Wall clock time and date at job start Fri Apr 10 2020 18:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.55274 * 2 1 4 4 C 1.54998 * 110.61356 * 237.12397 * 2 1 3 5 5 C 1.54808 * 102.09064 * 204.31720 * 4 2 1 6 6 C 1.54104 * 104.19011 * 20.88211 * 5 4 2 7 7 H 1.08997 * 109.88234 * 242.45571 * 6 5 4 8 8 C 1.53000 * 109.87791 * 121.45025 * 6 5 4 9 9 N 1.46499 * 109.46840 * 180.02562 * 8 6 5 10 10 C 1.34779 * 119.99872 * 180.02562 * 9 8 6 11 11 O 1.21345 * 120.00289 * 0.02562 * 10 9 8 12 12 C 1.49450 * 119.99981 * 180.02562 * 10 9 8 13 13 O 1.21353 * 120.00232 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99981 * 180.02562 * 12 10 9 15 15 C 1.47015 * 125.65000 * 359.69434 * 14 12 10 16 16 C 1.54333 * 107.26709 * 178.84854 * 15 14 12 17 17 C 1.55152 * 103.01924 * 338.13906 * 16 15 14 18 18 O 1.42897 * 111.00621 * 277.23309 * 17 16 15 19 19 C 1.50709 * 111.00248 * 153.37914 * 17 16 15 20 20 H 1.08004 * 119.99810 * 6.35473 * 19 17 16 21 21 C 1.37873 * 119.99820 * 186.34843 * 19 17 16 22 22 N 1.31513 * 120.00439 * 0.02562 * 21 19 17 23 23 Si 1.86804 * 119.99816 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47002 * 60.00059 * 23 21 19 25 25 H 1.48498 * 109.47133 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47039 * 300.00430 * 23 21 19 27 27 C 1.47425 * 125.64620 * 180.02562 * 14 12 10 28 28 O 1.43748 * 107.28822 * 2.02938 * 6 5 4 29 29 H 1.08997 * 109.47575 * 182.87676 * 1 2 3 30 30 H 1.09005 * 109.46527 * 302.87261 * 1 2 3 31 31 H 1.09001 * 109.47151 * 62.87306 * 1 2 3 32 32 H 1.08999 * 110.90653 * 86.12210 * 4 2 1 33 33 H 1.09003 * 110.93792 * 322.53274 * 4 2 1 34 34 H 1.09002 * 110.49294 * 262.20570 * 5 4 2 35 35 H 1.09006 * 110.48994 * 139.55668 * 5 4 2 36 36 H 1.09002 * 109.47398 * 300.00372 * 8 6 5 37 37 H 1.09001 * 109.47194 * 60.00552 * 8 6 5 38 38 H 0.97000 * 120.00420 * 0.02562 * 9 8 6 39 39 H 1.09003 * 109.88479 * 298.39846 * 15 14 12 40 40 H 1.09000 * 109.88187 * 59.55567 * 15 14 12 41 41 H 1.09003 * 110.84848 * 219.67453 * 16 15 14 42 42 H 1.09004 * 110.66510 * 96.52573 * 16 15 14 43 43 H 0.96700 * 113.99888 * 173.65259 * 18 17 16 44 44 H 0.97001 * 120.00169 * 179.97438 * 22 21 19 45 45 H 1.09003 * 110.37061 * 322.92946 * 27 14 12 46 46 H 1.09005 * 110.36871 * 85.14416 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0757 -0.7875 -1.2184 5 6 3.4810 -1.2121 -0.7271 6 6 3.3875 -1.1220 0.8085 7 1 4.0897 -0.3754 1.1794 8 6 3.7008 -2.4846 1.4297 9 7 3.6089 -2.3889 2.8886 10 6 3.8465 -3.4743 3.6515 11 8 4.1371 -4.5307 3.1299 12 6 3.7521 -3.3769 5.1398 13 8 3.4611 -2.3206 5.6615 14 7 3.9902 -4.4622 5.9027 15 6 4.3444 -5.7990 5.4040 16 6 4.5493 -6.7076 6.6347 17 6 4.8447 -5.6943 7.7719 18 8 6.2202 -5.3070 7.7684 19 6 4.4473 -6.2562 9.1127 20 1 4.1160 -7.2811 9.1920 21 6 4.5069 -5.4618 10.2380 22 7 4.9100 -4.2137 10.1414 23 14 4.0151 -6.1585 11.9001 24 1 4.8873 -7.3142 12.2301 25 1 4.1669 -5.1101 12.9407 26 1 2.5996 -6.6049 11.8504 27 6 3.9319 -4.5069 7.3751 28 8 2.0416 -0.7349 1.1325 29 1 -0.3634 -1.0263 0.0516 30 1 -0.3632 0.5578 0.8632 31 1 -0.3633 0.4686 -0.9146 32 1 2.1482 -0.1451 -2.0960 33 1 1.4566 -1.6599 -1.4274 34 1 4.2402 -0.5268 -1.1039 35 1 3.7008 -2.2340 -1.0365 36 1 2.9841 -3.2221 1.0684 37 1 4.7088 -2.7892 1.1481 38 1 3.3769 -1.5444 3.3057 39 1 3.5378 -6.1889 4.7831 40 1 5.2673 -5.7467 4.8264 41 1 5.3960 -7.3776 6.4856 42 1 3.6435 -7.2748 6.8491 43 1 6.4323 -4.6037 8.3972 44 1 4.9516 -3.6548 10.9331 45 1 4.3131 -3.5776 7.7984 46 1 2.9095 -4.6838 7.7091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345891658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:08 Heat of formation + Delta-G solvation = -188.243084 kcal Electronic energy + Delta-G solvation = -28315.999499 eV Core-core repulsion = 24204.578932 eV Total energy + Delta-G solvation = -4111.420567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.84452 -40.71058 -39.87444 -38.87653 -36.52236 -35.74756 -34.24490 -33.23320 -32.78375 -31.95620 -29.75712 -29.24044 -27.57536 -25.76939 -24.51075 -23.05042 -22.35074 -22.12574 -21.54835 -20.79503 -19.16866 -18.79950 -18.09095 -17.60136 -17.42403 -17.07444 -16.84723 -16.70467 -16.30189 -16.02046 -15.71507 -15.13072 -14.89009 -14.74833 -14.66804 -14.64743 -13.97992 -13.95511 -13.70547 -13.52239 -13.32404 -13.21314 -12.92775 -12.81898 -12.74368 -12.58583 -12.53625 -12.35965 -12.26836 -12.18925 -12.11264 -11.76164 -11.57015 -11.21590 -10.75846 -10.67016 -10.58150 -10.38207 -10.31980 -9.65454 -8.24996 -6.42042 0.32513 1.26050 1.45432 1.46123 1.53975 2.10298 2.37127 2.47669 2.79574 3.00855 3.32233 3.52995 3.67793 3.76813 3.92543 4.00289 4.05208 4.14259 4.16222 4.31658 4.32040 4.46841 4.51709 4.56053 4.65243 4.72122 4.74066 4.87941 4.95383 4.97042 5.04769 5.05356 5.06617 5.13685 5.17057 5.22631 5.28353 5.32604 5.43166 5.74085 5.94902 5.99378 6.06278 6.35496 6.59815 6.67279 6.90451 7.26297 7.34585 8.80507 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.002415 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.339318 B =11591.015686 C =12080.424790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.079 0.921 4 C -0.145 4.145 5 C -0.144 4.144 6 C 0.064 3.936 7 H 0.085 0.915 8 C 0.120 3.880 9 N -0.686 5.686 10 C 0.517 3.483 11 O -0.530 6.530 12 C 0.500 3.500 13 O -0.562 6.562 14 N -0.583 5.583 15 C 0.119 3.881 16 C -0.115 4.115 17 C 0.234 3.766 18 O -0.587 6.587 19 C -0.556 4.556 20 H 0.070 0.930 21 C 0.027 3.973 22 N -0.915 5.915 23 Si 0.966 3.034 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.270 1.270 27 C 0.105 3.895 28 O -0.396 6.396 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.417 0.583 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.374 0.626 44 H 0.270 0.730 45 H 0.058 0.942 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 7.239 -23.373 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.004 3.996 3 H 0.097 0.903 4 C -0.183 4.183 5 C -0.182 4.182 6 C 0.006 3.994 7 H 0.103 0.897 8 C -0.003 4.003 9 N -0.339 5.339 10 C 0.297 3.703 11 O -0.407 6.407 12 C 0.284 3.716 13 O -0.443 6.443 14 N -0.314 5.314 15 C -0.003 4.003 16 C -0.153 4.153 17 C 0.193 3.807 18 O -0.395 6.395 19 C -0.594 4.594 20 H 0.089 0.911 21 C -0.174 4.174 22 N -0.554 5.554 23 Si 0.791 3.209 24 H -0.195 1.195 25 H -0.211 1.211 26 H -0.195 1.195 27 C -0.017 4.017 28 O -0.316 6.316 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.253 0.747 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.223 0.777 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.932 6.739 -23.724 25.151 hybrid contribution -0.261 0.803 1.853 2.037 sum -5.194 7.543 -21.871 23.711 Atomic orbital electron populations 1.21798 0.92856 1.02573 1.03156 1.23375 0.95660 0.95735 0.84803 0.90303 1.23188 0.95601 1.01024 0.98487 1.22937 0.98869 1.04521 0.91844 1.23067 0.85274 0.94510 0.96519 0.89746 1.21944 1.03149 0.98011 0.77147 1.45682 1.67940 1.12475 1.07814 1.19757 0.78657 0.84897 0.87012 1.90709 1.47163 1.28545 1.74330 1.20259 0.79400 0.83390 0.88557 1.90703 1.49693 1.28695 1.75183 1.48707 1.63698 1.10416 1.08627 1.22166 1.01064 0.80615 0.96422 1.22724 1.02759 0.97164 0.92643 1.19858 0.78746 0.88927 0.93137 1.86122 1.28449 1.59929 1.64962 1.21725 1.46114 0.99027 0.92495 0.91140 1.25827 0.93700 0.94915 1.02957 1.69818 1.46938 1.07280 1.31332 0.85487 0.78964 0.78001 0.78454 1.19547 1.21085 1.19461 1.23081 1.00380 1.02148 0.76086 1.88945 1.27858 1.74084 1.40755 0.92701 0.92724 0.88922 0.87954 0.90567 0.88172 0.89173 0.90807 0.88547 0.74661 0.89798 0.91108 0.89527 0.88933 0.77715 0.92038 0.92313 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.66 71.98 0.70 -1.15 16 2 C 0.06 0.82 3.97 31.28 0.12 0.95 16 3 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.15 -1.34 6.59 31.89 0.21 -1.13 16 5 C -0.14 -1.37 6.64 31.58 0.21 -1.16 16 6 C 0.06 1.01 3.49 30.97 0.11 1.11 16 7 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 8 C 0.12 2.41 5.15 86.38 0.44 2.86 16 9 N -0.69 -18.89 5.47 -464.41 -2.54 -21.43 16 10 C 0.52 18.00 7.86 87.27 0.69 18.68 16 11 O -0.53 -19.18 14.12 -3.23 -0.05 -19.22 16 12 C 0.50 21.11 7.91 87.27 0.69 21.80 16 13 O -0.56 -26.19 16.73 -3.25 -0.05 -26.24 16 14 N -0.58 -25.58 3.33 -813.30 -2.70 -28.28 16 15 C 0.12 4.60 5.49 86.73 0.48 5.08 16 16 C -0.12 -4.66 6.13 31.78 0.19 -4.46 16 17 C 0.23 11.51 0.87 -10.14 -0.01 11.51 16 18 O -0.59 -30.60 13.16 -148.98 -1.96 -32.56 16 19 C -0.56 -28.93 8.27 25.60 0.21 -28.72 16 20 H 0.07 3.54 7.79 -2.91 -0.02 3.52 16 21 C 0.03 1.42 5.29 84.65 0.45 1.86 16 22 N -0.91 -49.53 10.69 21.45 0.23 -49.30 16 23 Si 0.97 41.63 29.54 68.60 2.03 43.65 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 C 0.11 5.22 5.38 86.86 0.47 5.69 16 28 O -0.40 -8.00 10.75 -148.98 -1.60 -9.60 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.77 8.06 -2.39 -0.02 0.75 16 34 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.09 0.77 7.70 -2.38 -0.02 0.75 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.42 11.46 7.89 -92.71 -0.73 10.72 16 39 H 0.08 2.92 7.71 -2.39 -0.02 2.90 16 40 H 0.07 2.73 7.57 -2.39 -0.02 2.71 16 41 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 42 H 0.09 3.44 8.03 -2.39 -0.02 3.42 16 43 H 0.37 20.15 7.57 -74.06 -0.56 19.59 16 44 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 45 H 0.06 3.27 7.33 -2.39 -0.02 3.25 16 46 H 0.06 2.83 8.03 -2.38 -0.02 2.81 16 Total: -1.00 -65.19 375.22 -1.98 -67.18 By element: Atomic # 1 Polarization: 43.17 SS G_CDS: -0.29 Total: 42.88 kcal Atomic # 6 Polarization: 27.96 SS G_CDS: 4.96 Total: 32.92 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -5.02 Total: -99.00 kcal Atomic # 8 Polarization: -83.97 SS G_CDS: -3.66 Total: -87.63 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -65.19 -1.98 -67.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345891658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.067 kcal (2) G-P(sol) polarization free energy of solvation -65.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds