Wall clock time and date at job start Fri Apr 10 2020 18:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.55274 * 2 1 4 4 C 1.54998 * 110.61356 * 237.12397 * 2 1 3 5 5 C 1.54808 * 102.09064 * 204.31720 * 4 2 1 6 6 C 1.54104 * 104.19011 * 20.88211 * 5 4 2 7 7 H 1.08997 * 109.88234 * 242.45571 * 6 5 4 8 8 C 1.53000 * 109.87791 * 121.45025 * 6 5 4 9 9 N 1.46499 * 109.46840 * 180.02562 * 8 6 5 10 10 C 1.34779 * 119.99872 * 180.02562 * 9 8 6 11 11 O 1.21345 * 120.00289 * 0.02562 * 10 9 8 12 12 C 1.49450 * 119.99981 * 180.02562 * 10 9 8 13 13 O 1.21353 * 120.00232 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99981 * 180.02562 * 12 10 9 15 15 C 1.47015 * 125.65000 * 359.69434 * 14 12 10 16 16 C 1.54333 * 107.26709 * 178.84854 * 15 14 12 17 17 C 1.55152 * 103.01924 * 338.13906 * 16 15 14 18 18 O 1.42897 * 111.00621 * 277.23309 * 17 16 15 19 19 C 1.50709 * 111.00248 * 153.37914 * 17 16 15 20 20 H 1.08004 * 119.99810 * 6.35473 * 19 17 16 21 21 C 1.37873 * 119.99820 * 186.34843 * 19 17 16 22 22 N 1.31513 * 120.00439 * 0.02562 * 21 19 17 23 23 Si 1.86804 * 119.99816 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47002 * 60.00059 * 23 21 19 25 25 H 1.48498 * 109.47133 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47039 * 300.00430 * 23 21 19 27 27 C 1.47425 * 125.64620 * 180.02562 * 14 12 10 28 28 O 1.43748 * 107.28822 * 2.02938 * 6 5 4 29 29 H 1.08997 * 109.47575 * 182.87676 * 1 2 3 30 30 H 1.09005 * 109.46527 * 302.87261 * 1 2 3 31 31 H 1.09001 * 109.47151 * 62.87306 * 1 2 3 32 32 H 1.08999 * 110.90653 * 86.12210 * 4 2 1 33 33 H 1.09003 * 110.93792 * 322.53274 * 4 2 1 34 34 H 1.09002 * 110.49294 * 262.20570 * 5 4 2 35 35 H 1.09006 * 110.48994 * 139.55668 * 5 4 2 36 36 H 1.09002 * 109.47398 * 300.00372 * 8 6 5 37 37 H 1.09001 * 109.47194 * 60.00552 * 8 6 5 38 38 H 0.97000 * 120.00420 * 0.02562 * 9 8 6 39 39 H 1.09003 * 109.88479 * 298.39846 * 15 14 12 40 40 H 1.09000 * 109.88187 * 59.55567 * 15 14 12 41 41 H 1.09003 * 110.84848 * 219.67453 * 16 15 14 42 42 H 1.09004 * 110.66510 * 96.52573 * 16 15 14 43 43 H 0.96700 * 113.99888 * 173.65259 * 18 17 16 44 44 H 0.97001 * 120.00169 * 179.97438 * 22 21 19 45 45 H 1.09003 * 110.37061 * 322.92946 * 27 14 12 46 46 H 1.09005 * 110.36871 * 85.14416 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0757 -0.7875 -1.2184 5 6 3.4810 -1.2121 -0.7271 6 6 3.3875 -1.1220 0.8085 7 1 4.0897 -0.3754 1.1794 8 6 3.7008 -2.4846 1.4297 9 7 3.6089 -2.3889 2.8886 10 6 3.8465 -3.4743 3.6515 11 8 4.1371 -4.5307 3.1299 12 6 3.7521 -3.3769 5.1398 13 8 3.4611 -2.3206 5.6615 14 7 3.9902 -4.4622 5.9027 15 6 4.3444 -5.7990 5.4040 16 6 4.5493 -6.7076 6.6347 17 6 4.8447 -5.6943 7.7719 18 8 6.2202 -5.3070 7.7684 19 6 4.4473 -6.2562 9.1127 20 1 4.1160 -7.2811 9.1920 21 6 4.5069 -5.4618 10.2380 22 7 4.9100 -4.2137 10.1414 23 14 4.0151 -6.1585 11.9001 24 1 4.8873 -7.3142 12.2301 25 1 4.1669 -5.1101 12.9407 26 1 2.5996 -6.6049 11.8504 27 6 3.9319 -4.5069 7.3751 28 8 2.0416 -0.7349 1.1325 29 1 -0.3634 -1.0263 0.0516 30 1 -0.3632 0.5578 0.8632 31 1 -0.3633 0.4686 -0.9146 32 1 2.1482 -0.1451 -2.0960 33 1 1.4566 -1.6599 -1.4274 34 1 4.2402 -0.5268 -1.1039 35 1 3.7008 -2.2340 -1.0365 36 1 2.9841 -3.2221 1.0684 37 1 4.7088 -2.7892 1.1481 38 1 3.3769 -1.5444 3.3057 39 1 3.5378 -6.1889 4.7831 40 1 5.2673 -5.7467 4.8264 41 1 5.3960 -7.3776 6.4856 42 1 3.6435 -7.2748 6.8491 43 1 6.4323 -4.6037 8.3972 44 1 4.9516 -3.6548 10.9331 45 1 4.3131 -3.5776 7.7984 46 1 2.9095 -4.6838 7.7091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345891658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:09 Heat of formation + Delta-G solvation = -164.865240 kcal Electronic energy + Delta-G solvation = -28314.985760 eV Core-core repulsion = 24204.578932 eV Total energy + Delta-G solvation = -4110.406827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.44207 -39.84293 -38.34784 -37.12194 -35.17247 -34.10784 -32.64749 -32.23329 -32.03787 -30.18223 -28.47124 -27.82958 -25.86916 -24.54290 -23.19709 -21.80537 -21.52520 -21.45683 -19.73491 -19.35097 -17.42457 -17.13152 -17.06550 -16.38803 -16.35083 -15.62171 -15.54321 -15.13940 -14.87712 -14.48359 -14.32240 -14.24733 -13.92194 -13.35783 -13.10026 -13.02784 -12.85667 -12.76378 -12.47290 -12.32479 -12.23504 -12.06522 -11.68093 -11.60410 -11.46230 -11.26754 -11.06758 -11.04463 -11.01845 -10.76611 -10.54451 -10.48438 -10.19304 -10.01444 -9.35296 -9.17560 -9.08929 -8.68155 -8.38469 -7.86220 -6.27745 -4.37358 1.86400 2.68251 3.23162 3.28756 3.30733 3.35855 3.67293 3.96247 4.10972 4.25999 4.28323 4.47751 4.53922 4.76958 4.79932 4.93035 4.99642 5.01023 5.11235 5.18356 5.34873 5.36400 5.47486 5.52614 5.58054 5.69492 5.70451 5.81414 5.82371 5.86534 6.09404 6.22886 6.37606 6.54931 6.59693 6.75915 6.84239 6.88164 7.20098 7.29834 7.35899 7.73926 7.93188 8.03360 8.10789 8.50777 8.66539 9.29925 9.38394 10.79430 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.002415 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.339318 B =11591.015686 C =12080.424790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.070 0.930 4 C -0.151 4.151 5 C -0.149 4.149 6 C 0.064 3.936 7 H 0.078 0.922 8 C 0.123 3.877 9 N -0.702 5.702 10 C 0.510 3.490 11 O -0.520 6.520 12 C 0.508 3.492 13 O -0.537 6.537 14 N -0.575 5.575 15 C 0.112 3.888 16 C -0.122 4.122 17 C 0.249 3.751 18 O -0.581 6.581 19 C -0.537 4.537 20 H 0.067 0.933 21 C 0.071 3.929 22 N -0.894 5.894 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.275 1.275 27 C 0.092 3.908 28 O -0.365 6.365 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.415 0.585 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.381 0.619 44 H 0.271 0.729 45 H 0.091 0.909 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 7.513 -21.453 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.088 0.912 4 C -0.188 4.188 5 C -0.187 4.187 6 C 0.006 3.994 7 H 0.096 0.904 8 C -0.001 4.001 9 N -0.356 5.356 10 C 0.292 3.708 11 O -0.396 6.396 12 C 0.290 3.710 13 O -0.416 6.416 14 N -0.307 5.307 15 C -0.011 4.011 16 C -0.160 4.160 17 C 0.208 3.792 18 O -0.389 6.389 19 C -0.575 4.575 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.532 5.532 23 Si 0.732 3.268 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.029 4.029 28 O -0.284 6.284 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.252 0.748 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.230 0.770 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.702 7.008 -21.753 23.332 hybrid contribution -0.309 0.641 1.296 1.479 sum -5.010 7.649 -20.456 22.407 Atomic orbital electron populations 1.21775 0.93018 1.03197 1.02459 1.23146 0.95384 0.95287 0.84857 0.91165 1.23194 0.96071 1.01025 0.98554 1.22917 0.98142 1.03527 0.94099 1.22994 0.85715 0.95889 0.94799 0.90374 1.21648 1.02431 0.96361 0.79626 1.45627 1.69959 1.13617 1.06431 1.20411 0.77784 0.84036 0.88615 1.90716 1.45961 1.28113 1.74790 1.19556 0.80456 0.84116 0.86873 1.90728 1.48819 1.27830 1.74208 1.48654 1.63302 1.09214 1.09533 1.22133 1.00314 0.81842 0.96783 1.22711 1.01703 0.97632 0.93915 1.19635 0.79494 0.87975 0.92087 1.86130 1.27443 1.60175 1.65192 1.21425 1.45834 0.98756 0.91486 0.91439 1.25089 0.93749 0.94672 0.99756 1.69703 1.46418 1.06397 1.30701 0.86443 0.79175 0.78732 0.82442 1.19980 1.21105 1.20014 1.23488 1.01378 1.03703 0.74320 1.88973 1.26969 1.73513 1.38984 0.91646 0.91682 0.91144 0.90116 0.90213 0.90078 0.89773 0.90499 0.89864 0.74807 0.91784 0.91203 0.90555 0.90382 0.76970 0.91918 0.89107 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.66 37.16 0.36 -0.64 16 2 C 0.07 0.53 3.97 -25.67 -0.10 0.43 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.15 -0.89 6.59 -24.72 -0.16 -1.05 16 5 C -0.15 -0.91 6.64 -25.20 -0.17 -1.08 16 6 C 0.06 0.56 3.49 -26.15 -0.09 0.47 16 7 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 8 C 0.12 1.34 5.15 -4.04 -0.02 1.32 16 9 N -0.70 -9.96 5.47 -60.73 -0.33 -10.29 16 10 C 0.51 9.06 7.86 -11.58 -0.09 8.97 16 11 O -0.52 -9.76 14.12 5.50 0.08 -9.68 16 12 C 0.51 10.63 7.91 -11.58 -0.09 10.54 16 13 O -0.54 -12.22 16.73 5.49 0.09 -12.13 16 14 N -0.58 -12.55 3.33 -171.01 -0.57 -13.12 16 15 C 0.11 2.22 5.49 -3.06 -0.02 2.20 16 16 C -0.12 -2.52 6.13 -24.89 -0.15 -2.68 16 17 C 0.25 6.09 0.87 -89.61 -0.08 6.01 16 18 O -0.58 -14.93 13.16 -35.23 -0.46 -15.39 16 19 C -0.54 -13.96 8.27 -34.44 -0.28 -14.25 16 20 H 0.07 1.72 7.79 -52.48 -0.41 1.31 16 21 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 22 N -0.89 -23.72 10.69 55.43 0.59 -23.13 16 23 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.09 2.23 5.38 -2.52 -0.01 2.21 16 28 O -0.36 -3.87 10.75 -35.23 -0.38 -4.25 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.48 7.70 -51.93 -0.40 0.08 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.42 5.80 7.89 -40.82 -0.32 5.47 16 39 H 0.06 1.18 7.71 -51.93 -0.40 0.78 16 40 H 0.07 1.39 7.57 -51.93 -0.39 1.00 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.51 8.03 -51.93 -0.42 1.10 16 43 H 0.38 9.93 7.57 45.56 0.34 10.28 16 44 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 45 H 0.09 2.43 7.33 -51.93 -0.38 2.05 16 46 H 0.07 1.67 8.03 -51.93 -0.42 1.25 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -30.26 375.22 -7.93 -38.19 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -6.57 Total: 14.64 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: -1.01 Total: 14.19 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.31 Total: -46.54 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.67 Total: -41.45 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.26 -7.93 -38.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345891658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.672 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds