Wall clock time and date at job start Fri Apr 10 2020 18:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.52240 * 2 1 4 4 C 1.53037 * 109.49807 * 239.92113 * 2 1 3 5 5 C 1.53045 * 109.53828 * 178.67934 * 4 2 1 6 6 C 1.53190 * 109.31031 * 61.36492 * 5 4 2 7 7 N 1.46963 * 108.89061 * 305.44261 * 6 5 4 8 8 C 1.34780 * 120.65727 * 233.53996 * 7 6 5 9 9 O 1.21339 * 120.00476 * 171.23578 * 8 7 6 10 10 C 1.49457 * 119.99525 * 351.23770 * 8 7 6 11 11 O 1.21347 * 120.00275 * 353.21685 * 10 8 7 12 12 N 1.34777 * 119.99505 * 173.21992 * 10 8 7 13 13 C 1.47017 * 125.64943 * 0.02562 * 12 10 8 14 14 C 1.54334 * 107.26935 * 181.02541 * 13 12 10 15 15 C 1.55157 * 102.94160 * 22.19401 * 14 13 12 16 16 O 1.42902 * 111.00339 * 82.57504 * 15 14 13 17 17 C 1.50706 * 111.00109 * 206.38518 * 15 14 13 18 18 H 1.07998 * 120.00016 * 0.02562 * 17 15 14 19 19 C 1.37874 * 119.99571 * 179.97438 * 17 15 14 20 20 N 1.31517 * 120.00321 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99520 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47014 * 90.00743 * 21 19 17 23 23 H 1.48504 * 109.46772 * 210.00115 * 21 19 17 24 24 H 1.48498 * 109.47167 * 329.99896 * 21 19 17 25 25 C 1.47425 * 125.64645 * 179.71742 * 12 10 8 26 26 C 1.46925 * 118.71393 * 53.35543 * 7 6 5 27 27 H 1.09003 * 109.47496 * 299.91474 * 1 2 3 28 28 H 1.08998 * 109.47529 * 59.91946 * 1 2 3 29 29 H 1.09006 * 109.46704 * 179.97438 * 1 2 3 30 30 H 0.96699 * 114.00064 * 60.07707 * 3 2 1 31 31 H 1.08992 * 109.46154 * 298.69665 * 4 2 1 32 32 H 1.08997 * 109.46085 * 58.66165 * 4 2 1 33 33 H 1.08994 * 109.49717 * 181.31596 * 5 4 2 34 34 H 1.09004 * 109.49880 * 301.41387 * 5 4 2 35 35 H 1.08990 * 109.59240 * 65.15461 * 6 5 4 36 36 H 1.09000 * 109.58727 * 185.58003 * 6 5 4 37 37 H 1.09005 * 109.88682 * 300.43627 * 13 12 10 38 38 H 1.08999 * 109.88513 * 61.45581 * 13 12 10 39 39 H 1.08998 * 110.71753 * 140.55653 * 14 13 12 40 40 H 1.08994 * 110.71637 * 263.65323 * 14 13 12 41 41 H 0.96700 * 113.99306 * 179.97438 * 16 15 14 42 42 H 0.96996 * 119.99621 * 179.97438 * 20 19 17 43 43 H 1.08994 * 110.36548 * 274.74553 * 25 12 10 44 44 H 1.09003 * 110.36944 * 37.06952 * 25 12 10 45 45 H 1.09005 * 109.58637 * 186.78334 * 26 7 6 46 46 H 1.08997 * 109.58361 * 66.50422 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0075 1.3469 0.0000 4 6 2.0408 -0.7230 -1.2483 5 6 3.5709 -0.6949 -1.2660 6 6 4.1053 -1.4265 -0.0308 7 7 3.5045 -0.8320 1.1714 8 6 4.2806 -0.3910 2.1812 9 8 3.7886 0.2393 3.0940 10 6 5.7473 -0.6782 2.1767 11 8 6.2196 -1.4104 1.3322 12 7 6.5453 -0.1239 3.1108 13 6 6.1072 0.7768 4.1870 14 6 7.3633 1.1765 4.9897 15 6 8.5145 0.9301 3.9790 16 8 8.6631 2.0400 3.0913 17 6 9.8081 0.6376 4.6947 18 1 9.8365 0.6218 5.7742 19 6 10.9552 0.3891 3.9712 20 7 10.9206 0.4079 2.6566 21 14 12.5585 0.0258 4.8583 22 1 12.6801 -1.4372 5.0816 23 1 13.6990 0.4968 4.0320 24 1 12.5710 0.7292 6.1661 25 6 8.0011 -0.3255 3.2263 26 6 2.0413 -0.7237 1.2496 27 1 -0.3634 0.5125 0.8908 28 1 -0.3634 0.5151 -0.8892 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7236 1.8649 0.7656 31 1 1.6968 -1.7572 -1.2353 32 1 1.6581 -0.2244 -2.1389 33 1 3.9334 -1.1895 -2.1671 34 1 3.9159 0.3391 -1.2541 35 1 3.8377 -2.4816 -0.0867 36 1 5.1896 -1.3244 0.0137 37 1 5.6417 1.6653 3.7604 38 1 5.3983 0.2621 4.8356 39 1 7.3198 2.2273 5.2759 40 1 7.4765 0.5430 5.8693 41 1 9.3710 1.9319 2.4416 42 1 11.7277 0.2334 2.1477 43 1 8.2149 -1.2279 3.7990 44 1 8.4554 -0.3864 2.2373 45 1 1.7638 -0.1579 2.1389 46 1 1.6034 -1.7206 1.2994 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329453401.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:17 Heat of formation + Delta-G solvation = -173.240259 kcal Electronic energy + Delta-G solvation = -29651.790276 eV Core-core repulsion = 25541.020280 eV Total energy + Delta-G solvation = -4110.769996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.14185 -40.60369 -39.30810 -38.94727 -36.81194 -35.98275 -34.17035 -33.63643 -32.43065 -31.98660 -29.78032 -28.50491 -27.59535 -26.80760 -24.85088 -23.40963 -23.12499 -21.53021 -21.15326 -20.24755 -19.19596 -18.25038 -18.21127 -17.76422 -17.15634 -17.11316 -16.83813 -16.30105 -16.00077 -15.91360 -15.46373 -15.27081 -15.01500 -14.78822 -14.70631 -14.52362 -14.10838 -13.90102 -13.70858 -13.51192 -13.39671 -13.21391 -13.03829 -12.84478 -12.67397 -12.60623 -12.56283 -12.33071 -12.24785 -12.14733 -12.00949 -11.76478 -11.41828 -11.24790 -11.16255 -10.66028 -10.40945 -10.25246 -9.76712 -9.57731 -8.26848 -6.43605 0.30616 1.20492 1.43854 1.46172 1.55884 2.06890 2.31939 2.41080 2.98791 3.09933 3.29390 3.61988 3.75449 3.81027 3.83281 4.04439 4.06903 4.13680 4.26858 4.29978 4.39787 4.54361 4.61623 4.64512 4.68923 4.72350 4.79938 4.87748 4.89912 4.97692 5.03577 5.04302 5.10953 5.20694 5.27308 5.31997 5.38106 5.40210 5.41639 5.74453 5.94629 6.01233 6.28491 6.57023 6.65933 6.79143 6.88855 7.28676 7.38042 8.79247 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.026734 B = 0.003091 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.092142 B = 9055.366534 C = 9478.768809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 O -0.574 6.574 4 C -0.105 4.105 5 C -0.127 4.127 6 C 0.068 3.932 7 N -0.570 5.570 8 C 0.514 3.486 9 O -0.535 6.535 10 C 0.500 3.500 11 O -0.546 6.546 12 N -0.580 5.580 13 C 0.120 3.880 14 C -0.115 4.115 15 C 0.234 3.766 16 O -0.591 6.591 17 C -0.555 4.555 18 H 0.072 0.928 19 C 0.027 3.973 20 N -0.917 5.917 21 Si 0.968 3.032 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.267 1.267 25 C 0.104 3.896 26 C 0.079 3.921 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.384 0.616 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.379 0.621 42 H 0.272 0.728 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.985 -3.836 -5.068 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.073 3.927 3 O -0.381 6.381 4 C -0.142 4.142 5 C -0.165 4.165 6 C -0.054 4.054 7 N -0.302 5.302 8 C 0.297 3.703 9 O -0.413 6.413 10 C 0.285 3.715 11 O -0.427 6.427 12 N -0.311 5.311 13 C -0.002 4.002 14 C -0.153 4.153 15 C 0.193 3.807 16 O -0.400 6.400 17 C -0.593 4.593 18 H 0.090 0.910 19 C -0.174 4.174 20 N -0.557 5.557 21 Si 0.793 3.207 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.191 1.191 25 C -0.018 4.018 26 C -0.043 4.043 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.233 0.767 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.230 0.770 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.182 -3.894 -5.426 21.258 hybrid contribution 1.462 -0.191 0.351 1.516 sum -18.720 -4.085 -5.074 19.821 Atomic orbital electron populations 1.22355 0.92500 1.04261 1.03405 1.21710 0.94240 0.82228 0.94506 1.86555 1.78026 1.23647 1.49905 1.21615 0.94745 1.01223 0.96621 1.21818 0.96727 1.00425 0.97562 1.22842 1.02261 0.97493 0.82756 1.47851 1.07117 1.58157 1.17090 1.19782 0.86845 0.80229 0.83487 1.90673 1.74783 1.38989 1.36812 1.20270 0.88069 0.81595 0.81588 1.90462 1.76467 1.38930 1.36882 1.48706 1.09598 1.44554 1.28284 1.22140 0.96964 0.92907 0.88161 1.22728 0.92200 1.02720 0.97648 1.19881 0.92785 0.81774 0.86253 1.86083 1.59349 1.44275 1.50287 1.21792 0.93868 1.49513 0.94129 0.91006 1.25834 1.02570 0.93364 0.95624 1.69666 1.30439 1.49341 1.06232 0.85403 0.78310 0.78398 0.78605 1.20073 1.20926 1.19093 1.23149 0.76593 1.01002 1.01079 1.22720 0.77854 1.03327 1.00350 0.91362 0.91132 0.89575 0.76733 0.88110 0.90326 0.88861 0.93521 0.89519 0.87121 0.91762 0.89622 0.89743 0.88780 0.77049 0.91844 0.92152 0.92783 0.89103 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 8.82 71.98 0.64 -1.10 16 2 C 0.11 1.91 1.01 -10.72 -0.01 1.90 16 3 O -0.57 -12.69 12.18 -148.98 -1.81 -14.50 16 4 C -0.10 -1.65 4.92 30.62 0.15 -1.50 16 5 C -0.13 -2.74 5.94 30.67 0.18 -2.56 16 6 C 0.07 1.75 5.97 86.35 0.52 2.27 16 7 N -0.57 -15.74 2.92 -820.40 -2.40 -18.13 16 8 C 0.51 18.02 7.69 87.27 0.67 18.69 16 9 O -0.53 -19.31 13.60 -3.21 -0.04 -19.35 16 10 C 0.50 20.68 7.77 87.27 0.68 21.36 16 11 O -0.55 -23.94 13.44 -3.24 -0.04 -23.99 16 12 N -0.58 -25.11 3.32 -812.91 -2.70 -27.81 16 13 C 0.12 4.64 5.50 86.73 0.48 5.12 16 14 C -0.12 -4.64 6.12 31.79 0.19 -4.45 16 15 C 0.23 11.46 0.89 -10.07 -0.01 11.45 16 16 O -0.59 -31.19 13.19 -148.98 -1.97 -33.16 16 17 C -0.55 -28.60 8.25 25.60 0.21 -28.39 16 18 H 0.07 3.57 7.77 -2.91 -0.02 3.55 16 19 C 0.03 1.38 5.30 84.65 0.45 1.83 16 20 N -0.92 -49.05 10.72 21.45 0.23 -48.82 16 21 Si 0.97 41.13 29.54 68.60 2.03 43.15 16 22 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 C 0.10 5.06 5.64 86.93 0.49 5.55 16 26 C 0.08 1.54 5.36 86.36 0.46 2.01 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.38 6.70 9.05 -74.06 -0.67 6.03 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.05 1.28 7.61 -2.39 -0.02 1.26 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 3.73 4.33 -46.15 -0.20 3.53 16 37 H 0.06 2.52 7.74 -2.38 -0.02 2.50 16 38 H 0.09 2.98 7.55 -2.39 -0.02 2.96 16 39 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.09 3.45 8.02 -2.39 -0.02 3.43 16 41 H 0.38 20.81 6.93 -74.06 -0.51 20.30 16 42 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 43 H 0.06 2.96 8.04 -2.39 -0.02 2.94 16 44 H 0.05 2.95 7.64 -2.39 -0.02 2.93 16 45 H 0.09 1.90 7.01 -2.38 -0.02 1.88 16 46 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -64.00 362.69 -1.97 -65.97 By element: Atomic # 1 Polarization: 44.85 SS G_CDS: -0.36 Total: 44.49 kcal Atomic # 6 Polarization: 27.06 SS G_CDS: 5.10 Total: 32.16 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -4.87 Total: -94.77 kcal Atomic # 8 Polarization: -87.13 SS G_CDS: -3.87 Total: -91.00 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -64.00 -1.97 -65.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329453401.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.267 kcal (2) G-P(sol) polarization free energy of solvation -63.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds