Wall clock time and date at job start Fri Apr 10 2020 18:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46999 * 2 1 4 4 O 1.42895 * 110.92109 * 303.90125 * 3 2 1 5 5 C 1.55164 * 111.00157 * 180.02562 * 3 2 1 6 6 C 1.54324 * 102.94085 * 206.42511 * 5 3 2 7 7 N 1.47019 * 107.27386 * 22.19469 * 6 5 3 8 8 C 1.34771 * 125.65301 * 181.01959 * 7 6 5 9 9 O 1.21347 * 120.00595 * 180.02562 * 8 7 6 10 10 C 1.49451 * 119.99908 * 0.02704 * 8 7 6 11 11 O 1.21358 * 119.99940 * 359.97438 * 10 8 7 12 12 N 1.34781 * 120.00442 * 179.97438 * 10 8 7 13 13 C 1.47427 * 125.64049 * 359.97438 * 12 10 8 14 14 C 1.54914 * 104.82738 * 155.91589 * 13 12 10 15 15 C 1.55163 * 101.58277 * 37.00550 * 14 13 12 16 16 O 1.42901 * 110.71571 * 83.03771 * 15 14 13 17 17 C 1.50701 * 110.72006 * 206.13406 * 15 14 13 18 18 H 1.08006 * 119.99828 * 357.27079 * 17 15 14 19 19 C 1.37869 * 119.99948 * 177.27218 * 17 15 14 20 20 N 1.31522 * 120.00061 * 353.79251 * 19 17 15 21 21 Si 1.86799 * 120.00173 * 173.79616 * 19 17 15 22 22 H 1.48501 * 109.47481 * 84.97518 * 21 19 17 23 23 H 1.48506 * 109.46781 * 324.97492 * 21 19 17 24 24 H 1.48499 * 109.47166 * 204.98047 * 21 19 17 25 25 C 1.47013 * 125.65159 * 180.02562 * 12 10 8 26 26 C 1.47434 * 108.70065 * 1.28746 * 7 6 5 27 27 H 1.09005 * 109.47143 * 59.99673 * 1 2 3 28 28 H 1.08993 * 109.47241 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46903 * 299.99832 * 1 2 3 30 30 H 1.09005 * 109.47084 * 240.00479 * 2 1 3 31 31 H 1.08999 * 109.47565 * 120.00460 * 2 1 3 32 32 H 0.96707 * 113.99586 * 56.10061 * 4 3 2 33 33 H 1.09003 * 110.71844 * 88.06695 * 5 3 2 34 34 H 1.08996 * 110.71784 * 324.78896 * 5 3 2 35 35 H 1.09001 * 109.88580 * 262.77621 * 6 5 3 36 36 H 1.09000 * 110.00922 * 141.68459 * 6 5 3 37 37 H 1.08991 * 110.37346 * 37.07599 * 13 12 10 38 38 H 1.09001 * 110.45984 * 274.79700 * 13 12 10 39 39 H 1.08996 * 111.00616 * 278.92946 * 14 13 12 40 40 H 1.09000 * 111.03753 * 155.09207 * 14 13 12 41 41 H 0.96706 * 113.99275 * 182.44294 * 16 15 14 42 42 H 0.97003 * 119.99745 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.88075 * 61.59319 * 25 12 10 44 44 H 1.09005 * 109.88454 * 300.43345 * 25 12 10 45 45 H 1.08998 * 110.36684 * 94.48507 * 26 7 6 46 46 H 1.09002 * 110.36721 * 216.80439 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5081 2.1717 -1.1078 5 6 3.5911 1.4840 -0.0006 6 6 3.9008 2.8395 0.6688 7 7 2.7216 3.2137 1.4631 8 6 2.5874 4.3435 2.1856 9 8 1.5650 4.5492 2.8059 10 6 3.6978 5.3431 2.2227 11 8 4.7205 5.1372 1.6027 12 7 3.5635 6.4732 2.9447 13 6 2.3807 6.8485 3.7408 14 6 2.9193 7.8278 4.8135 15 6 3.9906 8.6116 4.0100 16 8 3.3879 9.6705 3.2633 17 6 5.0579 9.1494 4.9280 18 1 4.9776 9.0011 5.9948 19 6 6.1369 9.8307 4.4060 20 7 6.2991 9.9063 3.1030 21 14 7.3684 10.6465 5.5493 22 1 8.3840 9.6503 5.9750 23 1 6.6609 11.1736 6.7439 24 1 8.0391 11.7643 4.8381 25 6 4.5715 7.5362 3.0680 26 6 1.7128 2.1452 1.3437 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.5420 2.1740 -1.1498 33 1 3.9770 1.4600 -1.0198 34 1 3.9990 0.6615 0.5869 35 1 4.0890 3.5952 -0.0939 36 1 4.7707 2.7444 1.3187 37 1 1.9472 5.9679 4.2145 38 1 1.6402 7.3438 3.1127 39 1 3.3724 7.2867 5.6442 40 1 2.1316 8.4932 5.1667 41 1 4.0095 10.1680 2.7144 42 1 7.0585 10.3853 2.7358 43 1 4.7736 7.9708 2.0890 44 1 5.4896 7.1291 3.4918 45 1 1.8030 1.4439 2.1732 46 1 0.7101 2.5718 1.3139 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328428007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:48 Heat of formation + Delta-G solvation = -155.920819 kcal Electronic energy + Delta-G solvation = -29099.718754 eV Core-core repulsion = 24989.699785 eV Total energy + Delta-G solvation = -4110.018968 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71867 -39.44501 -38.04614 -37.19472 -35.73079 -34.24733 -33.17777 -32.24240 -30.82719 -30.13075 -28.60980 -27.85071 -26.09439 -24.97321 -23.28083 -22.41857 -21.49144 -20.56719 -19.61834 -18.90872 -17.41454 -17.19456 -17.01420 -16.45753 -16.14076 -15.59102 -15.32495 -15.06873 -14.82157 -14.37456 -14.28647 -14.01239 -13.67979 -13.26914 -13.05261 -12.98487 -12.91796 -12.88704 -12.61231 -12.28099 -12.12660 -12.07589 -11.74809 -11.64102 -11.55725 -11.39093 -11.07474 -11.03767 -10.83008 -10.66956 -10.55591 -10.50547 -10.32754 -10.16282 -9.29863 -9.03235 -8.74859 -8.70280 -8.33221 -7.95913 -6.30070 -4.38496 1.81380 2.50728 3.20741 3.28069 3.31568 3.59276 3.68635 3.80869 4.09548 4.26329 4.27511 4.35973 4.64010 4.72400 4.88648 4.97618 5.01675 5.07319 5.26693 5.35218 5.43175 5.50508 5.52086 5.58366 5.63434 5.78263 5.81350 5.82539 5.90983 5.95973 6.06397 6.15776 6.32717 6.54042 6.77133 6.85327 6.87183 7.21834 7.23274 7.30771 7.34165 7.71227 7.80904 8.01059 8.06215 8.48292 8.65182 9.27954 9.34160 10.77187 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.028153 B = 0.002789 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.312747 B =10036.597720 C =10491.313972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.140 4.140 3 C 0.116 3.884 4 O -0.544 6.544 5 C -0.122 4.122 6 C 0.112 3.888 7 N -0.592 5.592 8 C 0.525 3.475 9 O -0.521 6.521 10 C 0.509 3.491 11 O -0.532 6.532 12 N -0.576 5.576 13 C 0.099 3.901 14 C -0.120 4.120 15 C 0.247 3.753 16 O -0.582 6.582 17 C -0.538 4.538 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.893 5.893 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.272 1.272 24 H -0.284 1.284 25 C 0.103 3.897 26 C 0.084 3.916 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.376 0.624 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.381 0.619 42 H 0.270 0.730 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 -18.784 -5.952 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.178 4.178 3 C 0.075 3.925 4 O -0.350 6.350 5 C -0.160 4.160 6 C -0.010 4.010 7 N -0.327 5.327 8 C 0.310 3.690 9 O -0.397 6.397 10 C 0.291 3.709 11 O -0.411 6.411 12 N -0.309 5.309 13 C -0.023 4.023 14 C -0.158 4.158 15 C 0.207 3.793 16 O -0.390 6.390 17 C -0.576 4.576 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.197 1.197 24 H -0.210 1.210 25 C -0.018 4.018 26 C -0.039 4.039 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.225 0.775 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.231 0.769 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.589 -18.771 -5.892 21.467 hybrid contribution 0.693 0.534 0.311 0.928 sum -7.896 -18.237 -5.581 20.642 Atomic orbital electron populations 1.21845 0.95279 1.02644 1.02165 1.22042 0.96725 0.95443 1.03581 1.22369 0.94564 0.90285 0.85317 1.86584 1.25924 1.75360 1.47164 1.22804 0.92723 0.97692 1.02746 1.22135 0.87741 0.95923 0.95229 1.48103 1.18413 1.18616 1.47530 1.20170 0.88113 0.81473 0.79287 1.90691 1.29991 1.76220 1.42800 1.19425 0.87439 0.82472 0.81564 1.90712 1.29762 1.76602 1.44026 1.48694 1.19633 1.18091 1.44459 1.22617 0.87406 0.99075 0.93232 1.22819 0.99339 0.96883 0.96779 1.19511 0.89107 0.83481 0.87219 1.86136 1.40610 1.48629 1.63673 1.21490 1.05794 1.36418 0.93886 0.91421 1.25088 0.97514 0.95297 0.95436 1.69751 1.30858 1.41894 1.10684 0.86414 0.80705 0.79088 0.80689 1.20406 1.19678 1.20975 1.23227 0.90146 0.86614 1.01803 1.23024 0.93555 0.89654 0.97697 0.92340 0.91897 0.92153 0.90455 0.90409 0.77476 0.88837 0.89129 0.89925 0.90196 0.89629 0.91458 0.90494 0.90334 0.76914 0.91972 0.91074 0.90875 0.90270 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.41 37.16 0.35 -0.46 16 2 C -0.14 -0.81 5.25 -26.73 -0.14 -0.95 16 3 C 0.12 1.00 1.00 -88.35 -0.09 0.91 16 4 O -0.54 -5.37 13.17 -35.23 -0.46 -5.83 16 5 C -0.12 -1.10 6.15 -24.89 -0.15 -1.25 16 6 C 0.11 1.46 5.49 -3.07 -0.02 1.45 16 7 N -0.59 -8.63 3.32 -170.88 -0.57 -9.20 16 8 C 0.53 9.52 7.88 -11.59 -0.09 9.42 16 9 O -0.52 -9.91 14.03 5.50 0.08 -9.84 16 10 C 0.51 10.60 7.88 -11.58 -0.09 10.51 16 11 O -0.53 -11.77 14.45 5.49 0.08 -11.69 16 12 N -0.58 -12.59 3.33 -171.03 -0.57 -13.16 16 13 C 0.10 1.98 6.06 -2.53 -0.02 1.96 16 14 C -0.12 -2.51 6.22 -24.58 -0.15 -2.66 16 15 C 0.25 6.05 0.85 -89.93 -0.08 5.97 16 16 O -0.58 -14.72 13.09 -35.23 -0.46 -15.18 16 17 C -0.54 -14.03 8.10 -34.44 -0.28 -14.31 16 18 H 0.07 1.74 7.78 -52.48 -0.41 1.33 16 19 C 0.07 1.82 5.25 -17.82 -0.09 1.72 16 20 N -0.89 -23.62 11.01 55.43 0.61 -23.01 16 21 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.10 2.51 5.24 -3.07 -0.02 2.49 16 26 C 0.08 0.90 5.38 -2.40 -0.01 0.88 16 27 H 0.06 0.26 6.75 -51.93 -0.35 -0.09 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.32 7.51 -51.93 -0.39 -0.07 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 32 H 0.38 2.51 7.25 45.56 0.33 2.84 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.62 8.04 -51.93 -0.42 0.21 16 35 H 0.08 1.24 7.58 -51.93 -0.39 0.85 16 36 H 0.08 1.08 7.69 -51.93 -0.40 0.68 16 37 H 0.09 1.61 6.16 -51.93 -0.32 1.29 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.38 9.75 7.48 45.56 0.34 10.09 16 42 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.07 1.87 7.93 -51.93 -0.41 1.46 16 44 H 0.07 1.91 7.81 -51.93 -0.41 1.51 16 45 H 0.08 0.74 7.99 -51.93 -0.41 0.33 16 46 H 0.08 0.92 7.97 -51.93 -0.41 0.50 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -30.62 366.48 -7.41 -38.03 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -5.74 Total: 13.33 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: -0.88 Total: 15.69 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.53 Total: -45.37 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -0.77 Total: -42.53 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.62 -7.41 -38.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328428007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.886 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds