Wall clock time and date at job start Fri Apr 10 2020 18:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99806 * 2 1 4 4 C 1.52996 * 109.47159 * 125.00039 * 3 2 1 5 5 O 1.42897 * 109.46822 * 179.97438 * 4 3 2 6 6 C 1.42907 * 113.99658 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.46883 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47076 * 65.00281 * 7 6 5 9 9 C 1.34774 * 120.00160 * 179.97438 * 8 7 6 10 10 O 1.21346 * 119.99798 * 359.97438 * 9 8 7 11 11 C 1.49448 * 120.00247 * 180.02562 * 9 8 7 12 12 O 1.21355 * 120.00006 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00247 * 179.97438 * 11 9 8 14 14 C 1.47290 * 125.79121 * 359.97438 * 13 11 9 15 15 C 1.54325 * 107.30599 * 178.92556 * 14 13 11 16 16 C 1.55154 * 102.94303 * 337.81911 * 15 14 13 17 17 O 1.42902 * 111.00280 * 277.42723 * 16 15 14 18 18 C 1.50693 * 111.03939 * 153.59058 * 16 15 14 19 19 H 1.08004 * 120.00401 * 6.33015 * 18 16 15 20 20 C 1.37876 * 120.00383 * 186.33190 * 18 16 15 21 21 N 1.31512 * 119.99646 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00223 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47177 * 59.99714 * 22 20 18 24 24 H 1.48506 * 109.46953 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47102 * 299.99690 * 22 20 18 26 26 C 1.47425 * 125.65138 * 179.97438 * 13 11 9 27 27 H 1.08004 * 119.99966 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00457 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.99973 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46829 * 4.99659 * 3 2 1 31 31 H 1.08997 * 109.46658 * 245.00360 * 3 2 1 32 32 H 1.09000 * 109.46838 * 59.99954 * 4 3 2 33 33 H 1.09002 * 109.47133 * 299.99756 * 4 3 2 34 34 H 1.09002 * 109.47197 * 60.00260 * 6 5 4 35 35 H 1.08992 * 109.47329 * 299.99766 * 6 5 4 36 36 H 1.08998 * 109.46939 * 304.99825 * 7 6 5 37 37 H 1.09001 * 109.46501 * 184.99908 * 7 6 5 38 38 H 0.97005 * 120.00064 * 359.97438 * 8 7 6 39 39 H 1.09004 * 109.85762 * 59.50172 * 14 13 11 40 40 H 1.08995 * 110.00297 * 298.43119 * 14 13 11 41 41 H 1.09002 * 110.72180 * 219.45147 * 15 14 13 42 42 H 1.08997 * 110.72163 * 96.18354 * 15 14 13 43 43 H 0.96703 * 114.00194 * 173.65090 * 17 16 15 44 44 H 0.97010 * 119.99834 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.36696 * 85.25946 * 26 13 11 46 46 H 1.08995 * 110.36608 * 323.04783 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 8 3.7499 2.5705 1.1812 6 6 4.6886 2.6997 2.2509 7 6 5.3921 4.0548 2.1511 8 7 4.4168 5.1279 2.3596 9 6 4.8122 6.4156 2.3166 10 8 5.9762 6.6861 2.1056 11 6 3.8174 7.5103 2.5299 12 8 2.6535 7.2397 2.7414 13 7 4.2129 8.7980 2.4874 14 6 5.5865 9.2696 2.2420 15 6 5.5519 10.8124 2.2580 16 6 4.0651 11.1299 1.9486 17 8 3.8137 11.0854 0.5426 18 6 3.6658 12.4642 2.5239 19 1 4.4106 13.1015 2.9774 20 6 2.3497 12.8717 2.4714 21 7 1.4428 12.0960 1.9188 22 14 1.8549 14.5261 3.1838 23 1 2.5934 15.6074 2.4835 24 1 0.3947 14.7265 3.0021 25 1 2.1833 14.5597 4.6317 26 6 3.3412 9.9714 2.6790 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5401 0.9352 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6212 1.4026 -0.9314 32 1 3.7400 0.5066 1.0920 33 1 2.4772 1.2357 2.1130 34 1 5.4277 1.9013 2.1842 35 1 4.1648 2.6313 3.2042 36 1 5.8415 4.1590 1.1635 37 1 6.1696 4.1174 2.9125 38 1 3.4865 4.9116 2.5287 39 1 5.9312 8.9165 1.2700 40 1 6.2512 8.9056 3.0254 41 1 6.2025 11.2208 1.4847 42 1 5.8316 11.1942 3.2398 43 1 2.8808 11.1812 0.3066 44 1 0.5168 12.3828 1.8815 45 1 3.2376 10.1978 3.7402 46 1 2.3628 9.7940 2.2325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329350289.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:14 Heat of formation + Delta-G solvation = -167.249741 kcal Electronic energy + Delta-G solvation = -27672.536039 eV Core-core repulsion = 23562.025811 eV Total energy + Delta-G solvation = -4110.510227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.79153 -40.10706 -39.17349 -38.84825 -36.62011 -36.04122 -35.36850 -34.24266 -31.95144 -31.33369 -29.75562 -29.50873 -27.62147 -25.59850 -24.02906 -23.90117 -22.77121 -21.56250 -20.99952 -20.66479 -19.15768 -18.76917 -18.10969 -17.75552 -17.35917 -17.16465 -17.05095 -16.57638 -16.31691 -16.02366 -15.84945 -15.67042 -14.97313 -14.83284 -14.66620 -14.60837 -14.43625 -13.94808 -13.76660 -13.65915 -13.51257 -13.31347 -12.81610 -12.74922 -12.69526 -12.52749 -12.36561 -12.34231 -12.26460 -12.10855 -12.05647 -11.92912 -11.21270 -10.76855 -10.63519 -10.53936 -10.36430 -10.31244 -10.26514 -9.64566 -8.24720 -6.41850 0.34591 1.28527 1.33923 1.45458 1.46608 1.54201 2.12660 2.37774 2.50813 2.67356 3.01051 3.33476 3.77527 3.82594 4.01707 4.05890 4.13573 4.15125 4.18009 4.27676 4.32674 4.40160 4.48984 4.51099 4.62811 4.66202 4.73452 4.79654 4.91689 4.97609 5.03808 5.06015 5.09937 5.13555 5.18236 5.33525 5.43563 5.71541 5.74389 5.85157 5.97305 6.07037 6.21999 6.36990 6.61525 6.68032 6.92564 7.26417 7.34757 8.80719 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.017071 B = 0.002366 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.801821 B =11829.083508 C =12978.562385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C -0.097 4.097 4 C 0.067 3.933 5 O -0.413 6.413 6 C 0.053 3.947 7 C 0.118 3.882 8 N -0.686 5.686 9 C 0.516 3.484 10 O -0.531 6.531 11 C 0.500 3.500 12 O -0.563 6.563 13 N -0.584 5.584 14 C 0.120 3.880 15 C -0.115 4.115 16 C 0.232 3.768 17 O -0.588 6.588 18 C -0.555 4.555 19 H 0.071 0.929 20 C 0.027 3.973 21 N -0.915 5.915 22 Si 0.966 3.034 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.269 1.269 26 C 0.106 3.894 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.127 0.873 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.417 0.583 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.374 0.626 44 H 0.270 0.730 45 H 0.057 0.943 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.972 -23.074 1.067 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.176 4.176 3 C -0.135 4.135 4 C -0.009 4.009 5 O -0.333 6.333 6 C -0.023 4.023 7 C -0.004 4.004 8 N -0.340 5.340 9 C 0.296 3.704 10 O -0.408 6.408 11 C 0.284 3.716 12 O -0.443 6.443 13 N -0.316 5.316 14 C -0.002 4.002 15 C -0.153 4.153 16 C 0.192 3.808 17 O -0.396 6.396 18 C -0.593 4.593 19 H 0.089 0.911 20 C -0.174 4.174 21 N -0.554 5.554 22 Si 0.791 3.209 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.194 1.194 26 C -0.016 4.016 27 H 0.131 0.869 28 H 0.110 0.890 29 H 0.144 0.856 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.253 0.747 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.223 0.777 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.641 -23.081 0.829 23.775 hybrid contribution -1.813 0.799 0.425 2.027 sum 3.828 -22.282 1.254 22.643 Atomic orbital electron populations 1.24084 0.96156 1.02578 1.00152 1.22862 0.96056 0.97940 1.00739 1.20671 0.97937 0.96194 0.98652 1.22520 0.94156 0.85832 0.98441 1.87914 1.55757 1.39098 1.50581 1.22857 0.92809 0.96047 0.90611 1.21759 0.91196 0.84000 1.03490 1.45720 1.14468 1.04046 1.69729 1.19741 0.87653 0.84409 0.78550 1.90714 1.18430 1.83528 1.48111 1.20282 0.88465 0.83525 0.79332 1.90700 1.19612 1.83157 1.50852 1.48771 1.12584 1.04804 1.65412 1.22203 0.81386 0.94726 1.01904 1.22727 0.96368 0.93246 1.02942 1.19880 0.91179 0.91004 0.78744 1.86126 1.31634 1.96186 1.25629 1.21725 0.94381 1.03449 1.39788 0.91107 1.25836 0.96381 1.00772 0.94451 1.69824 1.02781 1.38332 1.44449 0.85482 0.76859 0.79479 0.79051 1.19620 1.21118 1.19356 1.23052 0.94392 0.84176 1.00002 0.86889 0.89030 0.85559 0.92095 0.90515 0.91231 0.92556 0.88365 0.91061 0.90809 0.87761 0.74666 0.91358 0.89513 0.89622 0.88780 0.77736 0.92054 0.92521 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 14.32 67.78 0.97 -1.42 16 2 C -0.16 -1.92 9.52 25.64 0.24 -1.67 16 3 C -0.10 -1.46 6.03 29.85 0.18 -1.28 16 4 C 0.07 0.90 5.92 71.98 0.43 1.33 16 5 O -0.41 -7.57 10.29 -148.98 -1.53 -9.11 16 6 C 0.05 0.69 6.07 71.98 0.44 1.12 16 7 C 0.12 2.14 6.06 86.38 0.52 2.66 16 8 N -0.69 -17.81 5.50 -464.42 -2.55 -20.36 16 9 C 0.52 17.49 7.86 87.27 0.69 18.18 16 10 O -0.53 -18.82 14.15 -3.23 -0.05 -18.86 16 11 C 0.50 20.74 7.92 87.27 0.69 21.43 16 12 O -0.56 -25.73 16.73 -3.26 -0.05 -25.78 16 13 N -0.58 -25.36 3.34 -812.69 -2.71 -28.07 16 14 C 0.12 4.57 5.50 86.68 0.48 5.05 16 15 C -0.12 -4.62 6.13 31.78 0.19 -4.43 16 16 C 0.23 11.42 0.87 -10.15 -0.01 11.41 16 17 O -0.59 -30.81 13.16 -148.98 -1.96 -32.78 16 18 C -0.56 -28.83 8.27 25.60 0.21 -28.62 16 19 H 0.07 3.54 7.79 -2.91 -0.02 3.52 16 20 C 0.03 1.39 5.29 84.65 0.45 1.84 16 21 N -0.92 -49.49 10.69 21.45 0.23 -49.26 16 22 Si 0.97 41.48 29.54 68.60 2.03 43.51 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 26 C 0.11 5.22 5.38 86.85 0.47 5.69 16 27 H 0.11 1.05 8.06 -2.91 -0.02 1.02 16 28 H 0.09 1.25 7.84 -2.91 -0.02 1.23 16 29 H 0.13 1.09 8.06 -2.91 -0.02 1.06 16 30 H 0.06 1.10 7.79 -2.39 -0.02 1.08 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.42 10.65 7.94 -92.70 -0.74 9.91 16 39 H 0.07 2.64 7.59 -2.38 -0.02 2.63 16 40 H 0.09 2.94 7.70 -2.39 -0.02 2.92 16 41 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.09 3.45 8.03 -2.39 -0.02 3.43 16 43 H 0.37 20.26 7.56 -74.06 -0.56 19.70 16 44 H 0.27 14.05 8.31 -92.70 -0.77 13.28 16 45 H 0.06 2.85 8.03 -2.39 -0.02 2.83 16 46 H 0.06 3.19 7.32 -2.39 -0.02 3.17 16 Total: -1.00 -65.06 387.00 -0.96 -66.02 By element: Atomic # 1 Polarization: 43.70 SS G_CDS: -0.31 Total: 43.39 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: 5.95 Total: 31.29 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -5.03 Total: -97.68 kcal Atomic # 8 Polarization: -82.93 SS G_CDS: -3.59 Total: -86.53 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -65.06 -0.96 -66.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329350289.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.234 kcal (2) G-P(sol) polarization free energy of solvation -65.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds