Wall clock time and date at job start Fri Apr 10 2020 18:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.35806 * 2 1 4 4 C 1.54947 * 110.31145 * 237.85104 * 2 1 3 5 5 C 1.55301 * 100.94191 * 204.64209 * 4 2 1 6 6 C 1.54384 * 102.25394 * 34.13422 * 5 4 2 7 7 H 1.09002 * 109.90385 * 98.20171 * 6 5 4 8 8 C 1.53001 * 109.83029 * 219.12896 * 6 5 4 9 9 N 1.46498 * 109.47036 * 184.58674 * 8 6 5 10 10 C 1.34774 * 119.99848 * 179.97438 * 9 8 6 11 11 O 1.21348 * 120.00342 * 0.02562 * 10 9 8 12 12 C 1.49452 * 119.99917 * 180.02562 * 10 9 8 13 13 O 1.21350 * 120.00101 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00156 * 180.02562 * 12 10 9 15 15 C 1.47426 * 125.64704 * 359.97438 * 14 12 10 16 16 C 1.54903 * 104.83440 * 155.90750 * 15 14 12 17 17 C 1.55160 * 101.58455 * 37.00580 * 16 15 14 18 18 O 1.42894 * 110.71943 * 83.03948 * 17 16 15 19 19 C 1.50693 * 110.72377 * 206.13945 * 17 16 15 20 20 H 1.08001 * 119.99919 * 353.46060 * 19 17 16 21 21 C 1.37878 * 120.00415 * 173.46216 * 19 17 16 22 22 N 1.31513 * 119.99695 * 356.64578 * 21 19 17 23 23 Si 1.86795 * 120.00420 * 176.64262 * 21 19 17 24 24 H 1.48503 * 109.47270 * 270.00347 * 23 21 19 25 25 H 1.48499 * 109.46846 * 30.00254 * 23 21 19 26 26 H 1.48499 * 109.47402 * 149.99998 * 23 21 19 27 27 C 1.47323 * 125.61646 * 180.19600 * 14 12 10 28 28 O 1.43232 * 107.58659 * 338.64392 * 6 5 4 29 29 H 1.08993 * 109.47311 * 299.31513 * 1 2 3 30 30 H 1.09002 * 109.46920 * 59.31563 * 1 2 3 31 31 H 1.08997 * 109.47494 * 179.31079 * 1 2 3 32 32 H 1.09004 * 111.12328 * 322.56082 * 4 2 1 33 33 H 1.09004 * 111.12392 * 86.67872 * 4 2 1 34 34 H 1.09000 * 110.85073 * 275.94098 * 5 4 2 35 35 H 1.09003 * 110.85015 * 152.32339 * 5 4 2 36 36 H 1.08997 * 109.47171 * 64.58529 * 8 6 5 37 37 H 1.09003 * 109.47045 * 304.58548 * 8 6 5 38 38 H 0.97001 * 119.99916 * 0.02562 * 9 8 6 39 39 H 1.08998 * 110.36880 * 37.06074 * 15 14 12 40 40 H 1.09011 * 110.45738 * 274.79090 * 15 14 12 41 41 H 1.09004 * 111.00283 * 278.93212 * 16 15 14 42 42 H 1.08998 * 111.04160 * 155.09358 * 16 15 14 43 43 H 0.96698 * 114.00278 * 176.88508 * 18 17 16 44 44 H 0.97005 * 120.00262 * 5.24205 * 22 21 19 45 45 H 1.08997 * 110.05946 * 61.68085 * 27 14 12 46 46 H 1.08998 * 109.84719 * 300.42404 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0219 0.0000 4 6 2.0678 -0.7732 -1.2303 5 6 3.4699 -1.2026 -0.7188 6 6 3.2112 -1.4419 0.7843 7 1 3.0629 -2.5056 0.9706 8 6 4.3990 -0.9324 1.6030 9 7 4.1952 -1.2613 3.0160 10 6 5.1202 -0.9081 3.9303 11 8 6.1217 -0.3173 3.5833 12 6 4.9126 -1.2441 5.3717 13 8 3.9108 -1.8345 5.7189 14 7 5.8374 -0.8905 6.2861 15 6 7.0940 -0.1730 6.0041 16 6 7.4646 0.5180 7.3401 17 6 7.0236 -0.5497 8.3759 18 8 8.0380 -1.5424 8.5418 19 6 6.6898 0.0945 9.6967 20 1 6.8758 1.1479 9.8460 21 6 6.1469 -0.6607 10.7145 22 7 5.8592 -1.9278 10.5116 23 14 5.8203 0.1158 12.3817 24 1 7.0202 -0.0377 13.2430 25 1 5.5192 1.5592 12.2050 26 1 4.6616 -0.5565 13.0225 27 6 5.7613 -1.1613 7.7323 28 8 2.0285 -0.7167 1.1407 29 1 -0.3633 0.5031 0.8960 30 1 -0.3633 0.5244 -0.8838 31 1 -0.3634 -1.0275 -0.0124 32 1 1.4471 -1.6417 -1.4506 33 1 2.1490 -0.1207 -2.0997 34 1 4.1975 -0.4042 -0.8649 35 1 3.7966 -2.1207 -1.2071 36 1 4.4814 0.1485 1.4898 37 1 5.3146 -1.4057 1.2482 38 1 3.3948 -1.7339 3.2934 39 1 6.9391 0.5707 5.2225 40 1 7.8753 -0.8741 5.7102 41 1 6.9035 1.4435 7.4700 42 1 8.5372 0.7020 7.4012 43 1 7.8321 -2.2068 9.2135 44 1 6.0982 -2.3510 9.6721 45 1 5.7380 -2.2363 7.9106 46 1 4.8691 -0.6947 8.1497 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345891659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:11 Heat of formation + Delta-G solvation = -187.678904 kcal Electronic energy + Delta-G solvation = -28334.649246 eV Core-core repulsion = 24223.253143 eV Total energy + Delta-G solvation = -4111.396102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.98270 -40.80976 -40.08801 -39.12400 -36.82400 -35.91220 -34.37628 -33.27485 -32.80601 -32.04516 -29.78566 -29.21800 -27.55058 -25.81919 -24.56361 -23.25562 -22.64216 -21.75677 -21.71125 -20.99638 -19.97546 -18.95816 -18.14106 -18.03007 -17.56988 -16.99428 -16.84362 -16.75082 -15.95628 -15.93427 -15.66483 -15.50149 -15.14006 -14.96495 -14.84122 -14.42532 -14.21927 -14.13353 -13.99503 -13.76291 -13.14727 -13.10968 -13.00449 -12.90005 -12.85626 -12.66157 -12.60164 -12.38969 -12.29543 -12.20072 -11.94184 -11.77563 -11.69535 -11.24783 -10.79524 -10.62293 -10.56365 -10.42225 -10.31644 -9.91598 -8.69833 -6.55859 0.21845 1.13185 1.55561 1.61349 1.80405 1.99720 2.33369 2.52150 2.76145 2.96114 3.22483 3.47817 3.53791 3.62261 3.80573 3.83076 3.87338 4.09219 4.13360 4.20420 4.31585 4.32213 4.41996 4.47453 4.52656 4.56440 4.72630 4.77778 4.80865 4.87171 4.91091 4.93062 5.02702 5.05270 5.07070 5.12030 5.24497 5.24823 5.30855 5.71331 5.88612 6.03693 6.07628 6.22802 6.41190 6.51833 6.79937 6.88858 7.23983 8.61201 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.002448 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.256240 B =11433.626419 C =12024.861611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 H 0.069 0.931 4 C -0.143 4.143 5 C -0.142 4.142 6 C 0.068 3.932 7 H 0.095 0.905 8 C 0.108 3.892 9 N -0.683 5.683 10 C 0.519 3.481 11 O -0.529 6.529 12 C 0.501 3.499 13 O -0.559 6.559 14 N -0.584 5.584 15 C 0.109 3.891 16 C -0.107 4.107 17 C 0.213 3.787 18 O -0.584 6.584 19 C -0.627 4.627 20 H 0.063 0.937 21 C -0.016 4.016 22 N -0.925 5.925 23 Si 1.120 2.880 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.286 1.286 27 C 0.105 3.895 28 O -0.399 6.399 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.417 0.583 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.368 0.632 44 H 0.262 0.738 45 H 0.042 0.958 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 2.893 -25.145 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.005 3.995 3 H 0.087 0.913 4 C -0.181 4.181 5 C -0.180 4.180 6 C 0.010 3.990 7 H 0.113 0.887 8 C -0.015 4.015 9 N -0.336 5.336 10 C 0.299 3.701 11 O -0.406 6.406 12 C 0.285 3.715 13 O -0.439 6.439 14 N -0.316 5.316 15 C -0.013 4.013 16 C -0.145 4.145 17 C 0.173 3.827 18 O -0.391 6.391 19 C -0.665 4.665 20 H 0.081 0.919 21 C -0.216 4.216 22 N -0.565 5.565 23 Si 0.941 3.059 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.212 1.212 27 C -0.018 4.018 28 O -0.319 6.319 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.254 0.746 39 H 0.125 0.875 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.216 0.784 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.270 3.051 -24.115 25.103 hybrid contribution -0.025 -0.567 -0.609 0.833 sum -6.295 2.484 -24.724 25.634 Atomic orbital electron populations 1.21889 0.93177 1.02852 1.02800 1.23214 0.95480 0.95735 0.85072 0.91294 1.23320 0.95505 1.01210 0.98030 1.23114 0.98607 1.04473 0.91757 1.23086 0.83945 0.96732 0.95283 0.88705 1.22168 0.99570 1.01738 0.78004 1.45697 1.22852 1.57282 1.07761 1.19632 0.84133 0.80369 0.85935 1.90683 1.28370 1.40660 1.80894 1.20361 0.82948 0.80687 0.87498 1.90715 1.28844 1.42529 1.81782 1.48724 1.20885 1.54137 1.07895 1.22668 0.84071 0.96157 0.98374 1.22752 1.02692 0.97156 0.91893 1.19994 0.82872 0.85876 0.93983 1.86257 1.47537 1.42874 1.62426 1.22667 1.47073 0.98210 0.98539 0.91906 1.27323 0.91881 0.95334 1.07086 1.71033 1.44355 1.12884 1.28219 0.82871 0.77221 0.74913 0.70853 1.19594 1.19654 1.21152 1.23057 1.01646 0.98869 0.78184 1.88503 1.42229 1.65078 1.36084 0.93171 0.89235 0.92069 0.89608 0.87879 0.89211 0.87614 0.90934 0.88595 0.74621 0.87510 0.90965 0.89677 0.88735 0.78400 0.92527 0.93969 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.62 71.98 0.69 -1.13 16 2 C 0.06 0.84 4.08 31.26 0.13 0.97 16 3 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.14 -1.14 6.57 32.05 0.21 -0.93 16 5 C -0.14 -1.19 6.54 31.85 0.21 -0.98 16 6 C 0.07 1.00 3.56 31.06 0.11 1.11 16 7 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 8 C 0.11 2.04 5.21 86.38 0.45 2.49 16 9 N -0.68 -17.98 5.52 -464.42 -2.56 -20.55 16 10 C 0.52 17.45 7.86 87.27 0.69 18.13 16 11 O -0.53 -18.37 13.78 -3.24 -0.04 -18.41 16 12 C 0.50 20.71 7.91 87.27 0.69 21.40 16 13 O -0.56 -25.60 16.80 -3.25 -0.05 -25.66 16 14 N -0.58 -25.44 3.33 -812.59 -2.71 -28.15 16 15 C 0.11 4.17 6.05 86.85 0.53 4.70 16 16 C -0.11 -4.40 6.23 31.99 0.20 -4.20 16 17 C 0.21 10.51 0.82 -10.35 -0.01 10.50 16 18 O -0.58 -29.37 13.09 -148.98 -1.95 -31.32 16 19 C -0.63 -33.48 8.12 25.60 0.21 -33.28 16 20 H 0.06 3.29 7.79 -2.91 -0.02 3.27 16 21 C -0.02 -0.87 5.20 84.66 0.44 -0.43 16 22 N -0.93 -52.82 12.92 21.45 0.28 -52.54 16 23 Si 1.12 48.09 29.90 68.60 2.05 50.14 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.11 5.29 4.97 86.67 0.43 5.72 16 28 O -0.40 -7.83 10.67 -148.98 -1.59 -9.42 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.62 8.06 -2.38 -0.02 0.60 16 33 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.09 0.67 7.85 -2.39 -0.02 0.65 16 35 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.42 10.94 7.94 -92.71 -0.74 10.21 16 39 H 0.11 3.76 6.16 -2.39 -0.01 3.75 16 40 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 41 H 0.08 3.37 8.04 -2.38 -0.02 3.35 16 42 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 43 H 0.37 18.77 6.82 -74.06 -0.50 18.26 16 44 H 0.26 14.88 3.96 -92.70 -0.37 14.51 16 45 H 0.04 2.26 6.73 -2.39 -0.02 2.24 16 46 H 0.05 2.73 7.81 -2.39 -0.02 2.71 16 Total: -1.00 -68.32 370.80 -1.44 -69.76 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: 0.17 Total: 42.07 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: 4.97 Total: 24.08 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -5.00 Total: -101.23 kcal Atomic # 8 Polarization: -81.17 SS G_CDS: -3.64 Total: -84.81 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.05 Total: 50.14 kcal Total: -68.32 -1.44 -69.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345891659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.922 kcal (2) G-P(sol) polarization free energy of solvation -68.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds