Wall clock time and date at job start Fri Apr 10 2020 18:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.35806 * 2 1 4 4 C 1.54947 * 110.31145 * 237.85104 * 2 1 3 5 5 C 1.55301 * 100.94191 * 204.64209 * 4 2 1 6 6 C 1.54384 * 102.25394 * 34.13422 * 5 4 2 7 7 H 1.09002 * 109.90385 * 98.20171 * 6 5 4 8 8 C 1.53001 * 109.83029 * 219.12896 * 6 5 4 9 9 N 1.46498 * 109.47036 * 184.58674 * 8 6 5 10 10 C 1.34774 * 119.99848 * 179.97438 * 9 8 6 11 11 O 1.21348 * 120.00342 * 0.02562 * 10 9 8 12 12 C 1.49452 * 119.99917 * 180.02562 * 10 9 8 13 13 O 1.21350 * 120.00101 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00156 * 180.02562 * 12 10 9 15 15 C 1.47426 * 125.64704 * 359.97438 * 14 12 10 16 16 C 1.54903 * 104.83440 * 155.90750 * 15 14 12 17 17 C 1.55160 * 101.58455 * 37.00580 * 16 15 14 18 18 O 1.42894 * 110.71943 * 83.03948 * 17 16 15 19 19 C 1.50693 * 110.72377 * 206.13945 * 17 16 15 20 20 H 1.08001 * 119.99919 * 353.46060 * 19 17 16 21 21 C 1.37878 * 120.00415 * 173.46216 * 19 17 16 22 22 N 1.31513 * 119.99695 * 356.64578 * 21 19 17 23 23 Si 1.86795 * 120.00420 * 176.64262 * 21 19 17 24 24 H 1.48503 * 109.47270 * 270.00347 * 23 21 19 25 25 H 1.48499 * 109.46846 * 30.00254 * 23 21 19 26 26 H 1.48499 * 109.47402 * 149.99998 * 23 21 19 27 27 C 1.47323 * 125.61646 * 180.19600 * 14 12 10 28 28 O 1.43232 * 107.58659 * 338.64392 * 6 5 4 29 29 H 1.08993 * 109.47311 * 299.31513 * 1 2 3 30 30 H 1.09002 * 109.46920 * 59.31563 * 1 2 3 31 31 H 1.08997 * 109.47494 * 179.31079 * 1 2 3 32 32 H 1.09004 * 111.12328 * 322.56082 * 4 2 1 33 33 H 1.09004 * 111.12392 * 86.67872 * 4 2 1 34 34 H 1.09000 * 110.85073 * 275.94098 * 5 4 2 35 35 H 1.09003 * 110.85015 * 152.32339 * 5 4 2 36 36 H 1.08997 * 109.47171 * 64.58529 * 8 6 5 37 37 H 1.09003 * 109.47045 * 304.58548 * 8 6 5 38 38 H 0.97001 * 119.99916 * 0.02562 * 9 8 6 39 39 H 1.08998 * 110.36880 * 37.06074 * 15 14 12 40 40 H 1.09011 * 110.45738 * 274.79090 * 15 14 12 41 41 H 1.09004 * 111.00283 * 278.93212 * 16 15 14 42 42 H 1.08998 * 111.04160 * 155.09358 * 16 15 14 43 43 H 0.96698 * 114.00278 * 176.88508 * 18 17 16 44 44 H 0.97005 * 120.00262 * 5.24205 * 22 21 19 45 45 H 1.08997 * 110.05946 * 61.68085 * 27 14 12 46 46 H 1.08998 * 109.84719 * 300.42404 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0219 0.0000 4 6 2.0678 -0.7732 -1.2303 5 6 3.4699 -1.2026 -0.7188 6 6 3.2112 -1.4419 0.7843 7 1 3.0629 -2.5056 0.9706 8 6 4.3990 -0.9324 1.6030 9 7 4.1952 -1.2613 3.0160 10 6 5.1202 -0.9081 3.9303 11 8 6.1217 -0.3173 3.5833 12 6 4.9126 -1.2441 5.3717 13 8 3.9108 -1.8345 5.7189 14 7 5.8374 -0.8905 6.2861 15 6 7.0940 -0.1730 6.0041 16 6 7.4646 0.5180 7.3401 17 6 7.0236 -0.5497 8.3759 18 8 8.0380 -1.5424 8.5418 19 6 6.6898 0.0945 9.6967 20 1 6.8758 1.1479 9.8460 21 6 6.1469 -0.6607 10.7145 22 7 5.8592 -1.9278 10.5116 23 14 5.8203 0.1158 12.3817 24 1 7.0202 -0.0377 13.2430 25 1 5.5192 1.5592 12.2050 26 1 4.6616 -0.5565 13.0225 27 6 5.7613 -1.1613 7.7323 28 8 2.0285 -0.7167 1.1407 29 1 -0.3633 0.5031 0.8960 30 1 -0.3633 0.5244 -0.8838 31 1 -0.3634 -1.0275 -0.0124 32 1 1.4471 -1.6417 -1.4506 33 1 2.1490 -0.1207 -2.0997 34 1 4.1975 -0.4042 -0.8649 35 1 3.7966 -2.1207 -1.2071 36 1 4.4814 0.1485 1.4898 37 1 5.3146 -1.4057 1.2482 38 1 3.3948 -1.7339 3.2934 39 1 6.9391 0.5707 5.2225 40 1 7.8753 -0.8741 5.7102 41 1 6.9035 1.4435 7.4700 42 1 8.5372 0.7020 7.4012 43 1 7.8321 -2.2068 9.2135 44 1 6.0982 -2.3510 9.6721 45 1 5.7380 -2.2363 7.9106 46 1 4.8691 -0.6947 8.1497 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345891659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:12 Heat of formation + Delta-G solvation = -163.260916 kcal Electronic energy + Delta-G solvation = -28333.590402 eV Core-core repulsion = 24223.253143 eV Total energy + Delta-G solvation = -4110.337259 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.56464 -39.95660 -38.56011 -37.39688 -35.35618 -34.43964 -32.71190 -32.33142 -32.08923 -30.27210 -28.52487 -27.79528 -25.82011 -24.60753 -23.22961 -22.08988 -21.77746 -21.02472 -20.00960 -19.46203 -18.05612 -17.52855 -17.30860 -16.64332 -16.26871 -15.84002 -15.55592 -15.14377 -14.72974 -14.43128 -14.39408 -13.90775 -13.81064 -13.60856 -13.47807 -13.18805 -13.08216 -13.00711 -12.48394 -12.45533 -12.41170 -12.17734 -12.02575 -11.67189 -11.32783 -11.27020 -11.20905 -11.11114 -11.03600 -10.84511 -10.61360 -10.48976 -10.18239 -9.91307 -9.34006 -9.26792 -9.13001 -8.67255 -8.32967 -8.14431 -6.58447 -4.42607 1.73594 2.55354 3.29789 3.35635 3.37591 3.54115 3.54587 3.83711 4.00535 4.24329 4.29627 4.36074 4.61691 4.68468 4.71937 4.90464 4.94605 4.98961 5.09236 5.18596 5.24482 5.27944 5.35703 5.40830 5.49559 5.63704 5.63930 5.70780 5.74873 5.80691 5.85814 6.09137 6.24375 6.32024 6.62044 6.64862 6.67657 6.68595 6.89723 7.06399 7.21675 7.72134 7.82835 7.95743 8.17146 8.35299 8.53997 8.90396 9.29371 10.71811 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.002448 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.256240 B =11433.626419 C =12024.861611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 H 0.071 0.929 4 C -0.151 4.151 5 C -0.147 4.147 6 C 0.068 3.932 7 H 0.090 0.910 8 C 0.110 3.890 9 N -0.700 5.700 10 C 0.512 3.488 11 O -0.520 6.520 12 C 0.508 3.492 13 O -0.534 6.534 14 N -0.576 5.576 15 C 0.099 3.901 16 C -0.113 4.113 17 C 0.226 3.774 18 O -0.583 6.583 19 C -0.613 4.613 20 H 0.063 0.937 21 C 0.027 3.973 22 N -0.903 5.903 23 Si 1.077 2.923 24 H -0.285 1.285 25 H -0.287 1.287 26 H -0.282 1.282 27 C 0.090 3.910 28 O -0.369 6.369 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.415 0.585 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.371 0.629 44 H 0.268 0.732 45 H 0.063 0.937 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 2.077 -23.027 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 H 0.089 0.911 4 C -0.189 4.189 5 C -0.186 4.186 6 C 0.010 3.990 7 H 0.108 0.892 8 C -0.013 4.013 9 N -0.354 5.354 10 C 0.293 3.707 11 O -0.396 6.396 12 C 0.290 3.710 13 O -0.412 6.412 14 N -0.309 5.309 15 C -0.023 4.023 16 C -0.151 4.151 17 C 0.186 3.814 18 O -0.390 6.390 19 C -0.651 4.651 20 H 0.082 0.918 21 C -0.178 4.178 22 N -0.542 5.542 23 Si 0.904 3.096 24 H -0.211 1.211 25 H -0.213 1.213 26 H -0.207 1.207 27 C -0.032 4.032 28 O -0.289 6.289 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.252 0.748 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.220 0.780 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.513 2.227 -21.934 22.988 hybrid contribution 0.114 -0.299 -1.202 1.244 sum -6.399 1.928 -23.135 24.081 Atomic orbital electron populations 1.21882 0.93533 1.02899 1.02564 1.23005 0.95063 0.95657 0.84666 0.91107 1.23334 0.95953 1.01041 0.98562 1.23092 0.98210 1.03294 0.93960 1.22998 0.85271 0.96851 0.93878 0.89206 1.21865 0.97726 1.01646 0.80108 1.45632 1.24016 1.58904 1.06811 1.20325 0.83386 0.79703 0.87268 1.90693 1.27874 1.39718 1.81287 1.19612 0.83776 0.81673 0.85973 1.90739 1.27919 1.41648 1.80940 1.48668 1.19793 1.53523 1.08877 1.22646 0.84939 0.96041 0.98709 1.22736 1.01703 0.98015 0.92596 1.19827 0.82771 0.85198 0.93611 1.86273 1.47395 1.42832 1.62542 1.22373 1.47224 0.98104 0.97420 0.91823 1.26054 0.92403 0.95470 1.03903 1.70956 1.43023 1.11955 1.28257 0.83415 0.77041 0.74936 0.74224 1.21103 1.21256 1.20734 1.23515 1.02833 1.00666 0.76144 1.88525 1.41512 1.64612 1.34231 0.91647 0.91262 0.91864 0.90102 0.89732 0.89845 0.89439 0.90639 0.90030 0.74796 0.89278 0.91361 0.90227 0.90198 0.78032 0.91772 0.91835 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.62 37.16 0.36 -0.65 16 2 C 0.07 0.55 4.08 -25.70 -0.10 0.45 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.15 -0.81 6.57 -24.48 -0.16 -0.97 16 5 C -0.15 -0.84 6.54 -24.79 -0.16 -1.00 16 6 C 0.07 0.57 3.56 -26.00 -0.09 0.48 16 7 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 8 C 0.11 1.15 5.21 -4.04 -0.02 1.13 16 9 N -0.70 -9.59 5.52 -60.73 -0.34 -9.93 16 10 C 0.51 8.84 7.86 -11.59 -0.09 8.75 16 11 O -0.52 -9.47 13.78 5.50 0.08 -9.39 16 12 C 0.51 10.43 7.91 -11.58 -0.09 10.34 16 13 O -0.53 -11.98 16.80 5.50 0.09 -11.89 16 14 N -0.58 -12.47 3.33 -170.78 -0.57 -13.04 16 15 C 0.10 1.95 6.05 -2.53 -0.02 1.94 16 16 C -0.11 -2.36 6.23 -24.58 -0.15 -2.52 16 17 C 0.23 5.53 0.82 -89.94 -0.07 5.46 16 18 O -0.58 -14.52 13.09 -35.23 -0.46 -14.98 16 19 C -0.61 -16.27 8.12 -34.44 -0.28 -16.55 16 20 H 0.06 1.68 7.79 -52.49 -0.41 1.27 16 21 C 0.03 0.72 5.20 -17.82 -0.09 0.63 16 22 N -0.90 -25.22 12.92 55.43 0.72 -24.50 16 23 Si 1.08 23.97 29.90 -169.99 -5.08 18.89 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 C 0.09 2.19 4.97 -2.90 -0.01 2.18 16 28 O -0.37 -3.82 10.67 -35.23 -0.38 -4.20 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.41 8.06 -51.93 -0.42 -0.01 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.44 7.85 -51.93 -0.41 0.03 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.42 5.58 7.94 -40.82 -0.32 5.26 16 39 H 0.09 1.65 6.16 -51.93 -0.32 1.33 16 40 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 41 H 0.08 1.62 8.04 -51.93 -0.42 1.20 16 42 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.37 9.21 6.82 45.56 0.31 9.52 16 44 H 0.27 7.36 3.96 -40.82 -0.16 7.20 16 45 H 0.06 1.62 6.73 -51.93 -0.35 1.27 16 46 H 0.08 2.10 7.81 -51.93 -0.41 1.69 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -31.60 370.80 -7.70 -39.29 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -6.35 Total: 14.50 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -1.00 Total: 9.65 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.19 Total: -47.46 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -0.67 Total: -40.45 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.08 Total: 18.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.60 -7.70 -39.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345891659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.967 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds