Wall clock time and date at job start Fri Apr 10 2020 18:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 O 1.42892 * 110.89009 * 300.69809 * 9 7 2 11 11 C 1.55164 * 111.00114 * 176.81720 * 9 7 2 12 12 C 1.54368 * 102.92138 * 206.45086 * 11 9 7 13 13 N 1.47026 * 107.28351 * 22.14379 * 12 11 9 14 14 C 1.34784 * 125.64269 * 181.12378 * 13 12 11 15 15 O 1.21348 * 119.99878 * 179.97438 * 14 13 12 16 16 C 1.49450 * 120.00388 * 359.95822 * 14 13 12 17 17 O 1.21353 * 119.99577 * 0.02562 * 16 14 13 18 18 N 1.34770 * 120.00449 * 179.97438 * 16 14 13 19 19 C 1.46499 * 120.00199 * 180.02562 * 18 16 14 20 20 C 1.53005 * 109.46983 * 180.02562 * 19 18 16 21 21 H 1.09003 * 109.51845 * 304.99710 * 20 19 18 22 22 C 1.53174 * 109.52209 * 184.87731 * 20 19 18 23 23 C 1.53174 * 109.03643 * 183.11397 * 22 20 19 24 24 C 1.53090 * 109.16605 * 56.97656 * 23 22 20 25 25 O 1.42902 * 109.41485 * 302.39215 * 24 23 22 26 26 C 1.42904 * 114.15406 * 61.12232 * 25 24 23 27 27 C 1.47417 * 108.70828 * 1.08636 * 13 12 11 28 28 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 29 29 H 0.96704 * 113.99940 * 59.30209 * 10 9 7 30 30 H 1.08997 * 110.72323 * 324.78935 * 11 9 7 31 31 H 1.09008 * 110.71678 * 88.06074 * 11 9 7 32 32 H 1.08999 * 109.85083 * 262.73536 * 12 11 9 33 33 H 1.09006 * 110.02717 * 141.64686 * 12 11 9 34 34 H 0.96999 * 119.99687 * 0.02562 * 18 16 14 35 35 H 1.08998 * 109.46976 * 299.99312 * 19 18 16 36 36 H 1.09000 * 109.47326 * 60.00212 * 19 18 16 37 37 H 1.09004 * 109.53973 * 302.97301 * 22 20 19 38 38 H 1.08991 * 109.54720 * 63.15061 * 22 20 19 39 39 H 1.09009 * 109.52468 * 176.88191 * 23 22 20 40 40 H 1.09004 * 109.52238 * 297.00539 * 23 22 20 41 41 H 1.08997 * 109.48296 * 62.37312 * 24 23 22 42 42 H 1.09005 * 109.48112 * 182.39916 * 24 23 22 43 43 H 1.09008 * 109.54245 * 178.92806 * 26 25 24 44 44 H 1.09000 * 109.42978 * 58.89296 * 26 25 24 45 45 H 1.08994 * 110.37240 * 217.03447 * 27 13 12 46 46 H 1.09004 * 110.45576 * 94.75858 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 8 0.4056 -2.5993 1.1481 11 6 2.2255 -3.7040 -0.0792 12 6 1.3641 -4.8016 -0.7396 13 7 0.2764 -4.1270 -1.4632 14 6 -0.7049 -4.7394 -2.1550 15 8 -1.5549 -4.0793 -2.7157 16 6 -0.7460 -6.2313 -2.2320 17 8 0.1040 -6.8914 -1.6712 18 7 -1.7275 -6.8437 -2.9234 19 6 -1.7680 -8.3062 -2.9983 20 6 -2.9718 -8.7407 -3.8369 21 1 -3.8804 -8.3017 -3.4245 22 6 -3.0860 -10.2680 -3.8155 23 6 -4.2461 -10.6950 -4.7201 24 6 -4.0102 -10.1496 -6.1310 25 8 -3.8825 -8.7274 -6.0753 26 6 -2.7861 -8.2694 -5.2815 27 6 0.4363 -2.6700 -1.3059 28 1 -0.4850 0.8401 0.0004 29 1 -0.2531 -1.8944 1.2142 30 1 3.0867 -3.4629 -0.7024 31 1 2.5431 -4.0097 0.9177 32 1 0.9492 -5.4571 0.0261 33 1 1.9688 -5.3819 -1.4365 34 1 -2.4070 -6.3161 -3.3713 35 1 -0.8519 -8.6718 -3.4621 36 1 -1.8566 -8.7192 -1.9935 37 1 -2.1580 -10.7081 -4.1806 38 1 -3.2734 -10.6055 -2.7963 39 1 -4.2998 -11.7832 -4.7545 40 1 -5.1810 -10.2965 -4.3261 41 1 -3.0963 -10.5809 -6.5394 42 1 -4.8537 -10.4143 -6.7687 43 1 -2.7477 -7.1803 -5.3064 44 1 -1.8559 -8.6751 -5.6794 45 1 -0.5373 -2.1894 -1.2113 46 1 0.9837 -2.2533 -2.1515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329320782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:01 Heat of formation + Delta-G solvation = -193.402248 kcal Electronic energy + Delta-G solvation = -28332.964333 eV Core-core repulsion = 24221.320048 eV Total energy + Delta-G solvation = -4111.644285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85818 -40.58363 -39.84435 -38.87725 -36.87071 -36.01567 -34.39333 -34.20508 -32.30495 -31.95889 -29.74116 -28.24070 -27.14727 -26.04643 -25.20706 -23.65086 -22.59305 -21.61586 -21.40704 -20.66143 -19.19187 -18.79420 -18.00229 -17.49702 -17.11642 -17.10004 -16.99065 -16.76782 -16.27975 -16.07833 -15.69745 -15.53636 -15.18124 -14.90310 -14.68693 -14.67654 -14.31933 -13.97614 -13.82322 -13.59497 -13.50981 -13.34027 -12.98254 -12.82400 -12.71642 -12.53587 -12.33731 -12.26723 -12.21553 -12.11265 -12.04520 -11.74025 -11.27418 -11.23355 -10.74984 -10.58639 -10.50000 -10.35941 -10.29997 -9.64590 -8.25865 -6.42586 0.32516 1.25632 1.45496 1.46350 1.54083 2.10555 2.37215 2.50239 2.89075 3.00118 3.29632 3.64135 3.70371 3.77224 3.78312 4.01861 4.06764 4.14726 4.19101 4.28625 4.32244 4.47117 4.52605 4.63263 4.65458 4.69348 4.72965 4.78850 4.90321 4.95756 4.97234 5.05691 5.08476 5.12025 5.15597 5.20051 5.33548 5.36696 5.42825 5.74479 5.94472 6.04769 6.23588 6.35836 6.59299 6.66811 6.90222 7.28106 7.35703 8.79842 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.030128 B = 0.002354 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.138235 B =11889.884106 C =12385.153434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.027 3.973 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.233 3.767 10 O -0.589 6.589 11 C -0.116 4.116 12 C 0.119 3.881 13 N -0.582 5.582 14 C 0.500 3.500 15 O -0.562 6.562 16 C 0.518 3.482 17 O -0.528 6.528 18 N -0.691 5.691 19 C 0.127 3.873 20 C -0.127 4.127 21 H 0.085 0.915 22 C -0.113 4.113 23 C -0.152 4.152 24 C 0.049 3.951 25 O -0.404 6.404 26 C 0.061 3.939 27 C 0.104 3.896 28 H 0.271 0.729 29 H 0.376 0.624 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.416 0.584 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 -21.005 -9.430 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.192 3.808 10 O -0.397 6.397 11 C -0.153 4.153 12 C -0.003 4.003 13 N -0.314 5.314 14 C 0.283 3.717 15 O -0.442 6.442 16 C 0.298 3.702 17 O -0.405 6.405 18 N -0.345 5.345 19 C 0.004 3.996 20 C -0.146 4.146 21 H 0.104 0.896 22 C -0.151 4.151 23 C -0.189 4.189 24 C -0.027 4.027 25 O -0.323 6.323 26 C -0.016 4.016 27 C -0.019 4.019 28 H 0.080 0.920 29 H 0.226 0.774 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.254 0.746 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.037 -21.501 -9.352 23.982 hybrid contribution -0.363 1.904 -0.094 1.941 sum -5.400 -19.597 -9.445 22.415 Atomic orbital electron populations 1.69749 1.07146 1.28646 1.49990 1.25831 0.95787 1.02828 0.92959 0.85482 0.78271 0.78193 0.78934 1.19428 1.21109 1.19566 1.21750 0.94061 0.90921 1.52630 0.91064 1.19861 0.86665 0.93265 0.80960 1.86098 1.51475 1.54642 1.47530 1.22739 0.97520 0.93548 1.01517 1.22173 0.87613 0.94760 0.95710 1.48692 1.25883 1.09288 1.47516 1.20285 0.81679 0.89384 0.80329 1.90705 1.38987 1.67344 1.47189 1.19731 0.82833 0.87433 0.80168 1.90725 1.38562 1.66238 1.44942 1.45787 1.28305 1.08909 1.51498 1.21614 0.99351 0.77197 1.01390 1.21995 0.98084 0.98650 0.95860 0.89624 1.21579 0.99709 0.92300 1.01532 1.22167 0.98826 1.02480 0.95449 1.22823 1.02496 0.80107 0.97249 1.87937 1.50833 1.23201 1.70326 1.22698 0.89599 0.99900 0.89408 1.23083 1.01050 0.77219 1.00500 0.91960 0.77410 0.88844 0.89634 0.91273 0.89574 0.74648 0.90129 0.90204 0.90412 0.90025 0.88720 0.91478 0.92256 0.87905 0.89425 0.92047 0.92623 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.06 10.69 21.45 0.23 -48.83 16 2 C 0.03 1.39 5.29 84.66 0.45 1.83 16 3 Si 0.97 41.15 29.54 68.60 2.03 43.18 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.56 -28.54 8.26 25.60 0.21 -28.33 16 8 H 0.07 3.52 7.78 -2.91 -0.02 3.50 16 9 C 0.23 11.31 0.88 -10.15 -0.01 11.30 16 10 O -0.59 -30.60 13.17 -148.98 -1.96 -32.56 16 11 C -0.12 -4.57 6.13 31.80 0.19 -4.37 16 12 C 0.12 4.46 5.49 86.74 0.48 4.93 16 13 N -0.58 -24.64 3.33 -813.28 -2.71 -27.34 16 14 C 0.50 19.97 7.91 87.27 0.69 20.66 16 15 O -0.56 -24.80 16.73 -3.24 -0.05 -24.86 16 16 C 0.52 16.66 7.86 87.27 0.69 17.35 16 17 O -0.53 -17.97 14.12 -3.26 -0.05 -18.01 16 18 N -0.69 -16.49 5.30 -464.41 -2.46 -18.95 16 19 C 0.13 2.18 5.07 86.38 0.44 2.62 16 20 C -0.13 -1.74 2.42 -10.70 -0.03 -1.77 16 21 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 22 C -0.11 -1.13 5.31 30.71 0.16 -0.97 16 23 C -0.15 -1.41 6.14 30.68 0.19 -1.22 16 24 C 0.05 0.58 6.84 72.01 0.49 1.07 16 25 O -0.40 -7.38 10.76 -148.98 -1.60 -8.98 16 26 C 0.06 0.96 5.98 72.01 0.43 1.39 16 27 C 0.10 5.03 5.51 86.86 0.48 5.50 16 28 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.38 20.32 7.25 -74.05 -0.54 19.78 16 30 H 0.09 3.38 8.03 -2.39 -0.02 3.36 16 31 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 32 H 0.07 2.60 7.58 -2.39 -0.02 2.59 16 33 H 0.09 2.86 7.69 -2.38 -0.02 2.84 16 34 H 0.42 9.49 7.15 -92.71 -0.66 8.82 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.07 0.72 8.14 -2.38 -0.02 0.71 16 41 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.09 1.51 7.26 -2.38 -0.02 1.49 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 3.04 7.47 -2.39 -0.02 3.02 16 46 H 0.06 2.87 8.03 -2.39 -0.02 2.85 16 Total: -1.00 -63.35 370.15 -1.91 -65.26 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: -0.20 Total: 41.10 kcal Atomic # 6 Polarization: 25.14 SS G_CDS: 4.86 Total: 30.00 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -4.94 Total: -95.13 kcal Atomic # 8 Polarization: -80.75 SS G_CDS: -3.67 Total: -84.41 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -63.35 -1.91 -65.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329320782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.143 kcal (2) G-P(sol) polarization free energy of solvation -63.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds