Wall clock time and date at job start Fri Apr 10 2020 18:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46999 * 2 1 4 4 O 1.42895 * 110.92109 * 303.90125 * 3 2 1 5 5 C 1.55164 * 111.00157 * 180.02562 * 3 2 1 6 6 C 1.54324 * 102.94085 * 206.42511 * 5 3 2 7 7 N 1.47019 * 107.27386 * 22.19469 * 6 5 3 8 8 C 1.34771 * 125.65301 * 181.01959 * 7 6 5 9 9 O 1.21347 * 120.00595 * 180.02562 * 8 7 6 10 10 C 1.49451 * 119.99908 * 0.02704 * 8 7 6 11 11 O 1.21358 * 119.99940 * 359.97438 * 10 8 7 12 12 N 1.34781 * 120.00442 * 179.97438 * 10 8 7 13 13 C 1.47427 * 125.64049 * 359.97438 * 12 10 8 14 14 C 1.54914 * 104.82738 * 155.91589 * 13 12 10 15 15 C 1.55163 * 101.58277 * 37.00550 * 14 13 12 16 16 O 1.42901 * 110.71571 * 83.03771 * 15 14 13 17 17 C 1.50701 * 110.72006 * 206.13406 * 15 14 13 18 18 H 1.08006 * 119.99828 * 357.27079 * 17 15 14 19 19 C 1.37869 * 119.99948 * 177.27218 * 17 15 14 20 20 N 1.31522 * 120.00061 * 353.79251 * 19 17 15 21 21 Si 1.86799 * 120.00173 * 173.79616 * 19 17 15 22 22 H 1.48501 * 109.47481 * 84.97518 * 21 19 17 23 23 H 1.48506 * 109.46781 * 324.97492 * 21 19 17 24 24 H 1.48499 * 109.47166 * 204.98047 * 21 19 17 25 25 C 1.47013 * 125.65159 * 180.02562 * 12 10 8 26 26 C 1.47434 * 108.70065 * 1.28746 * 7 6 5 27 27 H 1.09005 * 109.47143 * 59.99673 * 1 2 3 28 28 H 1.08993 * 109.47241 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46903 * 299.99832 * 1 2 3 30 30 H 1.09005 * 109.47084 * 240.00479 * 2 1 3 31 31 H 1.08999 * 109.47565 * 120.00460 * 2 1 3 32 32 H 0.96707 * 113.99586 * 56.10061 * 4 3 2 33 33 H 1.09003 * 110.71844 * 88.06695 * 5 3 2 34 34 H 1.08996 * 110.71784 * 324.78896 * 5 3 2 35 35 H 1.09001 * 109.88580 * 262.77621 * 6 5 3 36 36 H 1.09000 * 110.00922 * 141.68459 * 6 5 3 37 37 H 1.08991 * 110.37346 * 37.07599 * 13 12 10 38 38 H 1.09001 * 110.45984 * 274.79700 * 13 12 10 39 39 H 1.08996 * 111.00616 * 278.92946 * 14 13 12 40 40 H 1.09000 * 111.03753 * 155.09207 * 14 13 12 41 41 H 0.96706 * 113.99275 * 182.44294 * 16 15 14 42 42 H 0.97003 * 119.99745 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.88075 * 61.59319 * 25 12 10 44 44 H 1.09005 * 109.88454 * 300.43345 * 25 12 10 45 45 H 1.08998 * 110.36684 * 94.48507 * 26 7 6 46 46 H 1.09002 * 110.36721 * 216.80439 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5081 2.1717 -1.1078 5 6 3.5911 1.4840 -0.0006 6 6 3.9008 2.8395 0.6688 7 7 2.7216 3.2137 1.4631 8 6 2.5874 4.3435 2.1856 9 8 1.5650 4.5492 2.8059 10 6 3.6978 5.3431 2.2227 11 8 4.7205 5.1372 1.6027 12 7 3.5635 6.4732 2.9447 13 6 2.3807 6.8485 3.7408 14 6 2.9193 7.8278 4.8135 15 6 3.9906 8.6116 4.0100 16 8 3.3879 9.6705 3.2633 17 6 5.0579 9.1494 4.9280 18 1 4.9776 9.0011 5.9948 19 6 6.1369 9.8307 4.4060 20 7 6.2991 9.9063 3.1030 21 14 7.3684 10.6465 5.5493 22 1 8.3840 9.6503 5.9750 23 1 6.6609 11.1736 6.7439 24 1 8.0391 11.7643 4.8381 25 6 4.5715 7.5362 3.0680 26 6 1.7128 2.1452 1.3437 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.5420 2.1740 -1.1498 33 1 3.9770 1.4600 -1.0198 34 1 3.9990 0.6615 0.5869 35 1 4.0890 3.5952 -0.0939 36 1 4.7707 2.7444 1.3187 37 1 1.9472 5.9679 4.2145 38 1 1.6402 7.3438 3.1127 39 1 3.3724 7.2867 5.6442 40 1 2.1316 8.4932 5.1667 41 1 4.0095 10.1680 2.7144 42 1 7.0585 10.3853 2.7358 43 1 4.7736 7.9708 2.0890 44 1 5.4896 7.1291 3.4918 45 1 1.8030 1.4439 2.1732 46 1 0.7101 2.5718 1.3139 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328428007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:47 Heat of formation + Delta-G solvation = -180.443290 kcal Electronic energy + Delta-G solvation = -29100.782128 eV Core-core repulsion = 24989.699785 eV Total energy + Delta-G solvation = -4111.082342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.04664 -40.71505 -39.44882 -38.91549 -36.82988 -36.00942 -34.25730 -33.77933 -31.91529 -31.73487 -29.84590 -29.38585 -27.71033 -26.28301 -24.68613 -23.34276 -22.92542 -21.48921 -21.26506 -20.34948 -19.16302 -18.50339 -18.26678 -17.81613 -17.54354 -17.18291 -16.63888 -16.47384 -16.14718 -16.05849 -15.15156 -15.02998 -14.83776 -14.81818 -14.62871 -14.57409 -14.33391 -13.94276 -13.69701 -13.55597 -13.45089 -13.36115 -12.97157 -12.84598 -12.66592 -12.62581 -12.49923 -12.42298 -12.34456 -12.29644 -12.08461 -11.86515 -11.46731 -11.17714 -11.03132 -10.74898 -10.56897 -10.30183 -9.98213 -9.68638 -8.28136 -6.44095 0.27362 1.12401 1.41944 1.44272 1.54002 2.03850 2.29103 2.39171 2.96930 2.99967 3.17731 3.36943 3.54127 3.71884 3.75489 4.00937 4.12762 4.17813 4.21029 4.31573 4.38954 4.42667 4.56080 4.57224 4.59778 4.70269 4.82985 4.86206 4.89370 4.94629 5.02756 5.05427 5.07134 5.13736 5.16395 5.25277 5.29678 5.41488 5.43733 5.70589 5.95145 6.00712 6.26007 6.47382 6.63672 6.74676 6.85867 7.24219 7.30732 8.77815 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.028153 B = 0.002789 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.312747 B =10036.597720 C =10491.313972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.131 4.131 3 C 0.123 3.877 4 O -0.564 6.564 5 C -0.113 4.113 6 C 0.106 3.894 7 N -0.584 5.584 8 C 0.526 3.474 9 O -0.534 6.534 10 C 0.501 3.499 11 O -0.552 6.552 12 N -0.586 5.586 13 C 0.109 3.891 14 C -0.113 4.113 15 C 0.234 3.766 16 O -0.586 6.586 17 C -0.558 4.558 18 H 0.069 0.931 19 C 0.027 3.973 20 N -0.914 5.914 21 Si 0.965 3.035 22 H -0.276 1.276 23 H -0.267 1.267 24 H -0.281 1.281 25 C 0.121 3.879 26 C 0.076 3.924 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.389 0.611 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.376 0.624 42 H 0.271 0.729 43 H 0.042 0.958 44 H 0.047 0.953 45 H 0.101 0.899 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.707 -20.959 -5.527 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.169 4.169 3 C 0.081 3.919 4 O -0.373 6.373 5 C -0.151 4.151 6 C -0.016 4.016 7 N -0.318 5.318 8 C 0.309 3.691 9 O -0.412 6.412 10 C 0.285 3.715 11 O -0.432 6.432 12 N -0.318 5.318 13 C -0.013 4.013 14 C -0.151 4.151 15 C 0.194 3.806 16 O -0.393 6.393 17 C -0.596 4.596 18 H 0.087 0.913 19 C -0.174 4.174 20 N -0.553 5.553 21 Si 0.791 3.209 22 H -0.202 1.202 23 H -0.191 1.191 24 H -0.207 1.207 25 C -0.001 4.001 26 C -0.045 4.045 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.240 0.760 33 H 0.118 0.882 34 H 0.138 0.862 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.225 0.775 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.119 0.881 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.521 -20.994 -5.486 23.696 hybrid contribution 0.987 1.158 0.092 1.525 sum -8.533 -19.836 -5.394 22.257 Atomic orbital electron populations 1.21864 0.94700 1.03287 1.02213 1.21995 0.97164 0.93042 1.04659 1.22434 0.94125 0.91611 0.83695 1.86558 1.27312 1.75911 1.47544 1.22857 0.93375 0.95779 1.03079 1.22230 0.87230 0.97709 0.94458 1.48218 1.19802 1.17991 1.45740 1.19512 0.87020 0.82101 0.80471 1.90671 1.29840 1.76720 1.43935 1.20126 0.88153 0.82630 0.80604 1.90690 1.30896 1.77087 1.44498 1.48739 1.19612 1.18120 1.45342 1.22619 0.86530 0.99452 0.92685 1.22821 0.98669 0.96773 0.96830 1.19703 0.90296 0.83308 0.87326 1.86126 1.40574 1.48917 1.63705 1.21773 1.06613 1.37008 0.94208 0.91305 1.25821 0.99141 0.95717 0.96740 1.69855 1.31290 1.42161 1.11972 0.85454 0.78486 0.78066 0.78940 1.20206 1.19136 1.20683 1.22761 0.90027 0.87369 0.99965 1.23417 0.92315 0.88783 0.99965 0.92009 0.90961 0.92487 0.89659 0.89022 0.76015 0.88205 0.86206 0.92553 0.90927 0.87951 0.91553 0.89554 0.88956 0.77533 0.91959 0.93955 0.93479 0.88123 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.41 71.98 0.68 -0.45 16 2 C -0.13 -1.05 5.25 30.59 0.16 -0.89 16 3 C 0.12 1.80 1.00 -9.32 -0.01 1.79 16 4 O -0.56 -10.10 13.17 -148.98 -1.96 -12.06 16 5 C -0.11 -1.78 6.15 31.79 0.20 -1.58 16 6 C 0.11 2.72 5.49 86.73 0.48 3.20 16 7 N -0.58 -16.55 3.32 -812.92 -2.70 -19.25 16 8 C 0.53 18.93 7.88 87.27 0.69 19.62 16 9 O -0.53 -19.83 14.03 -3.24 -0.05 -19.88 16 10 C 0.50 21.37 7.88 87.27 0.69 22.06 16 11 O -0.55 -25.33 14.45 -3.27 -0.05 -25.38 16 12 N -0.59 -26.14 3.33 -813.36 -2.71 -28.84 16 13 C 0.11 4.31 6.06 86.86 0.53 4.83 16 14 C -0.11 -4.67 6.22 31.99 0.20 -4.47 16 15 C 0.23 11.63 0.85 -10.35 -0.01 11.62 16 16 O -0.59 -30.18 13.09 -148.98 -1.95 -32.13 16 17 C -0.56 -29.40 8.10 25.60 0.21 -29.19 16 18 H 0.07 3.53 7.78 -2.91 -0.02 3.50 16 19 C 0.03 1.41 5.25 84.65 0.44 1.86 16 20 N -0.91 -49.47 11.01 21.45 0.24 -49.23 16 21 Si 0.97 41.85 29.54 68.60 2.03 43.87 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 C 0.12 6.14 5.24 86.73 0.45 6.59 16 26 C 0.08 1.47 5.38 86.93 0.47 1.94 16 27 H 0.06 0.39 6.75 -2.38 -0.02 0.37 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.44 7.51 -2.39 -0.02 0.42 16 30 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.09 0.53 8.07 -2.39 -0.02 0.51 16 32 H 0.39 4.46 7.25 -74.05 -0.54 3.93 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 34 H 0.12 1.21 8.04 -2.39 -0.02 1.19 16 35 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 36 H 0.07 1.96 7.69 -2.39 -0.02 1.94 16 37 H 0.10 3.74 6.16 -2.39 -0.01 3.73 16 38 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.09 3.37 8.03 -2.39 -0.02 3.35 16 40 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 41 H 0.38 19.89 7.48 -74.05 -0.55 19.34 16 42 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 43 H 0.04 2.35 7.93 -2.39 -0.02 2.33 16 44 H 0.05 2.58 7.81 -2.38 -0.02 2.56 16 45 H 0.10 1.56 7.99 -2.39 -0.02 1.55 16 46 H 0.08 1.63 7.97 -2.39 -0.02 1.62 16 Total: -1.00 -66.99 366.48 -2.06 -69.05 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -0.08 Total: 36.93 kcal Atomic # 6 Polarization: 31.75 SS G_CDS: 5.17 Total: 36.91 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -5.17 Total: -97.32 kcal Atomic # 8 Polarization: -85.44 SS G_CDS: -4.00 Total: -89.45 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -66.99 -2.06 -69.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328428007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.391 kcal (2) G-P(sol) polarization free energy of solvation -66.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds