Wall clock time and date at job start Fri Apr 10 2020 18:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 120.00328 * 2 1 4 4 C 1.50705 * 120.00296 * 179.97438 * 2 1 3 5 5 O 1.42905 * 109.46632 * 0.02562 * 4 2 1 6 6 C 1.42900 * 113.99628 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47296 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46793 * 64.99330 * 7 6 5 9 9 C 1.34781 * 119.99408 * 180.02562 * 8 7 6 10 10 O 1.21344 * 120.00245 * 0.02562 * 9 8 7 11 11 C 1.49454 * 119.99627 * 180.02562 * 9 8 7 12 12 O 1.21350 * 119.99764 * 359.97438 * 11 9 8 13 13 N 1.34771 * 119.99679 * 180.02562 * 11 9 8 14 14 C 1.47024 * 125.65291 * 359.68326 * 13 11 9 15 15 C 1.54332 * 107.26564 * 178.85350 * 14 13 11 16 16 C 1.55150 * 103.02235 * 338.14350 * 15 14 13 17 17 O 1.42909 * 111.00569 * 277.23243 * 16 15 14 18 18 C 1.50698 * 111.03623 * 153.39687 * 16 15 14 19 19 H 1.07997 * 120.00332 * 272.60990 * 18 16 15 20 20 C 1.37878 * 120.00169 * 92.60971 * 18 16 15 21 21 N 1.31517 * 120.00385 * 173.51866 * 20 18 16 22 22 Si 1.86800 * 119.99748 * 353.51903 * 20 18 16 23 23 H 1.48503 * 109.47298 * 87.32285 * 22 20 18 24 24 H 1.48500 * 109.46998 * 207.32060 * 22 20 18 25 25 H 1.48498 * 109.47320 * 327.32249 * 22 20 18 26 26 C 1.47425 * 125.64946 * 180.02562 * 13 11 9 27 27 H 1.07996 * 119.99994 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99974 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47261 * 270.00390 * 3 2 1 30 30 H 1.09010 * 109.46636 * 29.99355 * 3 2 1 31 31 H 1.08988 * 109.47511 * 149.99636 * 3 2 1 32 32 H 1.08996 * 109.47469 * 240.00472 * 4 2 1 33 33 H 1.08993 * 109.47131 * 119.99905 * 4 2 1 34 34 H 1.08998 * 109.47237 * 299.99615 * 6 5 4 35 35 H 1.09001 * 109.47529 * 59.99591 * 6 5 4 36 36 H 1.08989 * 109.47648 * 184.99882 * 7 6 5 37 37 H 1.09004 * 109.46563 * 304.99857 * 7 6 5 38 38 H 0.96996 * 119.99961 * 0.02562 * 8 7 6 39 39 H 1.09001 * 109.88505 * 298.40260 * 14 13 11 40 40 H 1.09004 * 109.88000 * 59.56359 * 14 13 11 41 41 H 1.09008 * 110.84507 * 219.67417 * 15 14 13 42 42 H 1.08998 * 110.51537 * 96.45712 * 15 14 13 43 43 H 0.96694 * 113.99833 * 168.40191 * 17 16 15 44 44 H 0.96998 * 120.00086 * 179.97438 * 21 20 18 45 45 H 1.09011 * 110.36320 * 322.92932 * 26 13 11 46 46 H 1.09007 * 110.36699 * 85.13527 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.7495 -3.6814 0.0016 7 6 0.6666 -4.7622 0.0007 8 7 -0.0901 -4.6943 -1.2520 9 6 -1.1016 -5.5565 -1.4758 10 8 -1.3858 -6.3886 -0.6396 11 6 -1.8731 -5.4876 -2.7539 12 8 -1.5892 -4.6551 -3.5899 13 7 -2.8849 -6.3494 -2.9774 14 6 -3.3296 -7.4062 -2.0571 15 6 -4.5287 -8.1164 -2.7203 16 6 -5.0464 -7.0587 -3.7304 17 8 -5.9013 -6.1113 -3.0871 18 6 -5.7497 -7.7166 -4.8896 19 1 -5.1847 -8.0378 -5.7521 20 6 -7.1145 -7.9084 -4.8490 21 7 -7.7463 -8.3644 -5.9085 22 14 -8.0661 -7.5207 -3.2890 23 1 -8.4603 -6.0889 -3.2926 24 1 -9.2834 -8.3690 -3.2280 25 1 -7.2112 -7.7957 -2.1064 26 6 -3.7245 -6.3932 -4.1884 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.2452 1.6198 -1.0276 30 1 1.4743 2.0648 0.5138 31 1 3.0158 1.1748 0.5138 32 1 2.6902 -1.3625 0.8906 33 1 2.6902 -1.3632 -0.8893 34 1 2.3702 -3.7889 -0.8879 35 1 2.3691 -3.7880 0.8920 36 1 1.1324 -5.7434 0.0911 37 1 -0.0079 -4.6014 0.8418 38 1 0.1369 -4.0289 -1.9202 39 1 -2.5207 -8.1175 -1.8907 40 1 -3.6397 -6.9660 -1.1093 41 1 -5.2956 -8.3532 -1.9827 42 1 -4.2000 -9.0168 -3.2392 43 1 -6.1066 -5.3363 -3.6277 44 1 -8.7064 -8.4997 -5.8798 45 1 -3.9148 -5.3843 -4.5548 46 1 -3.2439 -6.9925 -4.9618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328314874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:44 Heat of formation + Delta-G solvation = -161.976112 kcal Electronic energy + Delta-G solvation = -27920.121820 eV Core-core repulsion = 23809.840274 eV Total energy + Delta-G solvation = -4110.281545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.87425 -40.27505 -39.37236 -39.00061 -36.84300 -36.26228 -35.26567 -34.46182 -32.09089 -30.89138 -30.08198 -28.09233 -27.80519 -27.13656 -25.48292 -23.90621 -22.81597 -21.65794 -21.09753 -19.59989 -19.47929 -18.84584 -18.12662 -17.75678 -17.36332 -17.23845 -17.08074 -16.66895 -16.39238 -16.31064 -15.92330 -15.55165 -15.21149 -14.88241 -14.54932 -14.49231 -14.19648 -14.12958 -13.90368 -13.74097 -13.70120 -13.34194 -13.29839 -13.09435 -12.81041 -12.63440 -12.61128 -12.31227 -12.21140 -12.11131 -12.00191 -11.94978 -11.24714 -10.84834 -10.67947 -10.60611 -10.44013 -10.33584 -9.87484 -9.75784 -8.34008 -6.47371 0.31496 1.22506 1.31086 1.50683 1.54360 1.75336 2.09394 2.41841 2.46403 2.58939 2.96812 3.29004 3.47933 3.78562 3.79881 4.00475 4.01539 4.15674 4.24480 4.24668 4.37175 4.40963 4.45760 4.51754 4.58259 4.64142 4.70479 4.76460 4.79769 4.86223 4.91278 5.05012 5.10879 5.15145 5.15528 5.19221 5.31687 5.50627 5.68119 5.82713 5.96534 6.05255 6.26468 6.29277 6.56956 6.60574 6.89453 6.90712 7.30390 8.78412 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.002443 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.138852 B =11458.051288 C =11991.952469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.146 4.146 3 C -0.113 4.113 4 C 0.094 3.906 5 O -0.408 6.408 6 C 0.053 3.947 7 C 0.118 3.882 8 N -0.685 5.685 9 C 0.514 3.486 10 O -0.532 6.532 11 C 0.510 3.490 12 O -0.554 6.554 13 N -0.581 5.581 14 C 0.120 3.880 15 C -0.123 4.123 16 C 0.216 3.784 17 O -0.560 6.560 18 C -0.545 4.545 19 H 0.051 0.949 20 C 0.028 3.972 21 N -0.933 5.933 22 Si 1.006 2.994 23 H -0.286 1.286 24 H -0.337 1.337 25 H -0.259 1.259 26 C 0.095 3.905 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.418 0.582 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.381 0.619 44 H 0.267 0.733 45 H 0.074 0.926 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.292 13.643 15.032 30.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.147 4.147 3 C -0.169 4.169 4 C 0.018 3.982 5 O -0.328 6.328 6 C -0.023 4.023 7 C -0.004 4.004 8 N -0.339 5.339 9 C 0.294 3.706 10 O -0.409 6.409 11 C 0.293 3.707 12 O -0.434 6.434 13 N -0.313 5.313 14 C -0.002 4.002 15 C -0.161 4.161 16 C 0.176 3.824 17 O -0.369 6.369 18 C -0.582 4.582 19 H 0.069 0.931 20 C -0.172 4.172 21 N -0.571 5.571 22 Si 0.840 3.160 23 H -0.213 1.213 24 H -0.269 1.269 25 H -0.185 1.185 26 C -0.027 4.027 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.254 0.746 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.231 0.769 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 23.043 13.088 15.624 30.763 hybrid contribution -0.750 0.559 -0.743 1.195 sum 22.293 13.647 14.881 30.077 Atomic orbital electron populations 1.23717 0.96205 1.01780 1.01215 1.21939 0.95773 0.95679 1.01262 1.20793 1.00450 0.92767 1.02920 1.21415 0.90861 0.84003 1.01928 1.87902 1.34589 1.14511 1.95779 1.22856 0.94384 0.81461 1.03634 1.21725 0.93833 0.99722 0.85108 1.45707 1.32001 1.34481 1.21703 1.19785 0.81754 0.82469 0.86630 1.90743 1.67153 1.36765 1.46219 1.20123 0.81145 0.81364 0.88057 1.90717 1.68061 1.37121 1.47488 1.48453 1.30496 1.32055 1.20330 1.22182 0.96910 0.88905 0.92182 1.23002 0.96226 0.98311 0.98585 1.20152 0.85616 0.86348 0.90318 1.86097 1.68276 1.34978 1.47592 1.21276 0.93162 1.40867 1.02944 0.93111 1.25806 0.98855 0.93280 0.99288 1.70071 1.09864 1.46162 1.30973 0.84746 0.74688 0.76365 0.80224 1.21282 1.26922 1.18451 1.23029 0.91568 1.01637 0.86464 0.88079 0.89206 0.90791 0.91222 0.90365 0.90368 0.90889 0.90762 0.88515 0.87869 0.90979 0.74552 0.89655 0.90975 0.90177 0.89200 0.76937 0.92379 0.90732 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.47 13.66 67.78 0.93 -2.54 16 2 C -0.15 -2.09 6.05 -16.48 -0.10 -2.19 16 3 C -0.11 -1.03 10.03 71.24 0.71 -0.32 16 4 C 0.09 1.10 6.34 71.24 0.45 1.55 16 5 O -0.41 -6.45 8.68 -148.98 -1.29 -7.74 16 6 C 0.05 0.55 6.07 71.98 0.44 0.98 16 7 C 0.12 1.83 6.06 86.38 0.52 2.36 16 8 N -0.69 -15.10 5.50 -464.40 -2.55 -17.65 16 9 C 0.51 15.07 7.86 87.27 0.69 15.76 16 10 O -0.53 -17.03 14.12 -3.23 -0.05 -17.07 16 11 C 0.51 17.63 7.91 87.27 0.69 18.32 16 12 O -0.55 -20.92 16.73 -3.25 -0.05 -20.97 16 13 N -0.58 -21.06 3.33 -813.29 -2.70 -23.76 16 14 C 0.12 4.12 5.49 86.73 0.48 4.60 16 15 C -0.12 -4.75 5.90 31.78 0.19 -4.56 16 16 C 0.22 9.35 0.70 -10.15 -0.01 9.34 16 17 O -0.56 -23.63 8.52 -148.98 -1.27 -24.90 16 18 C -0.54 -28.71 8.89 25.60 0.23 -28.48 16 19 H 0.05 2.95 8.00 -2.91 -0.02 2.92 16 20 C 0.03 1.55 5.46 84.65 0.46 2.02 16 21 N -0.93 -55.98 13.96 21.45 0.30 -55.68 16 22 Si 1.01 47.89 24.93 68.60 1.71 49.60 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.34 -16.55 7.11 99.48 0.71 -15.84 16 25 H -0.26 -11.84 5.42 99.48 0.54 -11.31 16 26 C 0.10 3.75 6.07 86.86 0.53 4.28 16 27 H 0.10 1.61 8.04 -2.91 -0.02 1.59 16 28 H 0.09 1.99 6.84 -2.91 -0.02 1.97 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.61 8.06 -2.38 -0.02 0.59 16 31 H 0.08 0.47 8.12 -2.39 -0.02 0.45 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.42 8.88 7.94 -92.71 -0.74 8.14 16 39 H 0.09 2.66 7.71 -2.39 -0.02 2.64 16 40 H 0.07 2.51 7.57 -2.38 -0.02 2.49 16 41 H 0.08 3.14 6.65 -2.38 -0.02 3.12 16 42 H 0.09 3.37 8.03 -2.39 -0.02 3.35 16 43 H 0.38 14.25 8.99 -74.06 -0.67 13.59 16 44 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.07 2.93 8.02 -2.38 -0.02 2.91 16 46 H 0.08 3.04 7.99 -2.38 -0.02 3.02 16 Total: -1.00 -69.63 379.15 -0.28 -69.90 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.57 Total: 27.17 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 6.20 Total: 21.11 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -4.96 Total: -97.10 kcal Atomic # 8 Polarization: -68.03 SS G_CDS: -2.66 Total: -70.69 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.71 Total: 49.60 kcal Total: -69.63 -0.28 -69.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328314874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.071 kcal (2) G-P(sol) polarization free energy of solvation -69.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds