Wall clock time and date at job start Fri Apr 10 2020 18:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99964 * 2 1 4 4 H 1.48501 * 109.47368 * 264.98758 * 3 2 1 5 5 H 1.48502 * 109.47215 * 24.98618 * 3 2 1 6 6 H 1.48507 * 109.47060 * 144.98391 * 3 2 1 7 7 C 1.38951 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99896 * 201.39317 * 7 2 1 9 9 N 1.37094 * 119.99750 * 21.38729 * 7 2 1 10 10 C 1.46503 * 120.00182 * 11.50988 * 9 7 2 11 11 C 1.50697 * 109.47301 * 264.66923 * 10 9 7 12 12 O 1.20827 * 120.00171 * 359.97438 * 11 10 9 13 13 O 1.34233 * 120.00017 * 179.97438 * 11 10 9 14 14 C 1.34780 * 120.00065 * 191.51530 * 9 7 2 15 15 O 1.21292 * 119.99693 * 359.97438 * 14 9 7 16 16 C 1.50699 * 119.99810 * 180.02562 * 14 9 7 17 17 N 1.46506 * 109.46681 * 179.97438 * 16 14 9 18 18 C 1.34780 * 119.99686 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00156 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.99692 * 179.97438 * 18 17 16 21 21 C 1.52997 * 109.46929 * 179.97438 * 20 18 17 22 22 C 1.53001 * 109.47349 * 180.02562 * 21 20 18 23 23 C 1.54967 * 110.92092 * 71.53878 * 22 21 20 24 24 C 1.54269 * 104.16047 * 156.30097 * 23 22 21 25 25 C 1.53878 * 106.63644 * 336.44268 * 24 23 22 26 26 C 1.54270 * 106.59987 * 359.97438 * 25 24 23 27 27 H 0.97003 * 119.99910 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47057 * 24.66774 * 10 9 7 29 29 H 1.09001 * 109.46975 * 144.66546 * 10 9 7 30 30 H 0.96695 * 116.99810 * 179.97438 * 13 11 10 31 31 H 1.08999 * 109.47531 * 60.00064 * 16 14 9 32 32 H 1.08992 * 109.47193 * 299.99360 * 16 14 9 33 33 H 0.96993 * 120.00072 * 359.97438 * 17 16 14 34 34 H 1.08999 * 109.46654 * 60.00020 * 20 18 17 35 35 H 1.08998 * 109.47466 * 300.00208 * 20 18 17 36 36 H 1.08999 * 109.47397 * 60.00523 * 21 20 18 37 37 H 1.09004 * 109.47492 * 300.00016 * 21 20 18 38 38 H 1.08999 * 110.66980 * 308.23871 * 22 21 20 39 39 H 1.08994 * 110.48022 * 37.64362 * 23 22 21 40 40 H 1.09002 * 110.53251 * 274.97583 * 23 22 21 41 41 H 1.08993 * 110.03506 * 217.13685 * 24 23 22 42 42 H 1.08997 * 110.03461 * 95.74663 * 24 23 22 43 43 H 1.09004 * 110.02946 * 119.25866 * 25 24 23 44 44 H 1.08995 * 110.03450 * 240.63811 * 25 24 23 45 45 H 1.08999 * 110.48671 * 142.28788 * 26 25 24 46 46 H 1.08997 * 110.48524 * 264.79294 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.6016 1.9853 -1.3947 5 1 1.3966 2.6810 0.5914 6 1 3.4887 1.4731 0.8034 7 6 2.0089 -1.2033 -0.0005 8 1 3.0330 -1.2356 0.3406 9 7 1.3943 -2.3495 -0.4340 10 6 0.1062 -2.2726 -1.1277 11 6 -1.0106 -2.4850 -0.1385 12 8 -0.7567 -2.6810 1.0264 13 8 -2.2875 -2.4564 -0.5515 14 6 1.9750 -3.5472 -0.2219 15 8 3.0416 -3.6108 0.3521 16 6 1.2995 -4.8070 -0.6989 17 7 2.1256 -5.9658 -0.3506 18 6 1.7183 -7.2074 -0.6808 19 8 0.6678 -7.3654 -1.2659 20 6 2.5682 -8.3993 -0.3230 21 6 1.8825 -9.6784 -0.8072 22 6 2.7450 -10.8886 -0.4434 23 6 2.7122 -11.1526 1.0833 24 6 3.0665 -12.6483 1.2153 25 6 2.7039 -13.3071 -0.1272 26 6 2.1410 -12.1891 -1.0290 27 1 -0.4850 0.8401 -0.0004 28 1 0.0004 -1.2911 -1.5898 29 1 0.0614 -3.0432 -1.8973 30 1 -2.9692 -2.5983 0.1195 31 1 1.1724 -4.7640 -1.7806 32 1 0.3240 -4.8993 -0.2218 33 1 2.9659 -5.8394 0.1170 34 1 2.6958 -8.4429 0.7586 35 1 3.5437 -8.3065 -0.8004 36 1 1.7546 -9.6351 -1.8888 37 1 0.9072 -9.7711 -0.3294 38 1 3.7694 -10.7487 -0.7886 39 1 1.7165 -10.9598 1.4823 40 1 3.4542 -10.5384 1.5935 41 1 2.4875 -13.0995 2.0210 42 1 4.1324 -12.7636 1.4119 43 1 3.5941 -13.7413 -0.5825 44 1 1.9496 -14.0786 0.0271 45 1 2.4663 -12.3303 -2.0597 46 1 1.0527 -12.1657 -0.9732 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739078426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:48 Heat of formation + Delta-G solvation = -199.202943 kcal Electronic energy + Delta-G solvation = -27901.515895 eV Core-core repulsion = 23789.620073 eV Total energy + Delta-G solvation = -4111.895822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.49006 -40.78773 -39.93847 -39.06273 -37.19215 -36.49999 -35.40772 -34.15776 -33.81229 -30.26850 -29.59594 -29.43767 -28.35019 -26.30747 -24.13749 -22.91936 -21.49598 -21.14895 -20.96314 -20.67028 -19.12360 -18.81410 -18.51134 -17.63700 -17.50577 -17.08636 -16.82073 -16.54481 -16.29792 -16.24394 -15.81316 -15.75980 -15.52850 -14.79700 -14.63715 -14.18037 -14.07998 -13.98363 -13.75110 -13.55074 -13.49818 -13.29440 -12.94311 -12.66749 -12.39663 -12.23714 -12.21299 -12.16400 -12.04895 -11.87839 -11.70050 -11.63524 -11.40129 -11.27594 -11.20518 -10.99824 -10.93715 -10.65474 -10.21348 -10.00173 -8.48456 -5.99447 1.32883 1.44000 1.54908 1.60146 1.61700 1.75752 2.01659 2.29501 2.47085 2.87399 3.06840 3.61224 3.68505 3.72008 3.85649 3.93251 4.11191 4.20470 4.28653 4.30659 4.36683 4.60302 4.66248 4.69385 4.73419 4.74451 4.78756 4.85406 4.86054 4.93683 5.04216 5.16047 5.20033 5.23175 5.29620 5.33858 5.41909 5.42722 5.56588 5.62319 5.88088 5.89592 6.28044 6.52169 6.99780 7.15455 7.22981 7.36041 7.75709 8.57091 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.002342 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.556040 B =11951.779452 C =12643.104385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.000 4.000 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.339 4.339 8 H 0.087 0.913 9 N -0.434 5.434 10 C 0.132 3.868 11 C 0.497 3.503 12 O -0.553 6.553 13 O -0.515 6.515 14 C 0.440 3.560 15 O -0.609 6.609 16 C 0.118 3.882 17 N -0.712 5.712 18 C 0.508 3.492 19 O -0.584 6.584 20 C -0.130 4.130 21 C -0.089 4.089 22 C -0.088 4.088 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.123 4.123 27 H 0.278 0.722 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.415 0.585 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.414 0.586 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 -17.953 -3.909 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.202 4.202 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.152 5.152 10 C 0.006 3.994 11 C 0.339 3.661 12 O -0.443 6.443 13 O -0.328 6.328 14 C 0.230 3.770 15 O -0.496 6.496 16 C -0.010 4.010 17 N -0.366 5.366 18 C 0.297 3.703 19 O -0.464 6.464 20 C -0.170 4.170 21 C -0.127 4.127 22 C -0.107 4.107 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.162 4.162 26 C -0.160 4.160 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.136 0.864 30 H 0.274 0.726 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.252 0.748 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.919 -17.917 -4.016 18.461 hybrid contribution -0.204 1.197 1.091 1.633 sum 1.715 -16.720 -2.925 17.060 Atomic orbital electron populations 1.69903 1.06873 1.29133 1.47231 1.26010 0.96229 1.02495 0.95467 0.84888 0.77670 0.76257 0.79130 1.18457 1.20518 1.20199 1.19715 0.97735 0.84783 1.44393 0.89477 1.43556 1.16967 1.05390 1.49278 1.21101 0.79610 1.06860 0.91783 1.23860 0.83584 0.69607 0.89019 1.90612 1.84827 1.47420 1.21438 1.84452 1.16970 1.84722 1.46615 1.20478 0.87612 0.85077 0.83820 1.90465 1.25002 1.86441 1.47644 1.20829 0.94206 0.84318 1.01604 1.45856 1.25609 1.05029 1.60133 1.21539 0.86550 0.84560 0.77625 1.90659 1.25913 1.86427 1.43393 1.21743 0.99853 0.90644 1.04722 1.21270 0.98318 0.91967 1.01138 1.22158 0.99509 0.93357 0.95651 1.22510 1.01519 0.96509 0.95758 1.22143 1.01511 0.95177 0.97522 1.22136 1.00931 0.97731 0.95418 1.22416 1.00126 0.94185 0.99284 0.91215 0.84716 0.86440 0.72555 0.88010 0.90951 0.74752 0.87214 0.86397 0.92093 0.92742 0.89445 0.92334 0.90982 0.91938 0.91332 0.91303 0.91813 0.91276 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.74 9.27 21.66 0.20 -44.54 16 2 C 0.00 -0.02 4.95 84.93 0.42 0.40 16 3 Si 1.00 40.49 29.60 68.60 2.03 42.52 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.34 -18.33 9.42 84.04 0.79 -17.54 16 8 H 0.09 5.03 7.31 -2.91 -0.02 5.00 16 9 N -0.43 -21.41 2.17 -639.60 -1.39 -22.80 16 10 C 0.13 5.55 4.98 85.63 0.43 5.98 16 11 C 0.50 21.55 6.05 71.24 0.43 21.98 16 12 O -0.55 -28.67 17.03 21.96 0.37 -28.30 16 13 O -0.52 -17.64 13.42 -51.45 -0.69 -18.33 16 14 C 0.44 20.88 7.51 87.66 0.66 21.54 16 15 O -0.61 -32.01 15.27 -3.07 -0.05 -32.05 16 16 C 0.12 4.54 4.76 85.63 0.41 4.95 16 17 N -0.71 -23.77 5.53 -466.78 -2.58 -26.35 16 18 C 0.51 15.43 7.83 87.66 0.69 16.11 16 19 O -0.58 -21.57 15.98 -3.03 -0.05 -21.62 16 20 C -0.13 -2.63 5.59 29.85 0.17 -2.46 16 21 C -0.09 -1.76 4.01 30.59 0.12 -1.64 16 22 C -0.09 -1.33 2.86 -9.48 -0.03 -1.36 16 23 C -0.13 -1.83 5.71 31.70 0.18 -1.65 16 24 C -0.13 -1.62 6.80 31.32 0.21 -1.41 16 25 C -0.12 -1.57 6.80 31.32 0.21 -1.36 16 26 C -0.12 -1.78 6.27 31.67 0.20 -1.58 16 27 H 0.28 13.15 8.31 -92.71 -0.77 12.38 16 28 H 0.14 5.88 6.01 -2.39 -0.01 5.87 16 29 H 0.12 3.95 6.66 -2.39 -0.02 3.93 16 30 H 0.41 10.63 9.10 -74.06 -0.67 9.95 16 31 H 0.10 3.48 7.41 -2.39 -0.02 3.47 16 32 H 0.07 2.94 7.56 -2.39 -0.02 2.92 16 33 H 0.41 13.40 7.44 -92.71 -0.69 12.71 16 34 H 0.11 1.91 7.66 -2.39 -0.02 1.89 16 35 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.05 1.25 7.96 -2.38 -0.02 1.23 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 0.96 7.95 -2.39 -0.02 0.94 16 40 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.06 0.95 8.05 -2.39 -0.02 0.93 16 Total: -1.00 -71.91 377.78 2.39 -69.52 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: -0.35 Total: 39.98 kcal Atomic # 6 Polarization: 37.08 SS G_CDS: 4.89 Total: 41.97 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -3.77 Total: -93.69 kcal Atomic # 8 Polarization: -99.89 SS G_CDS: -0.41 Total: -100.30 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -71.91 2.39 -69.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.685 kcal (2) G-P(sol) polarization free energy of solvation -71.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds