0.02 0.55 16 8 C -0.13 -0.82 6.08 -26.61 -0.16 -0.98 16 9 C -0.12 -1.07 5.11 -26.69 -0.14 -1.20 16 10 C -0.09 -1.06 2.78 -91.68 -0.25 -1.31 16 11 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 12 C 0.47 7.21 7.26 36.01 0.26 7.47 16 13 O -0.51 -8.85 15.67 -18.75 -0.29 -9.14 16 14 O -0.32 -5.89 9.64 -45.90 -0.44 -6.33 16 15 C 0.06 1.14 5.94 36.01 0.21 1.35 16 16 C 0.44 10.53 7.86 -10.99 -0.09 10.44 16 17 O -0.58 -15.89 16.08 -14.12 -0.23 -16.12 16 18 N -0.55 -13.95 5.29 -10.96 -0.06 -14.01 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 20 H 0.11 3.06 7.16 -52.48 -0.38 2.68 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 22 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 23 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.13 1.44 5.06 -3.74 -0.02 1.42 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.09 0.40 7.94 -51.93 -0.41 -0.02 16 34 H 0.09 0.42 7.69 -51.94 -0.40 0.02 16 35 H 0.09 0.29 5.93 -51.93 -0.31 -0.02 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.09 1.50 8.13 -51.93 -0.42 1.07 16 42 H 0.09 1.53 8.13 -51.92 -0.42 1.10 16 43 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 46 H 0.10 1.38 7.01 -51.93 -0.36 1.02 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -34.43 383.05 -7.61 -42.04 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.22 Total: 6.51 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -0.42 Total: 12.67 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.15 Total: -43.34 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.88 Total: -39.26 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.43 -7.61 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.641 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds