Wall clock time and date at job start Fri Apr 10 2020 18:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99658 * 2 1 4 4 H 1.48505 * 109.46957 * 269.99647 * 3 2 1 5 5 H 1.48496 * 109.47170 * 30.00264 * 3 2 1 6 6 H 1.48507 * 109.47073 * 150.00165 * 3 2 1 7 7 C 1.37877 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00221 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.64320 * 59.28984 * 9 7 2 11 11 C 1.55153 * 110.72257 * 182.43589 * 9 7 2 12 12 C 1.55389 * 101.36930 * 153.94266 * 11 9 7 13 13 N 1.47431 * 104.87282 * 323.01613 * 12 11 9 14 14 C 1.34774 * 125.65148 * 204.16352 * 13 12 11 15 15 O 1.21348 * 120.00208 * 179.97438 * 14 13 12 16 16 C 1.49455 * 119.99480 * 359.96672 * 14 13 12 17 17 O 1.21341 * 120.00112 * 352.99073 * 16 14 13 18 18 N 1.34780 * 119.99748 * 173.00105 * 16 14 13 19 19 C 1.46932 * 120.62734 * 1.60402 * 18 16 14 20 20 C 1.52756 * 109.00971 * 233.58889 * 19 18 16 21 21 C 1.53046 * 109.38420 * 305.59366 * 20 19 18 22 22 C 1.52999 * 109.45937 * 181.25825 * 21 20 19 23 23 O 1.42900 * 109.47143 * 64.93305 * 22 21 20 24 24 C 1.53042 * 109.53636 * 61.24161 * 21 20 19 25 25 C 1.46922 * 120.63094 * 181.89604 * 18 16 14 26 26 C 1.47026 * 108.70244 * 24.13177 * 13 12 11 27 27 H 0.96998 * 120.00357 * 359.97438 * 1 2 3 28 28 H 0.96696 * 113.99887 * 300.70224 * 10 9 7 29 29 H 1.09000 * 111.00688 * 272.11105 * 11 9 7 30 30 H 1.09005 * 111.00625 * 35.96738 * 11 9 7 31 31 H 1.08999 * 110.34375 * 204.16938 * 12 11 9 32 32 H 1.08997 * 110.44421 * 81.91455 * 12 11 9 33 33 H 1.08997 * 109.58798 * 353.42655 * 19 18 16 34 34 H 1.09004 * 109.58165 * 113.85627 * 19 18 16 35 35 H 1.09001 * 109.56845 * 185.55972 * 20 19 18 36 36 H 1.09002 * 109.38976 * 65.52026 * 20 19 18 37 37 H 1.09000 * 109.45027 * 301.22520 * 21 20 19 38 38 H 1.09000 * 109.47182 * 184.93023 * 22 21 20 39 39 H 1.09005 * 109.47512 * 304.93289 * 22 21 20 40 40 H 0.96703 * 114.00206 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.49609 * 178.68753 * 24 21 20 42 42 H 1.08997 * 109.52634 * 58.60147 * 24 21 20 43 43 H 1.08999 * 109.58699 * 246.14830 * 25 18 16 44 44 H 1.09002 * 109.58523 * 6.42931 * 25 18 16 45 45 H 1.08997 * 109.88079 * 239.52246 * 26 13 12 46 46 H 1.09002 * 110.01071 * 118.42973 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 8 0.4083 -2.5943 -1.1495 11 6 2.2323 -3.6994 0.0629 12 6 1.3422 -4.7887 0.7229 13 7 0.5228 -4.0613 1.7094 14 6 -0.0437 -4.5976 2.8084 15 8 -0.7003 -3.9008 3.5540 16 6 0.1366 -6.0505 3.1085 17 8 0.6831 -6.7735 2.3017 18 7 -0.3081 -6.5578 4.2754 19 6 -1.0031 -5.7024 5.2470 20 6 -0.3100 -5.8247 6.6028 21 6 -0.2352 -7.2998 7.0038 22 6 0.4305 -7.4218 8.3760 23 8 -0.3958 -6.8016 9.3632 24 6 0.5866 -8.0706 5.9681 25 6 -0.1014 -7.9751 4.6026 26 6 0.4267 -2.6536 1.2960 27 1 -0.4850 0.8400 0.0004 28 1 -0.2487 -1.8878 -1.2151 29 1 2.5462 -3.9998 -0.9368 30 1 3.0945 -3.4673 0.6882 31 1 1.9622 -5.5342 1.2208 32 1 0.7050 -5.2633 -0.0233 33 1 -0.9676 -4.6657 4.9123 34 1 -2.0406 -6.0234 5.3399 35 1 -0.8755 -5.2720 7.3531 36 1 0.6977 -5.4153 6.5323 37 1 -1.2420 -7.7148 7.0505 38 1 0.5633 -8.4751 8.6230 39 1 1.4023 -6.9285 8.3536 40 1 -0.0351 -6.8415 10.2595 41 1 0.6591 -9.1165 6.2665 42 1 1.5860 -7.6407 5.9028 43 1 -1.0638 -8.4852 4.6419 44 1 0.5267 -8.4380 3.8415 45 1 0.8358 -2.0099 2.0747 46 1 -0.6140 -2.3906 1.1067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332355912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:46 Heat of formation + Delta-G solvation = -149.303750 kcal Electronic energy + Delta-G solvation = -29092.413105 eV Core-core repulsion = 24982.681075 eV Total energy + Delta-G solvation = -4109.732031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77864 -39.05700 -37.98345 -37.40179 -36.49633 -34.42470 -33.13477 -32.23465 -31.23199 -30.20516 -28.03012 -27.76177 -25.85789 -24.23547 -23.47494 -22.73579 -21.60091 -20.32843 -19.61078 -18.96516 -17.60494 -17.24550 -16.89325 -16.70582 -15.95011 -15.61655 -15.28977 -15.21497 -14.78982 -14.66525 -14.46431 -14.14891 -13.73228 -13.60468 -13.11803 -13.02614 -12.96499 -12.80352 -12.59038 -12.39401 -12.25134 -11.75563 -11.55489 -11.40591 -11.24731 -11.09296 -11.06089 -10.88040 -10.73922 -10.63157 -10.50796 -10.43482 -10.24380 -10.06956 -9.34792 -8.78539 -8.75094 -8.64101 -8.34724 -8.07172 -6.32839 -4.41449 1.74471 2.55068 3.19363 3.27031 3.29600 3.51465 3.72061 3.87183 4.24055 4.43923 4.51239 4.60752 4.81813 4.93583 4.95563 5.10174 5.12073 5.22582 5.32280 5.39957 5.45241 5.63047 5.66520 5.70478 5.79912 5.81047 5.85632 5.97384 6.01081 6.13739 6.21979 6.28526 6.44628 6.49451 6.73934 6.79627 6.86236 7.15892 7.21034 7.29518 7.30939 7.69253 7.78249 7.98475 8.04917 8.39610 8.62423 9.26847 9.37004 10.74982 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.003004 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.749702 B = 9320.161856 C =10149.876038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.121 4.121 12 C 0.101 3.899 13 N -0.570 5.570 14 C 0.509 3.491 15 O -0.526 6.526 16 C 0.512 3.488 17 O -0.522 6.522 18 N -0.584 5.584 19 C 0.045 3.955 20 C -0.122 4.122 21 C -0.091 4.091 22 C 0.081 3.919 23 O -0.572 6.572 24 C -0.126 4.126 25 C 0.109 3.891 26 C 0.098 3.902 27 H 0.271 0.729 28 H 0.384 0.616 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.164 0.836 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.378 0.622 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 -14.415 13.703 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.393 6.393 11 C -0.159 4.159 12 C -0.021 4.021 13 N -0.301 5.301 14 C 0.293 3.707 15 O -0.407 6.407 16 C 0.295 3.705 17 O -0.398 6.398 18 N -0.319 5.319 19 C -0.075 4.075 20 C -0.160 4.160 21 C -0.109 4.109 22 C 0.003 3.997 23 O -0.377 6.377 24 C -0.165 4.165 25 C -0.013 4.013 26 C -0.023 4.023 27 H 0.081 0.919 28 H 0.235 0.765 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.180 0.820 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.224 0.776 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.200 -14.753 13.041 19.692 hybrid contribution 0.339 1.119 0.836 1.437 sum 0.539 -13.635 13.877 19.462 Atomic orbital electron populations 1.69634 1.06009 1.28046 1.49765 1.25086 0.95075 0.99829 0.93312 0.86379 0.79779 0.82299 0.78327 1.20354 1.20980 1.19689 1.21518 0.93763 0.89978 1.52265 0.91390 1.19508 0.86194 0.92348 0.81222 1.86115 1.51701 1.54945 1.46520 1.22913 0.97491 0.94930 1.00537 1.22692 0.93544 0.95024 0.90850 1.48722 1.47017 1.13077 1.21262 1.19629 0.81488 0.87712 0.81897 1.90232 1.41788 1.62217 1.46489 1.20262 0.79126 0.89006 0.82110 1.90693 1.41898 1.60742 1.46452 1.47976 1.56159 1.10252 1.17470 1.23305 0.94592 1.01766 0.87844 1.21824 1.01782 0.95323 0.97112 1.21195 1.00132 0.97239 0.92379 1.22227 0.93087 0.95854 0.88514 1.86491 1.50021 1.81303 1.19885 1.21888 0.99662 1.00598 0.94323 1.21636 1.01112 0.81757 0.96803 1.23290 1.02401 0.76912 0.99702 0.91890 0.76493 0.90199 0.90475 0.89932 0.91087 0.81978 0.91912 0.89910 0.91885 0.90304 0.93814 0.93631 0.77566 0.90520 0.91177 0.91200 0.88637 0.90817 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.27 10.96 55.43 0.61 -22.67 16 2 C 0.07 1.79 5.27 -17.82 -0.09 1.70 16 3 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -13.77 8.11 -34.44 -0.28 -14.05 16 8 H 0.07 1.72 7.77 -52.49 -0.41 1.31 16 9 C 0.25 5.92 0.85 -89.94 -0.08 5.85 16 10 O -0.58 -14.59 13.07 -35.23 -0.46 -15.05 16 11 C -0.12 -2.45 6.26 -24.32 -0.15 -2.60 16 12 C 0.10 1.95 5.97 -2.26 -0.01 1.93 16 13 N -0.57 -11.91 3.33 -170.71 -0.57 -12.48 16 14 C 0.51 10.04 7.83 -11.58 -0.09 9.95 16 15 O -0.53 -10.87 13.35 5.50 0.07 -10.80 16 16 C 0.51 8.83 7.70 -11.58 -0.09 8.74 16 17 O -0.52 -9.52 13.32 5.50 0.07 -9.45 16 18 N -0.58 -8.25 2.98 -173.54 -0.52 -8.76 16 19 C 0.05 0.61 6.20 -3.93 -0.02 0.58 16 20 C -0.12 -1.39 5.26 -26.83 -0.14 -1.53 16 21 C -0.09 -0.85 2.39 -90.57 -0.22 -1.06 16 22 C 0.08 0.64 6.43 37.16 0.24 0.88 16 23 O -0.57 -4.92 13.17 -35.23 -0.46 -5.39 16 24 C -0.13 -1.11 5.36 -26.61 -0.14 -1.25 16 25 C 0.11 1.19 6.43 -3.71 -0.02 1.17 16 26 C 0.10 2.30 5.38 -3.06 -0.02 2.29 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.38 9.79 7.23 45.56 0.33 10.12 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 31 H 0.08 1.49 6.36 -51.93 -0.33 1.16 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.16 2.63 3.79 -56.97 -0.22 2.42 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.95 7.79 -51.93 -0.40 0.55 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 1.55 9.12 45.56 0.42 1.96 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.10 1.11 7.01 -51.93 -0.36 0.74 16 45 H 0.07 1.85 7.81 -51.93 -0.41 1.44 16 46 H 0.07 1.84 7.99 -51.93 -0.42 1.43 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -29.14 363.11 -7.50 -36.65 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -5.58 Total: 14.82 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -1.12 Total: 12.59 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.48 Total: -43.91 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.78 Total: -40.69 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.14 -7.50 -36.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332355912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.657 kcal (2) G-P(sol) polarization free energy of solvation -29.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds