Wall clock time and date at job start Fri Apr 10 2020 18:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46878 * 2 1 4 4 C 1.50704 * 109.46672 * 180.02562 * 3 2 1 5 5 O 1.21275 * 120.00334 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99579 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.63401 * 359.97438 * 6 4 3 8 8 C 1.53192 * 108.77834 * 233.63401 * 7 6 4 9 9 C 1.53045 * 109.30949 * 305.36576 * 8 7 6 10 10 C 1.53031 * 109.54241 * 61.36366 * 9 8 7 11 11 H 1.09008 * 109.49925 * 58.61708 * 10 9 8 12 12 C 1.50691 * 109.50139 * 178.68074 * 10 9 8 13 13 O 1.21291 * 120.00052 * 25.53061 * 12 10 9 14 14 N 1.34777 * 120.00189 * 205.80293 * 12 10 9 15 15 C 1.37099 * 119.99918 * 184.95180 * 14 12 10 16 16 H 1.08006 * 120.00199 * 16.38920 * 15 14 12 17 17 C 1.38949 * 119.99718 * 196.39806 * 15 14 12 18 18 N 1.31403 * 120.00352 * 20.42405 * 17 15 14 19 19 Si 1.86803 * 119.99659 * 200.42354 * 17 15 14 20 20 H 1.48497 * 109.47439 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47167 * 119.99752 * 19 17 15 22 22 H 1.48505 * 109.47341 * 239.99473 * 19 17 15 23 23 C 1.46498 * 120.00217 * 4.94616 * 14 12 10 24 24 C 1.50703 * 109.46921 * 90.79319 * 23 14 12 25 25 O 1.20826 * 119.99902 * 0.02562 * 24 23 14 26 26 O 1.34227 * 120.00050 * 180.02562 * 24 23 14 27 27 C 1.46930 * 120.62973 * 180.02562 * 6 4 3 28 28 H 1.09004 * 109.47185 * 299.99707 * 1 2 3 29 29 H 1.09003 * 109.47530 * 59.99707 * 1 2 3 30 30 H 1.08998 * 109.47231 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47185 * 240.00293 * 2 1 3 32 32 H 1.08995 * 109.47455 * 119.99972 * 2 1 3 33 33 H 1.08998 * 109.47057 * 60.00862 * 3 2 1 34 34 H 1.08996 * 109.47382 * 299.99782 * 3 2 1 35 35 H 1.09007 * 109.58382 * 113.84486 * 7 6 4 36 36 H 1.09001 * 109.70050 * 353.49226 * 7 6 4 37 37 H 1.09001 * 109.49632 * 185.41195 * 8 7 6 38 38 H 1.08993 * 109.49710 * 65.31575 * 8 7 6 39 39 H 1.09003 * 109.45713 * 301.34152 * 9 8 7 40 40 H 1.09001 * 109.44556 * 181.38499 * 9 8 7 41 41 H 0.97005 * 120.00209 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.47479 * 210.79243 * 23 14 12 43 43 H 1.08999 * 109.47183 * 330.79802 * 23 14 12 44 44 H 0.96699 * 116.99937 * 180.02562 * 26 24 23 45 45 H 1.08996 * 109.58352 * 6.58033 * 27 6 4 46 46 H 1.09006 * 109.58225 * 246.15404 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2208 2.6097 -0.0002 7 6 3.5002 3.8902 0.0003 8 6 4.0078 4.7421 -1.1673 9 6 5.5293 4.8770 -1.0715 10 6 6.1731 3.4921 -1.1684 11 1 5.8892 3.0240 -2.1110 12 6 7.6725 3.6289 -1.1065 13 8 8.1718 4.5859 -0.5532 14 7 8.4587 2.6908 -1.6706 15 6 9.8204 2.7610 -1.5272 16 1 10.2512 3.3911 -0.7631 17 6 10.6461 2.0215 -2.3651 18 7 10.1909 1.5843 -3.5176 19 14 12.4036 1.6490 -1.8531 20 1 12.6692 2.2498 -0.5214 21 1 12.5969 0.1784 -1.7806 22 1 13.3421 2.2229 -2.8507 23 6 7.8583 1.5960 -2.4368 24 6 7.7545 1.9953 -3.8863 25 8 8.1427 3.0826 -4.2427 26 8 7.2308 1.1430 -4.7813 27 6 5.6900 2.6259 -0.0014 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.6829 4.4119 0.9398 36 1 2.4315 3.7104 -0.1161 37 1 3.5513 5.7309 -1.1217 38 1 3.7438 4.2622 -2.1096 39 1 5.7939 5.3346 -0.1182 40 1 5.8902 5.5033 -1.8874 41 1 10.7673 1.0678 -4.1024 42 1 8.4817 0.7063 -2.3488 43 1 6.8632 1.3825 -2.0467 44 1 7.1854 1.4436 -5.6993 45 1 6.0665 1.6100 -0.1202 46 1 6.0515 3.0444 0.9380 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736949697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:26 Heat of formation + Delta-G solvation = -183.946123 kcal Electronic energy + Delta-G solvation = -29762.379716 eV Core-core repulsion = 25651.145479 eV Total energy + Delta-G solvation = -4111.234237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74748 -40.94170 -40.06241 -38.20124 -37.04458 -36.31812 -35.31236 -34.12010 -33.66151 -32.26838 -29.59200 -29.02895 -27.17245 -26.13212 -24.78413 -22.91641 -22.83942 -22.08807 -20.36949 -19.89369 -19.04496 -18.74372 -18.25948 -17.97375 -17.43026 -16.89877 -16.87051 -16.48024 -16.22496 -16.02328 -15.83861 -15.24359 -15.10088 -14.85387 -14.59689 -14.38759 -13.98319 -13.82625 -13.75235 -13.55854 -13.47827 -13.39447 -12.82989 -12.77560 -12.58147 -12.47469 -12.41035 -12.18549 -12.12818 -12.08508 -11.93247 -11.72426 -11.61997 -11.55398 -11.49405 -11.03033 -10.85472 -10.42330 -9.93410 -9.67598 -8.48834 -6.01645 1.30371 1.38500 1.53467 1.60323 1.69911 1.81432 1.97271 2.24072 2.51735 2.87516 3.06313 3.52320 3.64443 3.76672 3.88920 4.00929 4.06047 4.11558 4.15917 4.19120 4.26563 4.45417 4.58836 4.61037 4.66395 4.71656 4.74818 4.78232 4.85016 4.87857 4.91051 4.96773 5.08069 5.16252 5.31003 5.34806 5.38898 5.39268 5.43971 5.54839 5.93883 5.96317 6.31796 6.45712 7.04127 7.19708 7.25194 7.46039 7.85097 8.58034 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015160 B = 0.003840 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.537137 B = 7289.856306 C = 7717.771965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.129 4.129 4 C 0.503 3.497 5 O -0.589 6.589 6 N -0.610 5.610 7 C 0.102 3.898 8 C -0.125 4.125 9 C -0.097 4.097 10 C -0.101 4.101 11 H 0.075 0.925 12 C 0.454 3.546 13 O -0.614 6.614 14 N -0.442 5.442 15 C -0.341 4.341 16 H 0.082 0.918 17 C -0.003 4.003 18 N -0.892 5.892 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.262 1.262 22 H -0.282 1.282 23 C 0.151 3.849 24 C 0.503 3.497 25 O -0.544 6.544 26 O -0.522 6.522 27 C 0.133 3.867 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.274 0.726 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.412 0.588 45 H 0.075 0.925 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.255 -1.205 3.734 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.168 4.168 4 C 0.294 3.706 5 O -0.469 6.469 6 N -0.342 5.342 7 C -0.019 4.019 8 C -0.163 4.163 9 C -0.135 4.135 10 C -0.124 4.124 11 H 0.094 0.906 12 C 0.243 3.757 13 O -0.500 6.500 14 N -0.161 5.161 15 C -0.468 4.468 16 H 0.100 0.900 17 C -0.204 4.204 18 N -0.531 5.531 19 Si 0.820 3.180 20 H -0.194 1.194 21 H -0.187 1.187 22 H -0.208 1.208 23 C 0.025 3.975 24 C 0.345 3.655 25 O -0.432 6.432 26 O -0.334 6.334 27 C 0.009 3.991 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.129 0.871 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.272 0.728 45 H 0.093 0.907 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.495 -1.239 4.158 20.949 hybrid contribution 1.890 0.062 -0.971 2.126 sum -18.605 -1.177 3.188 18.912 Atomic orbital electron populations 1.21744 0.93326 1.02322 1.02902 1.21282 0.96939 0.94924 1.01865 1.21824 0.87878 1.00308 1.06804 1.21714 0.92226 0.82245 0.74413 1.90692 1.71704 1.32689 1.51804 1.48296 1.05347 1.07679 1.72915 1.22142 0.98161 0.82183 0.99413 1.21945 0.92789 1.02289 0.99242 1.21323 0.96679 0.93145 1.02389 1.21481 0.90716 1.00083 1.00073 0.90642 1.20787 0.89525 0.82045 0.83297 1.90474 1.76861 1.32384 1.50285 1.43647 1.06257 1.21879 1.44306 1.19711 0.81337 1.28811 1.16949 0.89989 1.26033 1.04187 0.96788 0.93362 1.69674 1.39117 1.36359 1.07944 0.84835 0.76407 0.78594 0.78173 1.19428 1.18650 1.20835 1.20625 0.99443 0.92181 0.85202 1.23435 0.71048 0.81483 0.89547 1.90575 1.45669 1.26236 1.80767 1.84444 1.76586 1.49160 1.23255 1.21177 0.81401 0.99782 0.96787 0.91376 0.91525 0.92597 0.93237 0.93055 0.85900 0.86153 0.89724 0.85321 0.87116 0.91280 0.91415 0.93529 0.91526 0.87368 0.87824 0.72841 0.90680 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.81 16 2 C -0.11 -1.86 5.22 30.59 0.16 -1.70 16 3 C -0.13 -1.81 4.05 29.85 0.12 -1.69 16 4 C 0.50 12.67 7.70 87.66 0.67 13.34 16 5 O -0.59 -20.68 15.39 -3.01 -0.05 -20.73 16 6 N -0.61 -14.84 2.97 -818.95 -2.43 -17.27 16 7 C 0.10 1.55 6.34 86.36 0.55 2.09 16 8 C -0.12 -2.30 6.08 30.67 0.19 -2.12 16 9 C -0.10 -3.01 4.68 30.62 0.14 -2.87 16 10 C -0.10 -3.77 1.82 -11.48 -0.02 -3.79 16 11 H 0.08 2.84 6.43 -2.38 -0.02 2.82 16 12 C 0.45 22.80 6.73 87.65 0.59 23.39 16 13 O -0.61 -35.17 15.80 -3.07 -0.05 -35.22 16 14 N -0.44 -23.46 2.11 -639.61 -1.35 -24.81 16 15 C -0.34 -19.75 9.33 84.04 0.78 -18.97 16 16 H 0.08 5.05 7.41 -2.91 -0.02 5.03 16 17 C 0.00 -0.14 4.93 84.93 0.42 0.28 16 18 N -0.89 -48.09 8.45 21.66 0.18 -47.91 16 19 Si 1.00 43.44 29.60 68.60 2.03 45.47 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 C 0.15 7.04 4.89 85.63 0.42 7.46 16 24 C 0.50 23.52 5.94 71.24 0.42 23.94 16 25 O -0.54 -29.92 16.37 21.96 0.36 -29.56 16 26 O -0.52 -19.44 13.42 -51.39 -0.69 -20.13 16 27 C 0.13 4.39 5.55 86.35 0.48 4.87 16 28 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 1.02 8.10 -2.38 -0.02 1.00 16 32 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 33 H 0.12 1.03 7.94 -2.39 -0.02 1.01 16 34 H 0.12 1.09 7.70 -2.39 -0.02 1.08 16 35 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.13 0.89 5.95 -2.39 -0.01 0.88 16 37 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 2.19 7.91 -2.39 -0.02 2.17 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 42 H 0.11 5.22 6.79 -2.39 -0.02 5.20 16 43 H 0.10 4.20 5.35 -2.39 -0.01 4.19 16 44 H 0.41 11.63 9.10 -74.06 -0.67 10.95 16 45 H 0.07 2.81 6.11 -2.39 -0.01 2.79 16 46 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -82.55 368.97 3.97 -78.58 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.33 Total: 28.14 kcal Atomic # 6 Polarization: 37.79 SS G_CDS: 5.64 Total: 43.43 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -3.60 Total: -89.99 kcal Atomic # 8 Polarization: -105.21 SS G_CDS: -0.43 Total: -105.63 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -82.55 3.97 -78.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736949697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.364 kcal (2) G-P(sol) polarization free energy of solvation -82.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds