Wall clock time and date at job start Fri Apr 10 2020 18:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00134 * 2 1 4 4 H 1.48502 * 109.46866 * 239.99558 * 3 2 1 5 5 H 1.48494 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47121 * 120.00182 * 3 2 1 7 7 C 1.37878 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99886 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46905 * 179.97438 * 9 7 2 11 11 C 1.34786 * 120.00085 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99739 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00293 * 180.02562 * 11 10 9 14 14 O 1.45198 * 109.47406 * 180.02562 * 13 11 10 15 15 C 1.34230 * 117.00173 * 180.02562 * 14 13 11 16 16 O 1.20827 * 119.99597 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99758 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.46919 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47300 * 179.97438 * 18 17 15 20 20 O 1.21284 * 120.00109 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00137 * 179.97438 * 19 18 17 22 22 C 1.46506 * 119.99873 * 179.97438 * 21 19 18 23 23 C 1.54268 * 110.03351 * 272.90833 * 22 21 19 24 24 C 1.54960 * 104.16081 * 217.13577 * 23 22 21 25 25 C 1.54894 * 102.77798 * 37.89146 * 24 23 22 26 26 C 1.53876 * 110.02735 * 155.69309 * 22 21 19 27 27 H 0.97005 * 120.00024 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47617 * 59.99861 * 9 7 2 29 29 H 1.08998 * 109.47222 * 299.99682 * 9 7 2 30 30 H 0.97000 * 120.00462 * 0.02562 * 10 9 7 31 31 H 1.09003 * 109.47377 * 59.99509 * 13 11 10 32 32 H 1.09003 * 109.47273 * 300.00342 * 13 11 10 33 33 H 1.09000 * 109.47319 * 60.00517 * 17 15 14 34 34 H 1.08987 * 109.47394 * 299.99672 * 17 15 14 35 35 H 1.09004 * 109.46930 * 60.00101 * 18 17 15 36 36 H 1.09000 * 109.47312 * 300.00045 * 18 17 15 37 37 H 0.96995 * 120.00018 * 0.27749 * 21 19 18 38 38 H 1.08996 * 110.01518 * 34.30257 * 22 21 19 39 39 H 1.09004 * 110.48628 * 335.78894 * 23 22 21 40 40 H 1.09007 * 110.48293 * 98.42755 * 23 22 21 41 41 H 1.08999 * 110.72063 * 279.58023 * 24 23 22 42 42 H 1.09000 * 110.91947 * 156.29644 * 24 23 22 43 43 H 1.09000 * 110.48739 * 203.40857 * 25 24 23 44 44 H 1.09000 * 110.59948 * 80.80998 * 25 24 23 45 45 H 1.08997 * 110.03107 * 238.56635 * 26 22 21 46 46 H 1.08992 * 110.03504 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2028 -3.6127 0.0005 11 6 1.7535 -4.8835 0.0011 12 8 0.5611 -5.1050 0.0011 13 6 2.7327 -6.0289 0.0016 14 8 2.0067 -7.2864 0.0015 15 6 2.7377 -8.4121 0.0025 16 8 3.9443 -8.3489 0.0030 17 6 2.0534 -9.7548 0.0031 18 6 3.1071 -10.8642 0.0036 19 6 2.4230 -12.2068 0.0047 20 8 1.2118 -12.2703 0.0046 21 7 3.1569 -13.3372 0.0048 22 6 2.4917 -14.6425 0.0065 23 6 2.1878 -15.0789 1.4546 24 6 2.4274 -16.6098 1.4475 25 6 3.6578 -16.7597 0.5185 26 6 3.4257 -15.7108 -0.5888 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8903 30 1 3.1565 -3.4356 0.0009 31 1 3.3594 -5.9708 0.8916 32 1 3.3595 -5.9716 -0.8883 33 1 1.4311 -9.8458 -0.8872 34 1 1.4304 -9.8447 0.8927 35 1 3.7299 -10.7733 0.8936 36 1 3.7300 -10.7741 -0.8864 37 1 4.1256 -13.2865 0.0082 38 1 1.5680 -14.5912 -0.5697 39 1 2.8685 -14.5896 2.1513 40 1 1.1522 -14.8553 1.7110 41 1 1.5653 -17.1332 1.0341 42 1 2.6539 -16.9730 2.4499 43 1 3.6943 -17.7623 0.0925 44 1 4.5774 -16.5432 1.0621 45 1 2.9548 -16.1786 -1.4533 46 1 4.3740 -15.2581 -0.8785 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767757545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:57 Heat of formation + Delta-G solvation = -208.354150 kcal Electronic energy + Delta-G solvation = -26088.312801 eV Core-core repulsion = 21976.020153 eV Total energy + Delta-G solvation = -4112.292648 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.81867 -40.98927 -40.35088 -38.72113 -37.62514 -36.18520 -34.69724 -34.42028 -34.03682 -30.89663 -29.64611 -29.15667 -28.41825 -26.38468 -24.57688 -22.34206 -21.65244 -21.60225 -21.30904 -21.07110 -19.29454 -19.06775 -18.11103 -18.02734 -17.66151 -17.28368 -16.96145 -16.78588 -16.68533 -16.18062 -16.06720 -15.76226 -15.33718 -14.85070 -14.65691 -14.40528 -14.25057 -14.07040 -14.02595 -13.77592 -13.53834 -13.13973 -12.95475 -12.94716 -12.67829 -12.47510 -12.27324 -12.23902 -12.01747 -11.95562 -11.88523 -11.75512 -11.69883 -11.52301 -11.48208 -10.94134 -10.90094 -10.80421 -10.05674 -9.93218 -8.29118 -6.46139 1.07232 1.22789 1.44990 1.48353 1.55734 1.56862 1.60366 2.18357 2.37065 2.62585 3.06084 3.45928 3.60532 3.67779 3.70742 3.87053 3.96944 4.01626 4.04013 4.09101 4.10689 4.47067 4.52561 4.55205 4.57927 4.63838 4.75446 4.78129 4.87931 4.91951 5.04862 5.07291 5.16971 5.21603 5.23413 5.28167 5.28559 5.41907 5.45491 5.61699 5.63298 5.82048 6.53050 6.57177 6.63018 6.78882 7.20851 7.24857 7.36427 8.82784 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.053570 B = 0.001435 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.557120 B =19508.354549 C =19801.468418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.497 3.503 12 O -0.586 6.586 13 C 0.061 3.939 14 O -0.352 6.352 15 C 0.470 3.530 16 O -0.523 6.523 17 C -0.095 4.095 18 C -0.120 4.120 19 C 0.515 3.485 20 O -0.582 6.582 21 N -0.712 5.712 22 C 0.135 3.865 23 C -0.136 4.136 24 C -0.124 4.124 25 C -0.120 4.120 26 C -0.126 4.126 27 H 0.269 0.731 28 H -0.008 1.008 29 H -0.008 1.008 30 H 0.413 0.587 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.417 0.583 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.803 -33.702 0.521 36.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.283 3.717 12 O -0.467 6.467 13 C -0.016 4.016 14 O -0.268 6.268 15 C 0.314 3.686 16 O -0.412 6.412 17 C -0.133 4.133 18 C -0.159 4.159 19 C 0.303 3.697 20 O -0.462 6.462 21 N -0.364 5.364 22 C 0.030 3.970 23 C -0.175 4.175 24 C -0.161 4.161 25 C -0.158 4.158 26 C -0.164 4.164 27 H 0.078 0.922 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.249 0.751 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.254 0.746 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.316 -33.732 0.504 36.269 hybrid contribution 0.433 1.289 0.038 1.360 sum 13.750 -32.443 0.542 35.241 Atomic orbital electron populations 1.70132 1.08296 1.28686 1.49769 1.26059 0.95752 1.03894 0.93782 0.85193 0.77879 0.76552 0.79509 1.18628 1.21203 1.18646 1.21587 0.94450 0.90371 1.53201 0.89505 1.18628 0.88621 0.83883 0.94548 1.46036 1.11703 1.04709 1.72521 1.20791 0.89363 0.84832 0.76739 1.90694 1.19099 1.85346 1.51513 1.22746 0.92421 0.79123 1.07293 1.86577 1.41690 1.14785 1.83710 1.24116 0.86324 0.86773 0.71392 1.90652 1.15799 1.88114 1.46623 1.21089 0.99113 0.85328 1.07774 1.21407 0.98033 0.88722 1.07781 1.20820 0.87216 0.86919 0.74785 1.90737 1.15946 1.88248 1.51228 1.46101 1.10917 1.04904 1.74526 1.21694 0.96448 0.82223 0.96621 1.22782 1.01153 0.97173 0.96356 1.22493 0.98674 0.94390 1.00585 1.22358 0.98169 0.99165 0.96110 1.22417 0.99648 0.95446 0.98868 0.92220 0.99042 0.99039 0.75062 0.85585 0.85584 0.86661 0.86711 0.86180 0.86099 0.74554 0.91385 0.91020 0.93073 0.91393 0.90701 0.90453 0.90654 0.90439 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.99 41.77 29.54 68.60 2.03 43.80 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 7 C -0.56 -29.87 9.28 25.60 0.24 -29.63 16 8 H 0.09 4.14 7.60 -2.91 -0.02 4.11 16 9 C 0.27 14.42 5.43 85.63 0.46 14.88 16 10 N -0.70 -28.79 5.55 -466.79 -2.59 -31.38 16 11 C 0.50 20.01 7.91 87.65 0.69 20.70 16 12 O -0.59 -29.99 16.50 15.77 0.26 -29.73 16 13 C 0.06 1.71 5.94 71.23 0.42 2.13 16 14 O -0.35 -10.62 9.75 -45.06 -0.44 -11.06 16 15 C 0.47 11.06 7.96 71.23 0.57 11.63 16 16 O -0.52 -12.83 15.73 21.96 0.35 -12.49 16 17 C -0.10 -1.74 5.10 29.85 0.15 -1.59 16 18 C -0.12 -1.52 4.99 29.85 0.15 -1.37 16 19 C 0.52 8.31 7.82 87.66 0.69 8.99 16 20 O -0.58 -14.72 15.65 -3.04 -0.05 -14.77 16 21 N -0.71 -7.31 5.04 -439.09 -2.21 -9.52 16 22 C 0.13 1.55 3.23 45.72 0.15 1.70 16 23 C -0.14 -1.61 6.54 31.69 0.21 -1.40 16 24 C -0.12 -0.97 6.91 31.91 0.22 -0.75 16 25 C -0.12 -0.62 6.83 31.67 0.22 -0.40 16 26 C -0.13 -0.76 6.57 31.32 0.21 -0.56 16 27 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H 0.41 13.54 8.32 -92.71 -0.77 12.77 16 31 H 0.13 2.86 8.13 -2.39 -0.02 2.84 16 32 H 0.13 2.86 8.13 -2.39 -0.02 2.84 16 33 H 0.12 2.16 8.10 -2.39 -0.02 2.14 16 34 H 0.11 2.16 8.10 -2.39 -0.02 2.14 16 35 H 0.12 1.19 8.10 -2.38 -0.02 1.17 16 36 H 0.12 1.18 8.10 -2.39 -0.02 1.16 16 37 H 0.42 1.66 8.31 -92.71 -0.77 0.89 16 38 H 0.07 1.13 7.58 -2.39 -0.02 1.11 16 39 H 0.07 0.82 8.05 -2.39 -0.02 0.80 16 40 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.09 0.29 7.61 -2.39 -0.02 0.27 16 Total: -1.00 -80.14 391.92 1.92 -78.22 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -0.54 Total: 17.38 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 4.83 Total: 25.06 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -4.52 Total: -96.41 kcal Atomic # 8 Polarization: -68.16 SS G_CDS: 0.12 Total: -68.05 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -80.14 1.92 -78.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767757545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.134 kcal (2) G-P(sol) polarization free energy of solvation -80.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds