Wall clock time and date at job start Fri Apr 10 2020 18:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46879 * 2 1 4 4 C 1.52997 * 109.47350 * 175.00076 * 3 2 1 5 5 C 1.52993 * 109.47480 * 184.99910 * 4 3 2 6 6 N 1.46498 * 109.46870 * 295.00180 * 3 2 1 7 7 C 1.46764 * 124.35200 * 120.00033 * 6 3 2 8 8 C 1.54481 * 105.55051 * 162.91600 * 7 6 3 9 9 H 1.08994 * 110.96747 * 143.58049 * 8 7 6 10 10 C 1.50703 * 110.96960 * 267.33900 * 8 7 6 11 11 O 1.21299 * 119.99856 * 0.02562 * 10 8 7 12 12 N 1.34775 * 120.00157 * 179.97438 * 10 8 7 13 13 C 1.37097 * 120.00156 * 180.02562 * 12 10 8 14 14 H 1.07998 * 120.00168 * 16.43688 * 13 12 10 15 15 C 1.38947 * 119.99983 * 196.43922 * 13 12 10 16 16 N 1.31416 * 120.00120 * 21.67776 * 15 13 12 17 17 Si 1.86800 * 119.99994 * 201.67362 * 15 13 12 18 18 H 1.48497 * 109.46956 * 60.00034 * 17 15 13 19 19 H 1.48500 * 109.47050 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47031 * 299.99900 * 17 15 13 21 21 C 1.46501 * 119.99494 * 0.02562 * 12 10 8 22 22 C 1.50702 * 109.47105 * 84.13298 * 21 12 10 23 23 O 1.20827 * 119.99745 * 359.97438 * 22 21 12 24 24 O 1.34232 * 120.00003 * 179.97438 * 22 21 12 25 25 C 1.54855 * 101.65977 * 25.43474 * 8 7 6 26 26 C 1.34424 * 124.35037 * 299.97465 * 6 3 2 27 27 O 1.21282 * 124.93809 * 0.44802 * 26 6 3 28 28 H 1.08998 * 109.47340 * 299.99670 * 1 2 3 29 29 H 1.08999 * 109.47678 * 60.00380 * 1 2 3 30 30 H 1.09005 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47340 * 240.00330 * 2 1 3 32 32 H 1.08997 * 109.47160 * 119.99574 * 2 1 3 33 33 H 1.08998 * 109.46660 * 54.99731 * 3 2 1 34 34 H 1.09006 * 109.47109 * 305.00401 * 4 3 2 35 35 H 1.09005 * 109.47170 * 64.99474 * 4 3 2 36 36 H 1.09000 * 109.47640 * 180.02562 * 5 4 3 37 37 H 1.08996 * 109.47298 * 300.00370 * 5 4 3 38 38 H 1.09008 * 109.46977 * 60.00051 * 5 4 3 39 39 H 1.08994 * 110.24461 * 281.96273 * 7 6 3 40 40 H 1.09000 * 110.24550 * 43.87287 * 7 6 3 41 41 H 0.96999 * 120.00391 * 180.02562 * 16 15 13 42 42 H 1.09006 * 109.46500 * 204.12586 * 21 12 10 43 43 H 1.08993 * 109.47596 * 324.12290 * 21 12 10 44 44 H 0.96694 * 116.99657 * 179.97438 * 24 22 21 45 45 H 1.09008 * 110.46373 * 216.51403 * 25 8 7 46 46 H 1.08995 * 110.60067 * 93.93846 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5647 1.4445 0.1257 5 6 4.0643 2.8852 0.2511 6 7 1.6523 2.0975 -1.2518 7 6 0.8073 3.2948 -1.3329 8 6 1.0288 3.8625 -2.7525 9 1 0.1052 4.2788 -3.1545 10 6 2.1286 4.8928 -2.7558 11 8 2.7041 5.1689 -1.7243 12 7 2.4735 5.5067 -3.9049 13 6 3.4743 6.4436 -3.9080 14 1 4.1594 6.5048 -3.0754 15 6 3.6074 7.3146 -4.9824 16 7 2.5813 7.5486 -5.7695 17 14 5.2446 8.1530 -5.3080 18 1 6.2882 7.1244 -5.5487 19 1 5.1245 9.0262 -6.5031 20 1 5.6223 8.9754 -4.1306 21 6 1.7788 5.1728 -5.1508 22 6 0.5085 5.9778 -5.2489 23 8 0.2136 6.7507 -4.3683 24 8 -0.2952 5.8361 -6.3147 25 6 1.4536 2.5948 -3.5338 26 6 2.0251 1.6793 -2.4737 27 8 2.7186 0.7091 -2.6941 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6052 1.9815 0.8418 34 1 3.8570 0.8802 1.0113 35 1 4.0029 0.9837 -0.7597 36 1 5.1507 2.8866 0.3402 37 1 3.7720 3.4495 -0.6344 38 1 3.6262 3.3459 1.1365 39 1 -0.2400 3.0275 -1.1927 40 1 1.1136 4.0241 -0.5830 41 1 2.6742 8.1563 -6.5198 42 1 2.4226 5.4051 -5.9992 43 1 1.5370 4.1100 -5.1584 44 1 -1.0989 6.3734 -6.3329 45 1 2.2137 2.8411 -4.2754 46 1 0.5906 2.1322 -4.0125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736900883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:20 Heat of formation + Delta-G solvation = -151.929099 kcal Electronic energy + Delta-G solvation = -30467.055531 eV Core-core repulsion = 26357.209657 eV Total energy + Delta-G solvation = -4109.845874 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -40.76733 -39.38544 -38.16774 -36.39214 -35.54377 -35.09004 -34.54056 -32.02045 -31.90833 -30.51849 -27.78287 -27.39147 -26.36916 -25.08130 -22.49016 -21.94704 -21.76297 -21.10562 -18.93440 -18.65577 -17.32677 -17.06622 -16.88670 -16.52643 -15.76699 -15.54168 -15.03932 -14.62970 -14.56105 -14.32036 -14.24952 -14.05545 -13.69145 -13.48442 -12.97386 -12.87205 -12.77976 -12.62526 -12.40184 -12.25087 -11.96230 -11.76808 -11.60232 -11.47871 -11.20548 -11.16230 -10.99922 -10.93118 -10.74389 -10.66350 -10.57135 -10.53536 -10.45115 -10.36472 -9.71115 -9.29015 -9.11298 -8.61193 -8.38766 -7.99759 -6.53058 -3.96833 2.87678 3.10825 3.20310 3.23286 3.24489 3.33869 3.51060 3.95407 4.14973 4.51288 4.52711 4.69312 4.84769 4.97409 5.04981 5.10365 5.16254 5.28848 5.38129 5.52352 5.57482 5.60612 5.67929 5.69994 5.80094 5.84530 5.88539 5.96404 6.04534 6.07911 6.11664 6.17151 6.26997 6.30310 6.34711 6.45548 6.49610 6.86819 6.91400 7.39783 7.41918 7.47500 7.87840 8.27355 8.48069 8.92743 8.99885 9.21307 9.72982 10.55542 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.004549 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.189679 B = 6154.297105 C = 7162.192998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.163 3.837 4 C -0.138 4.138 5 C -0.156 4.156 6 N -0.600 5.600 7 C 0.120 3.880 8 C -0.119 4.119 9 H 0.105 0.895 10 C 0.467 3.533 11 O -0.563 6.563 12 N -0.425 5.425 13 C -0.306 4.306 14 H 0.108 0.892 15 C 0.031 3.969 16 N -0.880 5.880 17 Si 0.929 3.071 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.136 3.864 22 C 0.489 3.511 23 O -0.503 6.503 24 O -0.534 6.534 25 C -0.156 4.156 26 C 0.526 3.474 27 O -0.537 6.537 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.272 0.728 42 H 0.129 0.871 43 H 0.083 0.917 44 H 0.393 0.607 45 H 0.109 0.891 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.365 -10.416 3.832 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C 0.060 3.940 4 C -0.176 4.176 5 C -0.213 4.213 6 N -0.334 5.334 7 C -0.003 4.003 8 C -0.142 4.142 9 H 0.123 0.877 10 C 0.255 3.745 11 O -0.446 6.446 12 N -0.144 5.144 13 C -0.433 4.433 14 H 0.126 0.874 15 C -0.172 4.172 16 N -0.520 5.520 17 Si 0.755 3.245 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.009 3.991 22 C 0.329 3.671 23 O -0.388 6.388 24 O -0.345 6.345 25 C -0.196 4.196 26 C 0.314 3.686 27 O -0.415 6.415 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.147 0.853 43 H 0.101 0.899 44 H 0.249 0.751 45 H 0.127 0.873 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.425 -10.692 4.416 12.777 hybrid contribution -0.064 1.257 -0.464 1.341 sum -5.490 -9.435 3.952 11.610 Atomic orbital electron populations 1.21715 0.95764 1.01239 1.01691 1.21951 0.96156 0.96532 1.03272 1.21017 0.95080 0.92616 0.85244 1.21919 0.94706 0.98497 1.02480 1.21823 1.00041 0.95863 1.03588 1.48201 1.50487 1.28845 1.05848 1.21969 0.93747 0.86793 0.97765 1.22314 1.00530 0.95011 0.96299 0.87688 1.19548 0.85601 0.85452 0.83872 1.90510 1.55590 1.67438 1.31078 1.43347 1.31031 1.35772 1.04222 1.19659 1.05498 1.11543 1.06553 0.87410 1.25223 0.98570 0.96333 0.97041 1.69786 1.28401 1.35580 1.18204 0.85946 0.81683 0.78887 0.77964 1.19759 1.20980 1.19800 1.20904 0.90390 0.95376 0.92388 1.23822 0.83760 0.81511 0.78006 1.90620 1.72338 1.34993 1.40888 1.84527 1.36598 1.65896 1.47477 1.22603 1.03566 0.95026 0.98393 1.20653 0.79278 0.84414 0.84268 1.90649 1.38458 1.28434 1.83977 0.92986 0.92719 0.93026 0.90257 0.91233 0.89689 0.91770 0.90584 0.93551 0.89859 0.93464 0.91287 0.88550 0.91752 0.85340 0.89902 0.75092 0.87295 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.80 37.16 0.36 -1.12 16 2 C -0.14 -1.64 5.36 -26.73 -0.14 -1.78 16 3 C 0.16 2.14 2.26 -67.93 -0.15 1.98 16 4 C -0.14 -1.96 5.36 -26.74 -0.14 -2.10 16 5 C -0.16 -2.50 9.80 37.15 0.36 -2.13 16 6 N -0.60 -8.87 1.74 -164.85 -0.29 -9.15 16 7 C 0.12 1.75 6.62 -3.12 -0.02 1.73 16 8 C -0.12 -1.97 2.67 -90.02 -0.24 -2.21 16 9 H 0.11 1.63 7.42 -51.93 -0.39 1.25 16 10 C 0.47 10.30 6.74 -10.98 -0.07 10.23 16 11 O -0.56 -13.95 13.44 5.54 0.07 -13.87 16 12 N -0.42 -9.96 2.17 -116.09 -0.25 -10.21 16 13 C -0.31 -8.01 9.34 -14.93 -0.14 -8.15 16 14 H 0.11 2.98 7.37 -52.49 -0.39 2.60 16 15 C 0.03 0.78 4.87 -17.47 -0.09 0.70 16 16 N -0.88 -22.21 9.28 55.50 0.51 -21.69 16 17 Si 0.93 20.03 29.60 -169.99 -5.03 15.00 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C 0.14 2.75 4.75 -5.19 -0.02 2.72 16 22 C 0.49 10.04 5.81 36.01 0.21 10.25 16 23 O -0.50 -12.22 16.79 -18.75 -0.31 -12.53 16 24 O -0.53 -8.84 13.42 -39.26 -0.53 -9.36 16 25 C -0.16 -2.31 5.20 -26.62 -0.14 -2.45 16 26 C 0.53 8.72 7.37 -10.86 -0.08 8.64 16 27 O -0.54 -10.24 15.02 5.56 0.08 -10.15 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.11 6.62 -51.93 -0.34 0.76 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.26 6.65 -51.93 -0.35 0.92 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.64 5.94 -51.93 -0.31 1.33 16 38 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.10 1.57 7.02 -51.93 -0.36 1.21 16 41 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 42 H 0.13 2.76 6.37 -51.93 -0.33 2.43 16 43 H 0.08 1.35 4.55 -51.93 -0.24 1.12 16 44 H 0.39 4.89 9.10 45.56 0.41 5.31 16 45 H 0.11 1.72 6.17 -51.92 -0.32 1.40 16 46 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 365.21 15.07 5.50 5.50 Total: -1.00 -32.45 365.21 -6.49 -38.93 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -5.95 Total: 11.22 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: -0.30 Total: 16.32 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -0.02 Total: -41.06 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.68 Total: -45.92 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.45 -6.49 -38.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736900883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.994 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds