Wall clock time and date at job start Fri Apr 10 2020 18:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99906 * 2 1 4 4 H 1.48501 * 109.47364 * 239.99989 * 3 2 1 5 5 H 1.48506 * 109.47122 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46976 * 119.99771 * 3 2 1 7 7 C 1.37877 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00596 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99983 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.49825 * 299.93714 * 9 7 2 11 11 C 1.53040 * 109.49721 * 179.83881 * 9 7 2 12 12 C 1.53040 * 109.53587 * 178.68014 * 11 9 7 13 13 C 1.52761 * 109.38050 * 61.24317 * 12 11 9 14 14 N 1.46922 * 109.00901 * 305.58647 * 13 12 11 15 15 C 1.34781 * 120.62943 * 233.58451 * 14 13 12 16 16 O 1.21351 * 119.99643 * 181.66103 * 15 14 13 17 17 C 1.49441 * 119.99898 * 1.65760 * 15 14 13 18 18 O 1.21347 * 120.00113 * 353.05119 * 17 15 14 19 19 N 1.34784 * 119.99836 * 173.04894 * 17 15 14 20 20 C 1.47419 * 125.64931 * 180.02562 * 19 17 15 21 21 C 1.54906 * 104.83746 * 155.90674 * 20 19 17 22 22 H 1.09002 * 111.00284 * 278.89994 * 21 20 19 23 23 C 1.52997 * 111.00866 * 155.08234 * 21 20 19 24 24 O 1.42896 * 109.47366 * 66.45264 * 23 21 20 25 25 C 1.55162 * 101.57928 * 37.00435 * 21 20 19 26 26 H 1.08998 * 110.71996 * 206.13650 * 25 21 20 27 27 O 1.42905 * 110.71396 * 82.86403 * 25 21 20 28 28 C 1.47016 * 125.64945 * 0.04380 * 19 17 15 29 29 C 1.46929 * 118.74185 * 53.31077 * 14 13 12 30 30 H 0.96994 * 120.00335 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.45876 * 298.70471 * 11 9 7 32 32 H 1.09007 * 109.45938 * 58.66508 * 11 9 7 33 33 H 1.08998 * 109.49558 * 181.31124 * 12 11 9 34 34 H 1.08995 * 109.50169 * 301.41413 * 12 11 9 35 35 H 1.08997 * 109.51000 * 185.69880 * 13 12 11 36 36 H 1.09005 * 109.43286 * 65.41828 * 13 12 11 37 37 H 1.09002 * 110.36866 * 37.06192 * 20 19 17 38 38 H 1.09002 * 110.36549 * 274.74492 * 20 19 17 39 39 H 1.09003 * 109.46972 * 306.45555 * 23 21 20 40 40 H 1.08999 * 109.47506 * 186.45710 * 23 21 20 41 41 H 0.96698 * 114.00213 * 180.02562 * 24 23 21 42 42 H 0.96707 * 113.99554 * 180.02562 * 27 25 21 43 43 H 1.09002 * 109.88412 * 300.44165 * 28 19 17 44 44 H 1.08995 * 109.88423 * 61.44773 * 28 19 17 45 45 H 1.08997 * 109.58762 * 66.42696 * 29 14 13 46 46 H 1.08994 * 109.59055 * 186.85802 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6254 -2.5581 0.8901 11 6 2.2450 -3.6629 -0.0052 12 6 1.4812 -4.9886 0.0280 13 6 0.6019 -5.0983 -1.2164 14 7 -0.2564 -3.9089 -1.3022 15 6 -1.5932 -4.0339 -1.4203 16 8 -2.2885 -3.0444 -1.5206 17 6 -2.2191 -5.3909 -1.4277 18 8 -1.5191 -6.3818 -1.4547 19 7 -3.5611 -5.5142 -1.4043 20 6 -4.3072 -6.7856 -1.4077 21 6 -5.6752 -6.4444 -0.7661 22 1 -5.6037 -6.4288 0.3215 23 6 -6.7569 -7.4231 -1.2276 24 8 -6.4681 -8.7269 -0.7191 25 6 -5.9363 -5.0216 -1.3274 26 1 -6.5840 -4.4558 -0.6578 27 8 -6.4994 -5.0911 -2.6389 28 6 -4.5232 -4.4031 -1.3716 29 6 0.3696 -2.5807 -1.2509 30 1 -0.4850 0.8400 -0.0004 31 1 2.8536 -3.6169 -0.9083 32 1 2.8898 -3.5933 0.8709 33 1 2.1899 -5.8164 0.0481 34 1 0.8535 -5.0246 0.9183 35 1 -0.0181 -5.9921 -1.1464 36 1 1.2336 -5.1578 -2.1027 37 1 -3.7847 -7.5338 -0.8116 38 1 -4.4453 -7.1417 -2.4286 39 1 -6.7776 -7.4544 -2.3170 40 1 -7.7271 -7.0945 -0.8551 41 1 -7.1139 -9.4002 -0.9733 42 1 -6.6813 -4.2278 -3.0351 43 1 -4.3568 -3.7946 -0.4826 44 1 -4.4123 -3.7902 -2.2661 45 1 0.9820 -2.4307 -2.1400 46 1 -0.4035 -1.8139 -1.2035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333451230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:54 Heat of formation + Delta-G solvation = -170.727303 kcal Electronic energy + Delta-G solvation = -29187.098033 eV Core-core repulsion = 25076.437007 eV Total energy + Delta-G solvation = -4110.661026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.14861 -40.56688 -39.28861 -38.54806 -37.43575 -36.41996 -35.20922 -33.52116 -32.76181 -31.61948 -29.86778 -28.25263 -27.09270 -26.41386 -24.38113 -23.64822 -23.10873 -21.38470 -21.19905 -20.25006 -18.99943 -18.46398 -18.29828 -18.04584 -17.56360 -17.33329 -17.01042 -16.49894 -16.07600 -15.78015 -15.56184 -15.40110 -15.09309 -14.94741 -14.74100 -14.56176 -14.43967 -14.40538 -13.92780 -13.80054 -13.49847 -13.30371 -13.12908 -12.86210 -12.72356 -12.49795 -12.30469 -12.17342 -12.00011 -11.88116 -11.73610 -11.53188 -11.27487 -11.08445 -10.98698 -10.81948 -10.55205 -10.08152 -9.92958 -9.55438 -8.12523 -6.29098 0.30019 1.17442 1.42064 1.43548 1.51379 2.08405 2.34673 2.42850 2.93978 3.12994 3.17387 3.18813 3.44640 3.62139 4.08837 4.12218 4.15618 4.17068 4.30412 4.32642 4.45114 4.52389 4.55901 4.59614 4.68600 4.70872 4.75407 4.79229 4.83941 4.90846 5.03347 5.06840 5.15861 5.20798 5.22856 5.30267 5.46039 5.55341 5.82195 5.91480 5.95987 6.26329 6.36990 6.60791 6.80549 6.81303 6.94754 6.95932 7.40466 8.91337 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.003152 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.796648 B = 8881.553380 C = 9955.091504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.040 3.960 10 H -0.010 1.010 11 C -0.107 4.107 12 C -0.123 4.123 13 C 0.048 3.952 14 N -0.574 5.574 15 C 0.489 3.511 16 O -0.548 6.548 17 C 0.526 3.474 18 O -0.524 6.524 19 N -0.585 5.585 20 C 0.116 3.884 21 C -0.092 4.092 22 H 0.107 0.893 23 C 0.101 3.899 24 O -0.595 6.595 25 C 0.114 3.886 26 H 0.116 0.884 27 O -0.564 6.564 28 C 0.072 3.928 29 C 0.122 3.878 30 H 0.262 0.738 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.153 0.847 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.400 0.600 42 H 0.401 0.599 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.278 -14.572 -3.603 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.187 4.187 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.021 3.979 10 H 0.008 0.992 11 C -0.145 4.145 12 C -0.161 4.161 13 C -0.072 4.072 14 N -0.305 5.305 15 C 0.271 3.729 16 O -0.427 6.427 17 C 0.311 3.689 18 O -0.404 6.404 19 N -0.317 5.317 20 C -0.005 4.005 21 C -0.111 4.111 22 H 0.125 0.875 23 C 0.023 3.977 24 O -0.404 6.404 25 C 0.054 3.946 26 H 0.134 0.866 27 O -0.373 6.373 28 C -0.050 4.050 29 C 0.001 3.999 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.169 0.831 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.250 0.750 42 H 0.253 0.747 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.784 -14.749 -3.331 21.147 hybrid contribution 0.248 1.762 -0.274 1.801 sum -14.536 -12.987 -3.605 19.823 Atomic orbital electron populations 1.70035 1.07284 1.27495 1.50328 1.25869 0.95661 1.02804 0.94382 0.85589 0.78296 0.78669 0.78978 1.19359 1.21152 1.19502 1.21446 0.93311 0.91282 1.51562 0.91986 1.18891 0.93031 0.93862 0.92088 0.99232 1.21563 0.97779 0.94102 1.01013 1.21802 0.98736 0.98367 0.97174 1.23253 0.95325 0.89957 0.98670 1.48469 1.05111 1.09921 1.67006 1.20233 0.83643 0.89489 0.79551 1.90704 1.61744 1.39803 1.50431 1.19844 0.82269 0.89059 0.77765 1.90256 1.58904 1.39873 1.51382 1.48322 1.03769 1.10638 1.68993 1.22456 0.91524 0.84707 1.01780 1.22508 0.93497 0.93828 1.01301 0.87477 1.21800 0.95996 0.81823 0.98035 1.86424 1.55885 1.19842 1.78279 1.22760 0.90743 0.95072 0.86067 0.86638 1.86423 1.83727 1.36827 1.30348 1.23163 0.89103 0.88995 1.03771 1.21967 0.97574 0.81784 0.98568 0.92894 0.92474 0.92689 0.88283 0.93504 0.83085 0.91117 0.90441 0.90422 0.92293 0.91120 0.75001 0.74712 0.90694 0.90252 0.93904 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.12 11.39 21.45 0.24 -53.88 16 2 C 0.01 0.70 5.30 84.66 0.45 1.15 16 3 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -29.74 8.56 25.60 0.22 -29.52 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 9 C 0.04 2.09 2.25 -11.46 -0.03 2.06 16 10 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 11 C -0.11 -4.43 5.11 30.62 0.16 -4.27 16 12 C -0.12 -4.32 6.06 30.53 0.19 -4.13 16 13 C 0.05 1.76 6.20 86.22 0.53 2.30 16 14 N -0.57 -25.18 2.98 -821.32 -2.45 -27.62 16 15 C 0.49 20.93 7.71 87.26 0.67 21.60 16 16 O -0.55 -25.77 13.59 -3.25 -0.04 -25.81 16 17 C 0.53 19.01 7.83 87.26 0.68 19.69 16 18 O -0.52 -19.24 13.28 -3.24 -0.04 -19.28 16 19 N -0.58 -17.09 3.33 -813.42 -2.71 -19.79 16 20 C 0.12 2.73 6.23 86.85 0.54 3.27 16 21 C -0.09 -1.57 3.25 -9.40 -0.03 -1.60 16 22 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 23 C 0.10 1.35 6.10 71.98 0.44 1.78 16 24 O -0.60 -8.65 13.51 -148.98 -2.01 -10.67 16 25 C 0.11 1.74 4.09 31.78 0.13 1.87 16 26 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 27 O -0.56 -7.77 12.10 -148.98 -1.80 -9.57 16 28 C 0.07 1.78 5.26 86.73 0.46 2.24 16 29 C 0.12 6.24 5.40 86.36 0.47 6.70 16 30 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.15 5.43 3.79 -82.25 -0.31 5.12 16 36 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.08 1.98 8.04 -2.39 -0.02 1.96 16 38 H 0.08 1.81 8.00 -2.39 -0.02 1.79 16 39 H 0.06 0.82 7.42 -2.39 -0.02 0.81 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.40 2.09 9.12 -74.06 -0.68 1.42 16 42 H 0.40 2.76 9.12 -74.05 -0.68 2.08 16 43 H 0.07 2.07 7.74 -2.39 -0.02 2.06 16 44 H 0.08 2.13 7.48 -2.39 -0.02 2.11 16 45 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.09 5.14 5.13 -2.39 -0.01 5.13 16 Total: -1.00 -73.42 363.70 -2.54 -75.96 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.63 Total: 21.70 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: 4.88 Total: 23.15 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -4.91 Total: -101.29 kcal Atomic # 8 Polarization: -61.43 SS G_CDS: -3.90 Total: -65.33 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -73.42 -2.54 -75.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333451230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.768 kcal (2) G-P(sol) polarization free energy of solvation -73.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds