Wall clock time and date at job start Fri Apr 10 2020 18:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 120.00328 * 2 1 4 4 C 1.50705 * 120.00296 * 179.97438 * 2 1 3 5 5 O 1.42905 * 109.46632 * 0.02562 * 4 2 1 6 6 C 1.42900 * 113.99628 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47296 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46793 * 64.99330 * 7 6 5 9 9 C 1.34781 * 119.99408 * 180.02562 * 8 7 6 10 10 O 1.21344 * 120.00245 * 0.02562 * 9 8 7 11 11 C 1.49454 * 119.99627 * 180.02562 * 9 8 7 12 12 O 1.21350 * 119.99764 * 359.97438 * 11 9 8 13 13 N 1.34771 * 119.99679 * 180.02562 * 11 9 8 14 14 C 1.47024 * 125.65291 * 359.68326 * 13 11 9 15 15 C 1.54332 * 107.26564 * 178.85350 * 14 13 11 16 16 C 1.55150 * 103.02235 * 338.14350 * 15 14 13 17 17 O 1.42909 * 111.00569 * 277.23243 * 16 15 14 18 18 C 1.50698 * 111.03623 * 153.39687 * 16 15 14 19 19 H 1.07997 * 120.00332 * 272.60990 * 18 16 15 20 20 C 1.37878 * 120.00169 * 92.60971 * 18 16 15 21 21 N 1.31517 * 120.00385 * 173.51866 * 20 18 16 22 22 Si 1.86800 * 119.99748 * 353.51903 * 20 18 16 23 23 H 1.48503 * 109.47298 * 87.32285 * 22 20 18 24 24 H 1.48500 * 109.46998 * 207.32060 * 22 20 18 25 25 H 1.48498 * 109.47320 * 327.32249 * 22 20 18 26 26 C 1.47425 * 125.64946 * 180.02562 * 13 11 9 27 27 H 1.07996 * 119.99994 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99974 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47261 * 270.00390 * 3 2 1 30 30 H 1.09010 * 109.46636 * 29.99355 * 3 2 1 31 31 H 1.08988 * 109.47511 * 149.99636 * 3 2 1 32 32 H 1.08996 * 109.47469 * 240.00472 * 4 2 1 33 33 H 1.08993 * 109.47131 * 119.99905 * 4 2 1 34 34 H 1.08998 * 109.47237 * 299.99615 * 6 5 4 35 35 H 1.09001 * 109.47529 * 59.99591 * 6 5 4 36 36 H 1.08989 * 109.47648 * 184.99882 * 7 6 5 37 37 H 1.09004 * 109.46563 * 304.99857 * 7 6 5 38 38 H 0.96996 * 119.99961 * 0.02562 * 8 7 6 39 39 H 1.09001 * 109.88505 * 298.40260 * 14 13 11 40 40 H 1.09004 * 109.88000 * 59.56359 * 14 13 11 41 41 H 1.09008 * 110.84507 * 219.67417 * 15 14 13 42 42 H 1.08998 * 110.51537 * 96.45712 * 15 14 13 43 43 H 0.96694 * 113.99833 * 168.40191 * 17 16 15 44 44 H 0.96998 * 120.00086 * 179.97438 * 21 20 18 45 45 H 1.09011 * 110.36320 * 322.92932 * 26 13 11 46 46 H 1.09007 * 110.36699 * 85.13527 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.7495 -3.6814 0.0016 7 6 0.6666 -4.7622 0.0007 8 7 -0.0901 -4.6943 -1.2520 9 6 -1.1016 -5.5565 -1.4758 10 8 -1.3858 -6.3886 -0.6396 11 6 -1.8731 -5.4876 -2.7539 12 8 -1.5892 -4.6551 -3.5899 13 7 -2.8849 -6.3494 -2.9774 14 6 -3.3296 -7.4062 -2.0571 15 6 -4.5287 -8.1164 -2.7203 16 6 -5.0464 -7.0587 -3.7304 17 8 -5.9013 -6.1113 -3.0871 18 6 -5.7497 -7.7166 -4.8896 19 1 -5.1847 -8.0378 -5.7521 20 6 -7.1145 -7.9084 -4.8490 21 7 -7.7463 -8.3644 -5.9085 22 14 -8.0661 -7.5207 -3.2890 23 1 -8.4603 -6.0889 -3.2926 24 1 -9.2834 -8.3690 -3.2280 25 1 -7.2112 -7.7957 -2.1064 26 6 -3.7245 -6.3932 -4.1884 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.2452 1.6198 -1.0276 30 1 1.4743 2.0648 0.5138 31 1 3.0158 1.1748 0.5138 32 1 2.6902 -1.3625 0.8906 33 1 2.6902 -1.3632 -0.8893 34 1 2.3702 -3.7889 -0.8879 35 1 2.3691 -3.7880 0.8920 36 1 1.1324 -5.7434 0.0911 37 1 -0.0079 -4.6014 0.8418 38 1 0.1369 -4.0289 -1.9202 39 1 -2.5207 -8.1175 -1.8907 40 1 -3.6397 -6.9660 -1.1093 41 1 -5.2956 -8.3532 -1.9827 42 1 -4.2000 -9.0168 -3.2392 43 1 -6.1066 -5.3363 -3.6277 44 1 -8.7064 -8.4997 -5.8798 45 1 -3.9148 -5.3843 -4.5548 46 1 -3.2439 -6.9925 -4.9618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328314874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:45 Heat of formation + Delta-G solvation = -136.185681 kcal Electronic energy + Delta-G solvation = -27919.003463 eV Core-core repulsion = 23809.840274 eV Total energy + Delta-G solvation = -4109.163188 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54023 -39.08476 -38.50617 -37.50732 -35.87914 -34.97487 -34.30284 -32.38079 -30.44887 -30.10604 -28.44997 -27.53798 -26.69009 -25.99446 -24.11903 -22.71903 -21.68176 -20.02842 -19.72683 -18.95508 -17.71183 -17.44149 -17.14880 -16.93566 -16.32661 -15.95886 -15.77953 -15.36877 -15.17594 -14.88663 -14.56225 -14.39536 -13.96144 -13.74547 -13.53926 -13.32473 -13.20925 -12.88323 -12.68314 -12.57837 -12.50554 -12.08462 -12.00856 -11.73777 -11.56807 -11.53890 -11.37477 -11.24338 -10.97514 -10.48393 -10.35089 -10.27881 -10.23602 -9.34798 -9.31692 -9.28752 -9.24107 -8.69430 -8.53594 -8.21239 -6.20071 -4.32508 1.63073 1.93150 2.46488 3.08515 3.42456 3.47035 3.53693 3.68997 3.72988 4.35595 4.50048 4.52339 4.58514 4.69890 4.80169 4.85937 4.92726 4.97120 5.02029 5.11609 5.15093 5.24427 5.27797 5.39578 5.46860 5.55708 5.72647 5.76633 5.77063 6.00149 6.06152 6.19623 6.31677 6.36477 6.40544 6.47107 6.65697 6.78122 6.81857 7.03781 7.11064 7.43030 7.66297 7.83827 8.11027 8.21829 8.60087 8.79787 9.41186 10.88493 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.002443 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.138852 B =11458.051288 C =11991.952469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.113 4.113 4 C 0.100 3.900 5 O -0.382 6.382 6 C 0.050 3.950 7 C 0.122 3.878 8 N -0.702 5.702 9 C 0.510 3.490 10 O -0.515 6.515 11 C 0.512 3.488 12 O -0.537 6.537 13 N -0.576 5.576 14 C 0.108 3.892 15 C -0.125 4.125 16 C 0.220 3.780 17 O -0.558 6.558 18 C -0.552 4.552 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.887 5.887 22 Si 0.950 3.050 23 H -0.293 1.293 24 H -0.326 1.326 25 H -0.268 1.268 26 C 0.087 3.913 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.415 0.585 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.371 0.629 44 H 0.267 0.733 45 H 0.075 0.925 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.878 12.595 12.968 27.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.170 4.170 4 C 0.024 3.976 5 O -0.301 6.301 6 C -0.027 4.027 7 C -0.001 4.001 8 N -0.357 5.357 9 C 0.291 3.709 10 O -0.390 6.390 11 C 0.295 3.705 12 O -0.416 6.416 13 N -0.308 5.308 14 C -0.015 4.015 15 C -0.164 4.164 16 C 0.179 3.821 17 O -0.366 6.366 18 C -0.590 4.590 19 H 0.100 0.900 20 C -0.130 4.130 21 N -0.521 5.521 22 Si 0.786 3.214 23 H -0.220 1.220 24 H -0.258 1.258 25 H -0.194 1.194 26 C -0.035 4.035 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.251 0.749 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.219 0.781 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.577 12.003 13.542 27.402 hybrid contribution -0.132 0.833 -0.051 0.845 sum 20.445 12.836 13.490 27.654 Atomic orbital electron populations 1.23787 0.95443 1.02493 0.98370 1.21546 0.95925 0.94128 1.03645 1.20745 0.99976 0.93952 1.02283 1.21235 0.91036 0.84949 1.00430 1.87924 1.33229 1.13454 1.95510 1.22775 0.95232 0.83025 1.01652 1.21458 0.93656 0.97828 0.87169 1.45649 1.33322 1.35942 1.20740 1.20255 0.81088 0.81722 0.87815 1.90749 1.66369 1.35763 1.46161 1.19600 0.81498 0.82183 0.87264 1.90730 1.67659 1.36604 1.46620 1.48457 1.30142 1.31429 1.20756 1.22277 0.97320 0.89028 0.92831 1.23073 0.95476 0.98663 0.99153 1.20269 0.85215 0.85764 0.90841 1.86141 1.68306 1.34624 1.47487 1.21072 0.93346 1.41858 1.02676 0.89993 1.25110 0.97767 0.93047 0.97098 1.69964 1.09548 1.43620 1.29005 0.85657 0.76213 0.76552 0.83021 1.22045 1.25752 1.19407 1.23334 0.92229 1.02027 0.85903 0.88556 0.87066 0.91368 0.91466 0.91987 0.92304 0.92204 0.92180 0.91220 0.89389 0.90080 0.74895 0.91391 0.91000 0.89938 0.89566 0.78090 0.92364 0.90641 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 13.66 29.02 0.40 -1.10 16 2 C -0.15 -1.21 6.05 -101.06 -0.61 -1.82 16 3 C -0.11 -0.64 10.03 36.01 0.36 -0.28 16 4 C 0.10 0.71 6.34 36.01 0.23 0.94 16 5 O -0.38 -3.40 8.68 -35.23 -0.31 -3.71 16 6 C 0.05 0.33 6.07 37.16 0.23 0.56 16 7 C 0.12 1.10 6.06 -4.04 -0.02 1.07 16 8 N -0.70 -8.40 5.50 -60.73 -0.33 -8.74 16 9 C 0.51 7.93 7.86 -11.58 -0.09 7.84 16 10 O -0.52 -8.77 14.12 5.50 0.08 -8.69 16 11 C 0.51 9.20 7.91 -11.59 -0.09 9.11 16 12 O -0.54 -10.41 16.73 5.50 0.09 -10.32 16 13 N -0.58 -10.82 3.33 -171.00 -0.57 -11.38 16 14 C 0.11 1.95 5.49 -3.06 -0.02 1.93 16 15 C -0.13 -2.51 5.90 -24.90 -0.15 -2.65 16 16 C 0.22 4.83 0.70 -89.62 -0.06 4.76 16 17 O -0.56 -12.19 8.52 -35.23 -0.30 -12.49 16 18 C -0.55 -14.40 8.89 -34.44 -0.31 -14.71 16 19 H 0.08 2.31 8.00 -52.49 -0.42 1.89 16 20 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 21 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 22 Si 0.95 23.32 24.93 -169.99 -4.24 19.08 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.33 -8.22 7.11 56.52 0.40 -7.82 16 25 H -0.27 -6.47 5.42 56.52 0.31 -6.16 16 26 C 0.09 1.73 6.07 -2.52 -0.02 1.72 16 27 H 0.10 0.76 8.04 -52.49 -0.42 0.34 16 28 H 0.11 1.19 6.84 -52.48 -0.36 0.84 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.35 8.06 -51.92 -0.42 -0.06 16 31 H 0.06 0.28 8.12 -51.94 -0.42 -0.14 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.71 8.14 -51.94 -0.42 0.28 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.41 4.78 7.94 -40.82 -0.32 4.45 16 39 H 0.07 1.14 7.71 -51.93 -0.40 0.74 16 40 H 0.07 1.33 7.57 -51.93 -0.39 0.94 16 41 H 0.08 1.70 6.65 -51.92 -0.35 1.35 16 42 H 0.09 1.66 8.03 -51.93 -0.42 1.25 16 43 H 0.37 7.19 8.99 45.56 0.41 7.60 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.08 1.50 8.02 -51.92 -0.42 1.08 16 46 H 0.08 1.59 7.99 -51.93 -0.41 1.18 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -32.44 379.15 -5.87 -38.31 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.53 Total: 8.14 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -0.25 Total: 9.34 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.13 Total: -45.37 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.44 Total: -35.21 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.24 Total: 19.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.44 -5.87 -38.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328314874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.876 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds