Wall clock time and date at job start Fri Apr 10 2020 18:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.99948 * 2 1 4 4 O 1.42904 * 109.47135 * 64.63869 * 3 2 1 5 5 C 1.54310 * 109.98850 * 238.96910 * 2 1 3 6 6 C 1.55162 * 102.86701 * 263.04810 * 5 2 1 7 7 C 1.54912 * 101.57716 * 324.30121 * 6 5 2 8 8 N 1.47024 * 109.88215 * 121.09338 * 2 1 3 9 9 C 1.34775 * 125.65067 * 300.51275 * 8 2 1 10 10 O 1.21355 * 119.99852 * 359.71955 * 9 8 2 11 11 C 1.49449 * 120.00195 * 179.71799 * 9 8 2 12 12 O 1.21355 * 119.99953 * 0.02562 * 11 9 8 13 13 N 1.34775 * 120.00195 * 179.97438 * 11 9 8 14 14 C 1.47026 * 125.64631 * 0.05437 * 13 11 9 15 15 C 1.54326 * 107.27129 * 181.00877 * 14 13 11 16 16 C 1.55158 * 102.93871 * 22.19653 * 15 14 13 17 17 O 1.42902 * 111.00829 * 82.56956 * 16 15 14 18 18 C 1.50705 * 111.00269 * 206.41952 * 16 15 14 19 19 H 1.08005 * 120.00051 * 117.97096 * 18 16 15 20 20 C 1.37871 * 120.00119 * 297.97682 * 18 16 15 21 21 N 1.31517 * 120.00134 * 186.95788 * 20 18 16 22 22 Si 1.86806 * 120.00095 * 6.95067 * 20 18 16 23 23 H 1.48498 * 109.46962 * 84.71871 * 22 20 18 24 24 H 1.48496 * 109.47083 * 204.72039 * 22 20 18 25 25 H 1.48504 * 109.46784 * 324.71694 * 22 20 18 26 26 C 1.47421 * 125.65154 * 179.97438 * 13 11 9 27 27 H 1.09006 * 109.47313 * 300.35702 * 1 2 3 28 28 H 1.08997 * 109.47404 * 60.36121 * 1 2 3 29 29 H 1.09010 * 109.46793 * 180.36063 * 1 2 3 30 30 H 1.08998 * 109.47140 * 184.64312 * 3 2 1 31 31 H 1.09000 * 109.46528 * 304.64737 * 3 2 1 32 32 H 0.96696 * 114.00275 * 180.02562 * 4 3 2 33 33 H 1.09000 * 110.92481 * 144.62860 * 5 2 1 34 34 H 1.09004 * 110.73869 * 21.37858 * 5 2 1 35 35 H 1.08998 * 110.99996 * 206.22829 * 6 5 2 36 36 H 1.09001 * 110.99998 * 82.37605 * 6 5 2 37 37 H 1.08996 * 110.36775 * 278.16600 * 7 6 5 38 38 H 1.09002 * 110.45248 * 155.89204 * 7 6 5 39 39 H 1.09005 * 109.88595 * 61.59654 * 14 13 11 40 40 H 1.08998 * 109.88307 * 300.42985 * 14 13 11 41 41 H 1.08998 * 110.72414 * 263.83468 * 15 14 13 42 42 H 1.08999 * 110.71642 * 140.55226 * 15 14 13 43 43 H 0.96701 * 114.00296 * 179.97438 * 17 16 15 44 44 H 0.96998 * 119.99871 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.36292 * 37.08055 * 26 13 11 46 46 H 1.09001 * 110.46217 * 274.80462 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4378 0.0000 4 8 1.6739 2.0827 1.2175 5 6 2.0575 -0.7475 -1.2426 6 6 2.3476 -2.1693 -0.6932 7 6 2.8524 -1.8530 0.7368 8 7 2.0300 -0.7140 1.1840 9 6 1.7742 -0.3852 2.4657 10 8 1.0804 0.5778 2.7182 11 6 2.3451 -1.2066 3.5761 12 8 3.0393 -2.1694 3.3236 13 7 2.0898 -0.8775 4.8579 14 6 1.2688 0.2578 5.3038 15 6 1.2806 0.2535 6.8470 16 6 2.5677 -0.5455 7.1824 17 8 3.7222 0.2945 7.1225 18 6 2.4551 -1.2099 8.5304 19 1 2.4939 -2.2865 8.6067 20 6 2.3024 -0.4433 9.6662 21 7 2.3415 -1.0102 10.8523 22 14 2.0403 1.4005 9.5204 23 1 0.5981 1.6797 9.3030 24 1 2.4903 2.0647 10.7700 25 1 2.8242 1.9226 8.3723 26 6 2.5859 -1.5972 6.0450 27 1 -0.3634 0.5194 0.8868 28 1 -0.3634 0.5082 -0.8932 29 1 -0.3633 -1.0278 0.0065 30 1 3.1400 1.4289 -0.0832 31 1 1.6285 1.9789 -0.8455 32 1 1.9725 2.9999 1.2863 33 1 2.9707 -0.2848 -1.6167 34 1 1.2973 -0.7834 -2.0230 35 1 3.1213 -2.6645 -1.2800 36 1 1.4382 -2.7695 -0.6628 37 1 3.9059 -1.5746 0.7143 38 1 2.7012 -2.7105 1.3925 39 1 0.2476 0.1421 4.9406 40 1 1.6931 1.1905 4.9324 41 1 0.3988 -0.2540 7.2380 42 1 1.3457 1.2700 7.2349 43 1 4.5509 -0.1609 7.3252 44 1 2.2344 -0.4708 11.6513 45 1 3.6016 -1.9544 5.8749 46 1 1.9271 -2.4308 6.2882 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349343198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:20 Heat of formation + Delta-G solvation = -160.281181 kcal Electronic energy + Delta-G solvation = -30035.847381 eV Core-core repulsion = 25925.639333 eV Total energy + Delta-G solvation = -4110.208048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.02872 -40.74374 -39.17545 -38.54943 -37.09829 -36.20545 -34.52971 -33.09649 -32.25619 -32.07789 -30.11620 -27.88471 -27.63788 -26.25623 -25.37734 -23.86425 -22.84669 -21.71771 -21.14261 -19.68106 -19.28545 -18.35596 -18.05490 -17.77276 -17.42702 -17.00309 -16.92342 -16.49184 -16.33137 -15.60900 -15.45122 -15.19454 -14.98064 -14.79030 -14.54578 -14.34210 -14.28560 -13.91781 -13.84360 -13.47678 -13.32186 -13.29011 -13.12156 -13.01197 -12.87174 -12.59696 -12.49454 -12.40472 -12.22951 -11.87393 -11.82326 -11.64844 -11.54269 -11.02276 -10.79745 -10.78390 -10.47732 -10.28220 -9.82722 -9.57228 -8.38847 -6.53573 0.47240 1.22312 1.37373 1.44603 1.64781 2.23266 2.36625 2.38090 2.96555 3.16384 3.29715 3.50135 3.63032 3.75899 3.77676 3.96905 3.99587 4.17013 4.19510 4.23574 4.36370 4.45300 4.47549 4.56646 4.61964 4.67441 4.75515 4.84144 4.88046 4.90451 4.92897 5.00308 5.03066 5.06390 5.11088 5.26151 5.30243 5.35373 5.46073 5.51836 6.03993 6.18740 6.31134 6.57072 6.64232 6.97404 7.08649 7.10619 7.27157 8.74998 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.024802 B = 0.003523 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.663706 B = 7946.826085 C = 8583.509959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.153 3.847 3 C 0.065 3.935 4 O -0.561 6.561 5 C -0.112 4.112 6 C -0.123 4.123 7 C 0.089 3.911 8 N -0.586 5.586 9 C 0.516 3.484 10 O -0.484 6.484 11 C 0.508 3.492 12 O -0.551 6.551 13 N -0.582 5.582 14 C 0.128 3.872 15 C -0.133 4.133 16 C 0.217 3.783 17 O -0.574 6.574 18 C -0.551 4.551 19 H 0.046 0.954 20 C 0.045 3.955 21 N -0.930 5.930 22 Si 0.932 3.068 23 H -0.267 1.267 24 H -0.305 1.305 25 H -0.225 1.225 26 C 0.100 3.900 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.377 0.623 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.377 0.623 44 H 0.270 0.730 45 H 0.071 0.929 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.272 3.791 -28.227 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.069 3.931 3 C -0.013 4.013 4 O -0.366 6.366 5 C -0.150 4.150 6 C -0.161 4.161 7 C -0.033 4.033 8 N -0.322 5.322 9 C 0.298 3.702 10 O -0.357 6.357 11 C 0.292 3.708 12 O -0.430 6.430 13 N -0.314 5.314 14 C 0.006 3.994 15 C -0.171 4.171 16 C 0.177 3.823 17 O -0.382 6.382 18 C -0.588 4.588 19 H 0.065 0.935 20 C -0.157 4.157 21 N -0.568 5.568 22 Si 0.758 3.242 23 H -0.193 1.193 24 H -0.233 1.233 25 H -0.148 1.148 26 C -0.022 4.022 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.224 0.776 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.225 0.775 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.028 3.708 -28.090 28.406 hybrid contribution 0.656 0.515 1.111 1.389 sum -1.373 4.223 -26.979 27.342 Atomic orbital electron populations 1.22044 0.93633 1.01960 1.03062 1.21535 0.95173 0.91296 0.85068 1.22701 0.98036 0.92413 0.88191 1.87012 1.80545 1.30328 1.38764 1.22736 1.03351 0.94483 0.94421 1.22832 1.02929 0.97104 0.93239 1.22720 0.94664 0.88733 0.97187 1.48339 1.49913 1.30484 1.03495 1.19376 0.82769 0.84967 0.83108 1.90773 1.36364 1.26121 1.82450 1.20340 0.81876 0.85326 0.83239 1.90644 1.39622 1.29551 1.83223 1.48414 1.48752 1.29667 1.04587 1.22030 0.95101 0.88541 0.93701 1.23062 0.98580 1.01155 0.94291 1.19957 0.84459 0.86844 0.91075 1.86419 1.17643 1.41141 1.92979 1.21296 1.52892 0.94055 0.90588 0.93525 1.25646 0.92428 1.03250 0.94351 1.70044 1.49437 1.38624 0.98730 0.86173 0.79605 0.80571 0.77862 1.19289 1.23252 1.14756 1.22898 0.99582 0.95900 0.83832 0.93523 0.89364 0.92659 0.93699 0.90505 0.77602 0.88594 0.87073 0.87080 0.90322 0.91402 0.90460 0.90126 0.90937 0.89234 0.90679 0.77491 0.92142 0.91051 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.28 71.98 0.60 -2.25 16 2 C 0.15 2.81 0.79 3.95 0.00 2.81 16 3 C 0.07 1.13 6.03 71.98 0.43 1.57 16 4 O -0.56 -13.52 9.34 -125.35 -1.17 -14.69 16 5 C -0.11 -1.12 6.01 31.78 0.19 -0.93 16 6 C -0.12 -1.48 7.08 31.99 0.23 -1.25 16 7 C 0.09 1.91 6.07 86.86 0.53 2.44 16 8 N -0.59 -15.05 2.82 -766.82 -2.16 -17.21 16 9 C 0.52 17.17 7.26 87.27 0.63 17.81 16 10 O -0.48 -17.15 9.78 20.37 0.20 -16.95 16 11 C 0.51 19.10 7.88 87.27 0.69 19.79 16 12 O -0.55 -21.64 14.03 -3.26 -0.05 -21.69 16 13 N -0.58 -22.77 3.33 -813.32 -2.71 -25.47 16 14 C 0.13 4.82 5.49 86.73 0.48 5.29 16 15 C -0.13 -5.51 4.64 31.78 0.15 -5.36 16 16 C 0.22 9.82 0.70 -10.14 -0.01 9.81 16 17 O -0.57 -25.30 10.82 -148.98 -1.61 -26.91 16 18 C -0.55 -29.69 8.83 25.60 0.23 -29.46 16 19 H 0.05 2.77 8.03 -2.91 -0.02 2.74 16 20 C 0.04 2.48 5.47 84.65 0.46 2.95 16 21 N -0.93 -55.88 13.96 21.45 0.30 -55.58 16 22 Si 0.93 43.82 23.98 68.60 1.65 45.46 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 25 H -0.22 -10.25 5.44 99.48 0.54 -9.71 16 26 C 0.10 4.18 6.08 86.86 0.53 4.71 16 27 H 0.05 1.24 6.46 -2.38 -0.02 1.22 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.03 8.14 -2.38 -0.02 1.02 16 30 H 0.04 0.74 8.06 -2.39 -0.02 0.72 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.38 6.30 9.12 -74.06 -0.68 5.63 16 33 H 0.10 0.68 7.80 -2.39 -0.02 0.67 16 34 H 0.11 0.62 7.84 -2.39 -0.02 0.60 16 35 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 2.04 6.15 -2.39 -0.01 2.03 16 39 H 0.08 2.83 7.70 -2.38 -0.02 2.81 16 40 H 0.07 2.76 7.58 -2.39 -0.02 2.74 16 41 H 0.09 3.66 8.03 -2.39 -0.02 3.64 16 42 H 0.07 3.12 4.82 -2.39 -0.01 3.11 16 43 H 0.38 14.73 9.06 -74.06 -0.67 14.05 16 44 H 0.27 15.26 8.31 -92.71 -0.77 14.48 16 45 H 0.07 2.97 8.04 -2.39 -0.02 2.95 16 46 H 0.07 3.08 8.03 -2.39 -0.02 3.06 16 Total: -1.00 -72.27 352.19 -0.91 -73.18 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -0.49 Total: 31.94 kcal Atomic # 6 Polarization: 22.79 SS G_CDS: 5.13 Total: 27.92 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -4.57 Total: -98.26 kcal Atomic # 8 Polarization: -77.61 SS G_CDS: -2.63 Total: -80.24 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.65 Total: 45.46 kcal Total: -72.27 -0.91 -73.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349343198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.102 kcal (2) G-P(sol) polarization free energy of solvation -72.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds