Wall clock time and date at job start Fri Apr 10 2020 18:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99964 * 2 1 4 4 H 1.48501 * 109.47368 * 264.98758 * 3 2 1 5 5 H 1.48502 * 109.47215 * 24.98618 * 3 2 1 6 6 H 1.48507 * 109.47060 * 144.98391 * 3 2 1 7 7 C 1.38951 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99896 * 201.39317 * 7 2 1 9 9 N 1.37094 * 119.99750 * 21.38729 * 7 2 1 10 10 C 1.46503 * 120.00182 * 11.50988 * 9 7 2 11 11 C 1.50697 * 109.47301 * 264.66923 * 10 9 7 12 12 O 1.20827 * 120.00171 * 359.97438 * 11 10 9 13 13 O 1.34233 * 120.00017 * 179.97438 * 11 10 9 14 14 C 1.34780 * 120.00065 * 191.51530 * 9 7 2 15 15 O 1.21292 * 119.99693 * 359.97438 * 14 9 7 16 16 C 1.50699 * 119.99810 * 180.02562 * 14 9 7 17 17 N 1.46506 * 109.46681 * 179.97438 * 16 14 9 18 18 C 1.34780 * 119.99686 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00156 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.99692 * 179.97438 * 18 17 16 21 21 C 1.52997 * 109.46929 * 179.97438 * 20 18 17 22 22 C 1.53001 * 109.47349 * 180.02562 * 21 20 18 23 23 C 1.54967 * 110.92092 * 71.53878 * 22 21 20 24 24 C 1.54269 * 104.16047 * 156.30097 * 23 22 21 25 25 C 1.53878 * 106.63644 * 336.44268 * 24 23 22 26 26 C 1.54270 * 106.59987 * 359.97438 * 25 24 23 27 27 H 0.97003 * 119.99910 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47057 * 24.66774 * 10 9 7 29 29 H 1.09001 * 109.46975 * 144.66546 * 10 9 7 30 30 H 0.96695 * 116.99810 * 179.97438 * 13 11 10 31 31 H 1.08999 * 109.47531 * 60.00064 * 16 14 9 32 32 H 1.08992 * 109.47193 * 299.99360 * 16 14 9 33 33 H 0.96993 * 120.00072 * 359.97438 * 17 16 14 34 34 H 1.08999 * 109.46654 * 60.00020 * 20 18 17 35 35 H 1.08998 * 109.47466 * 300.00208 * 20 18 17 36 36 H 1.08999 * 109.47397 * 60.00523 * 21 20 18 37 37 H 1.09004 * 109.47492 * 300.00016 * 21 20 18 38 38 H 1.08999 * 110.66980 * 308.23871 * 22 21 20 39 39 H 1.08994 * 110.48022 * 37.64362 * 23 22 21 40 40 H 1.09002 * 110.53251 * 274.97583 * 23 22 21 41 41 H 1.08993 * 110.03506 * 217.13685 * 24 23 22 42 42 H 1.08997 * 110.03461 * 95.74663 * 24 23 22 43 43 H 1.09004 * 110.02946 * 119.25866 * 25 24 23 44 44 H 1.08995 * 110.03450 * 240.63811 * 25 24 23 45 45 H 1.08999 * 110.48671 * 142.28788 * 26 25 24 46 46 H 1.08997 * 110.48524 * 264.79294 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.6016 1.9853 -1.3947 5 1 1.3966 2.6810 0.5914 6 1 3.4887 1.4731 0.8034 7 6 2.0089 -1.2033 -0.0005 8 1 3.0330 -1.2356 0.3406 9 7 1.3943 -2.3495 -0.4340 10 6 0.1062 -2.2726 -1.1277 11 6 -1.0106 -2.4850 -0.1385 12 8 -0.7567 -2.6810 1.0264 13 8 -2.2875 -2.4564 -0.5515 14 6 1.9750 -3.5472 -0.2219 15 8 3.0416 -3.6108 0.3521 16 6 1.2995 -4.8070 -0.6989 17 7 2.1256 -5.9658 -0.3506 18 6 1.7183 -7.2074 -0.6808 19 8 0.6678 -7.3654 -1.2659 20 6 2.5682 -8.3993 -0.3230 21 6 1.8825 -9.6784 -0.8072 22 6 2.7450 -10.8886 -0.4434 23 6 2.7122 -11.1526 1.0833 24 6 3.0665 -12.6483 1.2153 25 6 2.7039 -13.3071 -0.1272 26 6 2.1410 -12.1891 -1.0290 27 1 -0.4850 0.8401 -0.0004 28 1 0.0004 -1.2911 -1.5898 29 1 0.0614 -3.0432 -1.8973 30 1 -2.9692 -2.5983 0.1195 31 1 1.1724 -4.7640 -1.7806 32 1 0.3240 -4.8993 -0.2218 33 1 2.9659 -5.8394 0.1170 34 1 2.6958 -8.4429 0.7586 35 1 3.5437 -8.3065 -0.8004 36 1 1.7546 -9.6351 -1.8888 37 1 0.9072 -9.7711 -0.3294 38 1 3.7694 -10.7487 -0.7886 39 1 1.7165 -10.9598 1.4823 40 1 3.4542 -10.5384 1.5935 41 1 2.4875 -13.0995 2.0210 42 1 4.1324 -12.7636 1.4119 43 1 3.5941 -13.7413 -0.5825 44 1 1.9496 -14.0786 0.0271 45 1 2.4663 -12.3303 -2.0597 46 1 1.0527 -12.1657 -0.9732 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:49 Heat of formation + Delta-G solvation = -177.172444 kcal Electronic energy + Delta-G solvation = -27900.560581 eV Core-core repulsion = 23789.620073 eV Total energy + Delta-G solvation = -4110.940508 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.88593 -39.35323 -38.49701 -38.05500 -35.46309 -34.74171 -33.89832 -33.28054 -31.92091 -29.13235 -28.79317 -27.87452 -27.08590 -24.58875 -23.14941 -21.22695 -20.58279 -20.15860 -19.92952 -19.32403 -17.32205 -17.20981 -16.94460 -16.19062 -15.95725 -15.86871 -15.49677 -15.43229 -15.00490 -14.55552 -14.40586 -14.38421 -14.04257 -13.65247 -13.55891 -13.26055 -12.97104 -12.41932 -12.23569 -12.10333 -11.84558 -11.73610 -11.58270 -11.53986 -11.32353 -11.26533 -11.01986 -10.95607 -10.73741 -10.65086 -10.53995 -10.52522 -10.47145 -10.41005 -9.79715 -9.65479 -9.14869 -8.80444 -8.77881 -8.11454 -6.57598 -4.00967 2.85922 3.05474 3.17644 3.21492 3.32510 3.38509 3.51545 3.96372 4.14214 4.34060 4.41666 4.50595 4.62220 4.90759 4.93970 4.95711 5.06799 5.23921 5.30619 5.36228 5.37115 5.43720 5.48170 5.52269 5.59391 5.68805 5.70243 5.76398 5.86571 5.88891 5.92563 5.96257 6.01575 6.10434 6.18878 6.32210 6.36479 6.55432 6.64048 7.40778 7.43671 7.76523 7.82524 8.20266 8.47087 8.89627 8.93755 9.14791 9.62283 10.49830 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.002342 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.556040 B =11951.779452 C =12643.104385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.029 3.971 3 Si 0.934 3.066 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.112 0.888 9 N -0.422 5.422 10 C 0.135 3.865 11 C 0.491 3.509 12 O -0.509 6.509 13 O -0.530 6.530 14 C 0.448 3.552 15 O -0.577 6.577 16 C 0.106 3.894 17 N -0.710 5.710 18 C 0.509 3.491 19 O -0.551 6.551 20 C -0.139 4.139 21 C -0.094 4.094 22 C -0.094 4.094 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.120 4.120 27 H 0.274 0.726 28 H 0.142 0.858 29 H 0.080 0.920 30 H 0.394 0.606 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.411 0.589 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 -17.347 -3.208 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.130 0.870 9 N -0.141 5.141 10 C 0.009 3.991 11 C 0.331 3.669 12 O -0.395 6.395 13 O -0.341 6.341 14 C 0.236 3.764 15 O -0.462 6.462 16 C -0.022 4.022 17 N -0.364 5.364 18 C 0.296 3.704 19 O -0.430 6.430 20 C -0.179 4.179 21 C -0.132 4.132 22 C -0.112 4.112 23 C -0.161 4.161 24 C -0.163 4.163 25 C -0.163 4.163 26 C -0.158 4.158 27 H 0.084 0.916 28 H 0.160 0.840 29 H 0.097 0.903 30 H 0.250 0.750 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.249 0.751 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.689 -17.295 -3.291 17.686 hybrid contribution -0.015 1.023 0.873 1.345 sum 1.673 -16.272 -2.418 16.536 Atomic orbital electron populations 1.69828 1.06113 1.28299 1.47877 1.25273 0.95419 1.00149 0.96546 0.85805 0.79322 0.80159 0.78642 1.20060 1.21006 1.19348 1.19788 0.98081 0.83073 1.42156 0.87021 1.43418 1.15951 1.05520 1.49176 1.20963 0.80834 1.05888 0.91447 1.23815 0.82477 0.70804 0.89772 1.90626 1.83964 1.45193 1.19709 1.84521 1.17852 1.85588 1.46158 1.19838 0.87966 0.84131 0.84461 1.90503 1.23615 1.85740 1.46313 1.21046 0.94925 0.85380 1.00841 1.45780 1.25708 1.05138 1.59791 1.20721 0.86650 0.84214 0.78828 1.90675 1.24288 1.86072 1.41917 1.21674 0.99775 0.92969 1.03452 1.21329 0.98648 0.91264 1.01982 1.22201 0.99459 0.94228 0.95334 1.22494 1.01808 0.95711 0.96059 1.22132 1.01018 0.95825 0.97367 1.22131 1.00534 0.97968 0.95671 1.22402 1.00571 0.94064 0.98758 0.91574 0.84043 0.90253 0.74978 0.89888 0.90001 0.75145 0.88884 0.88920 0.91123 0.91096 0.90561 0.91410 0.91582 0.92089 0.92049 0.92091 0.92103 0.91774 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.29 9.27 55.50 0.51 -21.78 16 2 C 0.03 0.72 4.95 -17.47 -0.09 0.64 16 3 Si 0.93 19.85 29.60 -169.99 -5.03 14.82 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.30 -8.06 9.42 -14.93 -0.14 -8.20 16 8 H 0.11 3.10 7.31 -52.49 -0.38 2.71 16 9 N -0.42 -10.31 2.17 -116.10 -0.25 -10.56 16 10 C 0.14 2.88 4.98 -5.19 -0.03 2.86 16 11 C 0.49 10.80 6.05 36.00 0.22 11.02 16 12 O -0.51 -13.11 17.03 -18.75 -0.32 -13.43 16 13 O -0.53 -9.53 13.42 -39.27 -0.53 -10.06 16 14 C 0.45 10.48 7.51 -10.98 -0.08 10.40 16 15 O -0.58 -14.83 15.27 5.55 0.08 -14.75 16 16 C 0.11 2.05 4.76 -5.19 -0.02 2.02 16 17 N -0.71 -12.07 5.53 -61.47 -0.34 -12.41 16 18 C 0.51 7.96 7.83 -10.98 -0.09 7.88 16 19 O -0.55 -10.32 15.98 5.56 0.09 -10.24 16 20 C -0.14 -1.52 5.59 -27.88 -0.16 -1.68 16 21 C -0.09 -0.99 4.01 -26.73 -0.11 -1.09 16 22 C -0.09 -0.79 2.86 -88.59 -0.25 -1.04 16 23 C -0.12 -1.00 5.71 -25.03 -0.14 -1.14 16 24 C -0.13 -0.92 6.80 -25.61 -0.17 -1.10 16 25 C -0.13 -0.90 6.80 -25.61 -0.17 -1.08 16 26 C -0.12 -0.96 6.27 -25.07 -0.16 -1.11 16 27 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.14 3.13 6.01 -51.93 -0.31 2.82 16 29 H 0.08 1.39 6.66 -51.93 -0.35 1.05 16 30 H 0.39 5.42 9.10 45.56 0.41 5.84 16 31 H 0.08 1.47 7.41 -51.93 -0.38 1.09 16 32 H 0.08 1.67 7.56 -51.93 -0.39 1.27 16 33 H 0.41 6.74 7.44 -40.82 -0.30 6.44 16 34 H 0.09 0.91 7.66 -51.93 -0.40 0.51 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.80 8.10 -51.93 -0.42 0.37 16 37 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.59 7.95 -51.93 -0.41 0.17 16 40 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -33.02 377.78 -7.77 -40.79 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -6.29 Total: 13.55 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: -1.39 Total: 18.36 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.08 Total: -44.74 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.67 Total: -48.47 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.02 -7.77 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.384 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds