Wall clock time and date at job start Fri Apr 10 2020 18:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.52240 * 2 1 4 4 C 1.53037 * 109.49807 * 239.92113 * 2 1 3 5 5 C 1.53045 * 109.53828 * 178.67934 * 4 2 1 6 6 C 1.53190 * 109.31031 * 61.36492 * 5 4 2 7 7 N 1.46963 * 108.89061 * 305.44261 * 6 5 4 8 8 C 1.34780 * 120.65727 * 233.53996 * 7 6 5 9 9 O 1.21339 * 120.00476 * 171.23578 * 8 7 6 10 10 C 1.49457 * 119.99525 * 351.23770 * 8 7 6 11 11 O 1.21347 * 120.00275 * 353.21685 * 10 8 7 12 12 N 1.34777 * 119.99505 * 173.21992 * 10 8 7 13 13 C 1.47017 * 125.64943 * 0.02562 * 12 10 8 14 14 C 1.54334 * 107.26935 * 181.02541 * 13 12 10 15 15 C 1.55157 * 102.94160 * 22.19401 * 14 13 12 16 16 O 1.42902 * 111.00339 * 82.57504 * 15 14 13 17 17 C 1.50706 * 111.00109 * 206.38518 * 15 14 13 18 18 H 1.07998 * 120.00016 * 0.02562 * 17 15 14 19 19 C 1.37874 * 119.99571 * 179.97438 * 17 15 14 20 20 N 1.31517 * 120.00321 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99520 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47014 * 90.00743 * 21 19 17 23 23 H 1.48504 * 109.46772 * 210.00115 * 21 19 17 24 24 H 1.48498 * 109.47167 * 329.99896 * 21 19 17 25 25 C 1.47425 * 125.64645 * 179.71742 * 12 10 8 26 26 C 1.46925 * 118.71393 * 53.35543 * 7 6 5 27 27 H 1.09003 * 109.47496 * 299.91474 * 1 2 3 28 28 H 1.08998 * 109.47529 * 59.91946 * 1 2 3 29 29 H 1.09006 * 109.46704 * 179.97438 * 1 2 3 30 30 H 0.96699 * 114.00064 * 60.07707 * 3 2 1 31 31 H 1.08992 * 109.46154 * 298.69665 * 4 2 1 32 32 H 1.08997 * 109.46085 * 58.66165 * 4 2 1 33 33 H 1.08994 * 109.49717 * 181.31596 * 5 4 2 34 34 H 1.09004 * 109.49880 * 301.41387 * 5 4 2 35 35 H 1.08990 * 109.59240 * 65.15461 * 6 5 4 36 36 H 1.09000 * 109.58727 * 185.58003 * 6 5 4 37 37 H 1.09005 * 109.88682 * 300.43627 * 13 12 10 38 38 H 1.08999 * 109.88513 * 61.45581 * 13 12 10 39 39 H 1.08998 * 110.71753 * 140.55653 * 14 13 12 40 40 H 1.08994 * 110.71637 * 263.65323 * 14 13 12 41 41 H 0.96700 * 113.99306 * 179.97438 * 16 15 14 42 42 H 0.96996 * 119.99621 * 179.97438 * 20 19 17 43 43 H 1.08994 * 110.36548 * 274.74553 * 25 12 10 44 44 H 1.09003 * 110.36944 * 37.06952 * 25 12 10 45 45 H 1.09005 * 109.58637 * 186.78334 * 26 7 6 46 46 H 1.08997 * 109.58361 * 66.50422 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0075 1.3469 0.0000 4 6 2.0408 -0.7230 -1.2483 5 6 3.5709 -0.6949 -1.2660 6 6 4.1053 -1.4265 -0.0308 7 7 3.5045 -0.8320 1.1714 8 6 4.2806 -0.3910 2.1812 9 8 3.7886 0.2393 3.0940 10 6 5.7473 -0.6782 2.1767 11 8 6.2196 -1.4104 1.3322 12 7 6.5453 -0.1239 3.1108 13 6 6.1072 0.7768 4.1870 14 6 7.3633 1.1765 4.9897 15 6 8.5145 0.9301 3.9790 16 8 8.6631 2.0400 3.0913 17 6 9.8081 0.6376 4.6947 18 1 9.8365 0.6218 5.7742 19 6 10.9552 0.3891 3.9712 20 7 10.9206 0.4079 2.6566 21 14 12.5585 0.0258 4.8583 22 1 12.6801 -1.4372 5.0816 23 1 13.6990 0.4968 4.0320 24 1 12.5710 0.7292 6.1661 25 6 8.0011 -0.3255 3.2263 26 6 2.0413 -0.7237 1.2496 27 1 -0.3634 0.5125 0.8908 28 1 -0.3634 0.5151 -0.8892 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7236 1.8649 0.7656 31 1 1.6968 -1.7572 -1.2353 32 1 1.6581 -0.2244 -2.1389 33 1 3.9334 -1.1895 -2.1671 34 1 3.9159 0.3391 -1.2541 35 1 3.8377 -2.4816 -0.0867 36 1 5.1896 -1.3244 0.0137 37 1 5.6417 1.6653 3.7604 38 1 5.3983 0.2621 4.8356 39 1 7.3198 2.2273 5.2759 40 1 7.4765 0.5430 5.8693 41 1 9.3710 1.9319 2.4416 42 1 11.7277 0.2334 2.1477 43 1 8.2149 -1.2279 3.7990 44 1 8.4554 -0.3864 2.2373 45 1 1.7638 -0.1579 2.1389 46 1 1.6034 -1.7206 1.2994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329453401.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:18 Heat of formation + Delta-G solvation = -150.158416 kcal Electronic energy + Delta-G solvation = -29650.789372 eV Core-core repulsion = 25541.020280 eV Total energy + Delta-G solvation = -4109.769092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.81219 -39.30802 -37.97132 -37.32036 -35.64433 -34.27034 -32.66201 -32.18083 -31.58905 -30.25728 -28.04434 -27.44098 -26.36718 -25.28849 -23.31449 -22.48414 -21.68486 -20.25420 -19.66569 -18.85919 -17.28852 -16.99368 -16.77606 -16.60904 -15.79168 -15.46162 -15.25066 -15.07101 -14.76835 -14.53968 -14.31596 -14.11112 -13.70567 -13.26048 -13.07436 -13.03759 -12.89406 -12.73523 -12.52950 -12.34895 -12.18965 -11.87764 -11.65197 -11.59042 -11.41375 -11.13220 -11.07757 -10.87933 -10.63629 -10.56341 -10.50991 -10.48186 -10.28594 -10.19762 -9.41247 -8.84156 -8.72677 -8.63460 -8.42740 -7.89110 -6.32783 -4.42153 1.78616 2.55513 3.18737 3.26632 3.29597 3.55903 3.74649 4.01251 4.23365 4.34489 4.55839 4.58371 4.62227 4.94526 4.95132 5.13398 5.18025 5.34815 5.36242 5.43546 5.48325 5.51109 5.67023 5.74287 5.78975 5.81161 5.86163 5.86679 6.03548 6.11801 6.29783 6.30695 6.42650 6.50070 6.71869 6.79284 6.86464 7.15209 7.21230 7.29115 7.50082 7.70799 7.80297 7.96411 8.06571 8.43489 8.61742 9.27775 9.43524 10.74562 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.026734 B = 0.003091 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.092142 B = 9055.366534 C = 9478.768809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.116 3.884 3 O -0.550 6.550 4 C -0.106 4.106 5 C -0.133 4.133 6 C 0.070 3.930 7 N -0.580 5.580 8 C 0.515 3.485 9 O -0.523 6.523 10 C 0.510 3.490 11 O -0.530 6.530 12 N -0.570 5.570 13 C 0.111 3.889 14 C -0.122 4.122 15 C 0.250 3.750 16 O -0.582 6.582 17 C -0.537 4.537 18 H 0.069 0.931 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.089 3.911 26 C 0.084 3.916 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.376 0.624 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.145 0.855 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.386 0.614 42 H 0.272 0.728 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.886 -3.000 -5.259 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.074 3.926 3 O -0.356 6.356 4 C -0.143 4.143 5 C -0.171 4.171 6 C -0.052 4.052 7 N -0.313 5.313 8 C 0.298 3.702 9 O -0.399 6.399 10 C 0.293 3.707 11 O -0.411 6.411 12 N -0.301 5.301 13 C -0.011 4.011 14 C -0.160 4.160 15 C 0.209 3.791 16 O -0.392 6.392 17 C -0.575 4.575 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.032 4.032 26 C -0.039 4.039 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.224 0.776 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.162 0.838 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.238 0.762 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.032 -3.054 -5.602 19.128 hybrid contribution 0.844 -0.421 0.507 1.070 sum -17.188 -3.475 -5.096 18.261 Atomic orbital electron populations 1.22433 0.95114 1.02901 1.02931 1.21546 0.92397 0.83321 0.95287 1.86572 1.77321 1.22473 1.49213 1.21543 0.96821 0.99573 0.96374 1.21883 0.94776 1.02425 0.97988 1.22890 1.04069 0.95923 0.82269 1.47734 1.05677 1.59820 1.18088 1.20304 0.88076 0.79368 0.82426 1.90688 1.75113 1.38020 1.36063 1.19581 0.86613 0.82164 0.82340 1.90440 1.75532 1.38501 1.36629 1.48658 1.10469 1.43682 1.27246 1.22153 0.97233 0.93162 0.88575 1.22720 0.93515 1.01781 0.97967 1.19629 0.91725 0.82004 0.85752 1.86092 1.59679 1.43301 1.50151 1.21505 0.92920 1.49240 0.93821 0.91315 1.25094 0.99620 0.93554 0.95001 1.69560 1.29825 1.48962 1.05138 0.86364 0.82069 0.78622 0.79636 1.20397 1.20961 1.19646 1.23577 0.74897 1.01409 1.03280 1.22370 0.80462 1.01525 0.99567 0.92009 0.91352 0.91411 0.77614 0.90688 0.91104 0.90633 0.90571 0.91812 0.83823 0.91374 0.91532 0.90498 0.90406 0.76178 0.91817 0.91373 0.89470 0.88677 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 8.82 37.16 0.33 -0.89 16 2 C 0.12 1.12 1.01 -90.50 -0.09 1.03 16 3 O -0.55 -6.41 12.18 -35.23 -0.43 -6.84 16 4 C -0.11 -0.99 4.92 -26.69 -0.13 -1.12 16 5 C -0.13 -1.52 5.94 -26.61 -0.16 -1.67 16 6 C 0.07 0.94 5.97 -3.69 -0.02 0.91 16 7 N -0.58 -8.34 2.92 -173.25 -0.51 -8.85 16 8 C 0.51 9.09 7.69 -11.58 -0.09 9.00 16 9 O -0.52 -9.63 13.60 5.51 0.07 -9.56 16 10 C 0.51 10.32 7.77 -11.58 -0.09 10.23 16 11 O -0.53 -11.23 13.44 5.50 0.07 -11.16 16 12 N -0.57 -12.09 3.32 -170.88 -0.57 -12.66 16 13 C 0.11 2.17 5.50 -3.06 -0.02 2.15 16 14 C -0.12 -2.48 6.12 -24.89 -0.15 -2.64 16 15 C 0.25 6.02 0.89 -89.50 -0.08 5.94 16 16 O -0.58 -14.95 13.19 -35.23 -0.46 -15.41 16 17 C -0.54 -13.72 8.25 -34.44 -0.28 -14.01 16 18 H 0.07 1.72 7.77 -52.49 -0.41 1.31 16 19 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 20 N -0.90 -23.36 10.72 55.43 0.59 -22.77 16 21 Si 0.91 20.00 29.54 -169.99 -5.02 14.98 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 25 C 0.09 2.10 5.64 -2.41 -0.01 2.09 16 26 C 0.08 0.93 5.36 -3.71 -0.02 0.91 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.38 3.45 9.05 45.56 0.41 3.87 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.05 7.61 -51.93 -0.40 0.65 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.15 2.37 4.33 -54.69 -0.24 2.13 16 37 H 0.07 1.34 7.74 -51.93 -0.40 0.94 16 38 H 0.07 1.20 7.55 -51.93 -0.39 0.81 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.08 1.47 8.02 -51.93 -0.42 1.06 16 41 H 0.39 10.18 6.93 45.56 0.32 10.50 16 42 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 43 H 0.07 1.61 8.04 -51.93 -0.42 1.20 16 44 H 0.09 2.26 7.64 -51.93 -0.40 1.86 16 45 H 0.09 1.10 7.01 -51.93 -0.36 0.73 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -29.11 362.69 -7.34 -36.45 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -5.64 Total: 16.72 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: -0.91 Total: 13.62 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.48 Total: -44.28 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -0.75 Total: -42.96 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.11 -7.34 -36.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329453401.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.713 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds