Wall clock time and date at job start Fri Apr 10 2020 18:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00134 * 2 1 4 4 H 1.48502 * 109.46866 * 239.99558 * 3 2 1 5 5 H 1.48494 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47121 * 120.00182 * 3 2 1 7 7 C 1.37878 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99886 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46905 * 179.97438 * 9 7 2 11 11 C 1.34786 * 120.00085 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99739 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00293 * 180.02562 * 11 10 9 14 14 O 1.45198 * 109.47406 * 180.02562 * 13 11 10 15 15 C 1.34230 * 117.00173 * 180.02562 * 14 13 11 16 16 O 1.20827 * 119.99597 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99758 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.46919 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47300 * 179.97438 * 18 17 15 20 20 O 1.21284 * 120.00109 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00137 * 179.97438 * 19 18 17 22 22 C 1.46506 * 119.99873 * 179.97438 * 21 19 18 23 23 C 1.54268 * 110.03351 * 272.90833 * 22 21 19 24 24 C 1.54960 * 104.16081 * 217.13577 * 23 22 21 25 25 C 1.54894 * 102.77798 * 37.89146 * 24 23 22 26 26 C 1.53876 * 110.02735 * 155.69309 * 22 21 19 27 27 H 0.97005 * 120.00024 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47617 * 59.99861 * 9 7 2 29 29 H 1.08998 * 109.47222 * 299.99682 * 9 7 2 30 30 H 0.97000 * 120.00462 * 0.02562 * 10 9 7 31 31 H 1.09003 * 109.47377 * 59.99509 * 13 11 10 32 32 H 1.09003 * 109.47273 * 300.00342 * 13 11 10 33 33 H 1.09000 * 109.47319 * 60.00517 * 17 15 14 34 34 H 1.08987 * 109.47394 * 299.99672 * 17 15 14 35 35 H 1.09004 * 109.46930 * 60.00101 * 18 17 15 36 36 H 1.09000 * 109.47312 * 300.00045 * 18 17 15 37 37 H 0.96995 * 120.00018 * 0.27749 * 21 19 18 38 38 H 1.08996 * 110.01518 * 34.30257 * 22 21 19 39 39 H 1.09004 * 110.48628 * 335.78894 * 23 22 21 40 40 H 1.09007 * 110.48293 * 98.42755 * 23 22 21 41 41 H 1.08999 * 110.72063 * 279.58023 * 24 23 22 42 42 H 1.09000 * 110.91947 * 156.29644 * 24 23 22 43 43 H 1.09000 * 110.48739 * 203.40857 * 25 24 23 44 44 H 1.09000 * 110.59948 * 80.80998 * 25 24 23 45 45 H 1.08997 * 110.03107 * 238.56635 * 26 22 21 46 46 H 1.08992 * 110.03504 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2028 -3.6127 0.0005 11 6 1.7535 -4.8835 0.0011 12 8 0.5611 -5.1050 0.0011 13 6 2.7327 -6.0289 0.0016 14 8 2.0067 -7.2864 0.0015 15 6 2.7377 -8.4121 0.0025 16 8 3.9443 -8.3489 0.0030 17 6 2.0534 -9.7548 0.0031 18 6 3.1071 -10.8642 0.0036 19 6 2.4230 -12.2068 0.0047 20 8 1.2118 -12.2703 0.0046 21 7 3.1569 -13.3372 0.0048 22 6 2.4917 -14.6425 0.0065 23 6 2.1878 -15.0789 1.4546 24 6 2.4274 -16.6098 1.4475 25 6 3.6578 -16.7597 0.5185 26 6 3.4257 -15.7108 -0.5888 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8903 30 1 3.1565 -3.4356 0.0009 31 1 3.3594 -5.9708 0.8916 32 1 3.3595 -5.9716 -0.8883 33 1 1.4311 -9.8458 -0.8872 34 1 1.4304 -9.8447 0.8927 35 1 3.7299 -10.7733 0.8936 36 1 3.7300 -10.7741 -0.8864 37 1 4.1256 -13.2865 0.0082 38 1 1.5680 -14.5912 -0.5697 39 1 2.8685 -14.5896 2.1513 40 1 1.1522 -14.8553 1.7110 41 1 1.5653 -17.1332 1.0341 42 1 2.6539 -16.9730 2.4499 43 1 3.6943 -17.7623 0.0925 44 1 4.5774 -16.5432 1.0621 45 1 2.9548 -16.1786 -1.4533 46 1 4.3740 -15.2581 -0.8785 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767757545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:58 Heat of formation + Delta-G solvation = -183.651477 kcal Electronic energy + Delta-G solvation = -26087.241613 eV Core-core repulsion = 21976.020153 eV Total energy + Delta-G solvation = -4111.221460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.79541 -40.24538 -38.74748 -38.18225 -36.46859 -34.24757 -34.10384 -33.30295 -32.40867 -29.44023 -29.26431 -28.39440 -26.85038 -25.51122 -22.63903 -21.50950 -21.16193 -20.78277 -20.37726 -19.93209 -18.28787 -17.48604 -17.16221 -16.98158 -16.73230 -16.12519 -15.89943 -15.69005 -15.34566 -15.01338 -14.93259 -14.61814 -14.20675 -13.94151 -13.85383 -13.58198 -13.03754 -12.83556 -12.72771 -12.45947 -12.21916 -12.02447 -11.97833 -11.77128 -11.70257 -11.59132 -11.57922 -11.29042 -11.15978 -11.03629 -10.90944 -10.71070 -10.66327 -10.34723 -10.21165 -9.48547 -9.45717 -9.17780 -8.77896 -7.98823 -6.19346 -4.27039 2.07505 2.25941 2.28284 2.86415 3.17841 3.24211 3.29185 3.30628 3.93698 4.00506 4.09444 4.23725 4.33778 4.35077 4.58944 4.67863 4.79044 4.86447 4.94228 4.98856 5.01720 5.11867 5.12537 5.16547 5.22351 5.22734 5.26130 5.34128 5.38649 5.42521 5.53401 5.57563 5.64051 5.70480 5.79569 6.11407 6.32258 7.04799 7.22654 7.30647 7.45997 7.57254 7.65085 7.82569 7.92091 8.49800 8.71012 8.96410 9.39320 10.90717 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.053570 B = 0.001435 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.557120 B =19508.354549 C =19801.468418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.498 3.502 12 O -0.533 6.533 13 C 0.049 3.951 14 O -0.327 6.327 15 C 0.463 3.537 16 O -0.517 6.517 17 C -0.098 4.098 18 C -0.130 4.130 19 C 0.515 3.485 20 O -0.535 6.535 21 N -0.727 5.727 22 C 0.138 3.862 23 C -0.136 4.136 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.132 4.132 27 H 0.267 0.733 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.393 0.607 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.401 0.599 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.168 -32.973 0.598 34.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.281 3.719 12 O -0.410 6.410 13 C -0.029 4.029 14 O -0.241 6.241 15 C 0.307 3.693 16 O -0.406 6.406 17 C -0.136 4.136 18 C -0.170 4.170 19 C 0.302 3.698 20 O -0.412 6.412 21 N -0.379 5.379 22 C 0.034 3.966 23 C -0.174 4.174 24 C -0.163 4.163 25 C -0.162 4.162 26 C -0.170 4.170 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.225 0.775 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.236 0.764 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.576 -32.956 0.580 34.324 hybrid contribution 1.600 1.162 0.007 1.977 sum 11.176 -31.794 0.587 33.706 Atomic orbital electron populations 1.69965 1.06121 1.27526 1.48545 1.24948 0.94928 0.99468 0.94589 0.86446 0.79394 0.82197 0.78707 1.20039 1.21031 1.20046 1.21170 0.93287 0.90324 1.53696 0.91823 1.19175 0.88170 0.81516 0.98052 1.46366 1.11488 1.05357 1.72486 1.19903 0.89147 0.84004 0.78817 1.90718 1.16323 1.84535 1.49454 1.22872 0.94378 0.81081 1.04555 1.86576 1.40385 1.14027 1.83118 1.23722 0.86442 0.87021 0.72144 1.90660 1.15583 1.88148 1.46192 1.21029 0.98513 0.86233 1.07833 1.21443 0.98769 0.90510 1.06260 1.20608 0.87761 0.85975 0.75456 1.90747 1.13954 1.87636 1.48836 1.46195 1.10163 1.05554 1.76019 1.21674 0.96605 0.81581 0.96754 1.22816 1.02463 0.95752 0.96415 1.22495 0.98097 0.95825 0.99881 1.22362 0.98507 0.98834 0.96534 1.22446 0.99628 0.96111 0.98810 0.92307 0.95244 0.95237 0.77453 0.88494 0.88500 0.86594 0.86596 0.87745 0.87730 0.76405 0.88992 0.91113 0.90928 0.91216 0.91276 0.91358 0.91436 0.90644 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.55 -14.64 9.28 -34.44 -0.32 -14.96 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 10 N -0.71 -14.60 5.55 -61.47 -0.34 -14.94 16 11 C 0.50 10.02 7.91 -10.98 -0.09 9.93 16 12 O -0.53 -13.16 16.50 -14.10 -0.23 -13.40 16 13 C 0.05 0.73 5.94 36.00 0.21 0.95 16 14 O -0.33 -5.10 9.75 -45.90 -0.45 -5.55 16 15 C 0.46 5.86 7.96 36.00 0.29 6.15 16 16 O -0.52 -7.08 15.73 -18.75 -0.29 -7.37 16 17 C -0.10 -0.95 5.10 -27.88 -0.14 -1.09 16 18 C -0.13 -0.95 4.99 -27.88 -0.14 -1.09 16 19 C 0.52 4.36 7.82 -10.99 -0.09 4.28 16 20 O -0.54 -6.63 15.65 5.55 0.09 -6.54 16 21 N -0.73 -4.22 5.04 -52.72 -0.27 -4.49 16 22 C 0.14 0.83 3.23 -66.81 -0.22 0.62 16 23 C -0.14 -0.81 6.54 -25.03 -0.16 -0.98 16 24 C -0.13 -0.55 6.91 -24.70 -0.17 -0.72 16 25 C -0.12 -0.45 6.83 -25.07 -0.17 -0.62 16 26 C -0.13 -0.52 6.57 -25.61 -0.17 -0.69 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 31 H 0.10 1.26 8.13 -51.93 -0.42 0.83 16 32 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 33 H 0.12 1.10 8.10 -51.93 -0.42 0.68 16 34 H 0.12 1.11 8.10 -51.94 -0.42 0.69 16 35 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.40 1.30 8.31 -40.82 -0.34 0.96 16 38 H 0.09 0.73 7.58 -51.93 -0.39 0.33 16 39 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 40 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.22 7.61 -51.93 -0.40 -0.17 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -35.50 391.92 -8.49 -44.00 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.33 Total: 1.88 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -1.29 Total: 10.02 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.13 Total: -44.56 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.89 Total: -32.86 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.50 -8.49 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767757545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.655 kcal (2) G-P(sol) polarization free energy of solvation -35.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds