Wall clock time and date at job start Fri Apr 10 2020 18:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.43228 * 2 1 4 4 C 1.47685 * 109.43832 * 240.07992 * 2 1 3 5 5 O 1.42561 * 113.66391 * 179.17124 * 4 2 1 6 6 C 1.40535 * 113.54073 * 87.75785 * 5 4 2 7 7 C 1.54294 * 109.86677 * 264.71506 * 6 5 4 8 8 N 1.48175 * 110.69603 * 39.38499 * 7 6 5 9 9 C 1.34783 * 118.51127 * 221.22919 * 8 7 6 10 10 O 1.21342 * 119.99916 * 353.79660 * 9 8 7 11 11 C 1.49453 * 119.99975 * 173.79965 * 9 8 7 12 12 O 1.21353 * 119.99767 * 353.90210 * 11 9 8 13 13 N 1.34771 * 120.00143 * 173.89859 * 11 9 8 14 14 C 1.47026 * 125.64957 * 0.02562 * 13 11 9 15 15 C 1.54323 * 107.27293 * 181.02185 * 14 13 11 16 16 C 1.55154 * 102.93966 * 22.19593 * 15 14 13 17 17 O 1.42902 * 111.00828 * 82.57147 * 16 15 14 18 18 C 1.50700 * 111.00269 * 206.38462 * 16 15 14 19 19 H 1.07998 * 119.99780 * 359.97438 * 18 16 15 20 20 C 1.37885 * 120.00434 * 180.02562 * 18 16 15 21 21 N 1.31509 * 119.99467 * 359.97438 * 20 18 16 22 22 Si 1.86792 * 120.00058 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47430 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47073 * 120.00123 * 22 20 18 25 25 H 1.48501 * 109.47115 * 239.99855 * 22 20 18 26 26 C 1.47428 * 125.64990 * 179.71723 * 13 11 9 27 27 C 1.44453 * 122.97440 * 41.22373 * 8 7 6 28 28 H 1.09000 * 109.47331 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47593 * 300.00263 * 1 2 3 30 30 H 1.09000 * 109.47142 * 60.00810 * 1 2 3 31 31 H 1.08996 * 108.64683 * 300.25726 * 4 2 1 32 32 H 1.09010 * 108.64297 * 58.09789 * 4 2 1 33 33 H 1.09000 * 109.40165 * 24.83362 * 6 5 4 34 34 H 1.08995 * 109.39971 * 144.58868 * 6 5 4 35 35 H 1.08999 * 109.23373 * 159.70327 * 7 6 5 36 36 H 1.09004 * 109.22993 * 279.11483 * 7 6 5 37 37 H 1.09006 * 109.87597 * 300.44530 * 14 13 11 38 38 H 1.09004 * 109.88155 * 61.60013 * 14 13 11 39 39 H 1.09000 * 110.71563 * 140.55280 * 15 14 13 40 40 H 1.08994 * 110.72192 * 263.83073 * 15 14 13 41 41 H 0.96700 * 113.99897 * 179.97438 * 17 16 15 42 42 H 0.97002 * 120.00258 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.36605 * 274.74538 * 26 13 11 44 44 H 1.09000 * 110.36367 * 37.06930 * 26 13 11 45 45 H 1.09007 * 109.49650 * 151.10936 * 27 8 7 46 46 H 1.08995 * 109.49914 * 31.02523 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0215 -0.6947 -1.2071 5 8 3.4431 -0.7307 -1.3076 6 6 4.0241 -1.8322 -0.6563 7 6 4.4677 -1.4269 0.7649 8 7 3.4697 -0.5263 1.3881 9 6 3.9117 0.5289 2.1007 10 8 5.0986 0.6617 2.3154 11 6 2.9400 1.5353 2.6266 12 8 1.7679 1.4647 2.3203 13 7 3.3654 2.5213 3.4410 14 6 4.7507 2.7241 3.8898 15 6 4.7546 3.9527 4.8237 16 6 3.2796 4.0330 5.2983 17 8 3.0425 3.1388 6.3875 18 6 2.9085 5.4450 5.6719 19 1 3.6397 6.2355 5.5887 20 6 1.6358 5.7276 6.1210 21 7 0.7457 4.7649 6.2228 22 14 1.1762 7.4777 6.5847 23 1 2.3475 8.3677 6.3812 24 1 0.0518 7.9370 5.7304 25 1 0.7637 7.5198 8.0106 26 6 2.5199 3.5788 4.0243 27 6 2.0445 -0.7279 1.2665 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 1.6467 -1.7181 -1.1970 32 1 1.6227 -0.1892 -2.0867 33 1 3.2954 -2.6402 -0.5915 34 1 4.8907 -2.1722 -1.2231 35 1 4.5747 -2.3225 1.3767 36 1 5.4278 -0.9138 0.7086 37 1 5.0970 1.8446 4.4327 38 1 5.3954 2.9095 3.0306 39 1 5.4235 3.7923 5.6692 40 1 5.0329 4.8528 4.2757 41 1 2.1341 3.1542 6.7184 42 1 -0.1498 4.9637 6.5383 43 1 2.4153 4.4092 3.3259 44 1 1.5411 3.1790 4.2891 45 1 1.5435 -0.3246 2.1466 46 1 1.8336 -1.7941 1.1842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352988216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:31 Heat of formation + Delta-G solvation = -159.708502 kcal Electronic energy + Delta-G solvation = -29972.201788 eV Core-core repulsion = 25862.018573 eV Total energy + Delta-G solvation = -4110.183215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.22327 -40.60276 -39.52951 -38.93835 -36.88253 -35.92075 -35.27828 -34.17447 -31.96339 -30.84168 -29.73740 -27.81849 -27.47049 -27.09687 -25.53975 -23.92096 -22.32362 -21.78657 -21.46573 -20.22773 -19.19825 -18.61209 -18.28270 -17.69825 -17.36322 -17.11939 -16.95458 -16.44263 -16.36473 -16.11902 -15.76036 -15.06025 -15.02131 -14.79175 -14.71614 -14.60801 -14.19873 -14.03528 -13.68363 -13.52106 -13.37614 -13.12242 -12.99902 -12.86538 -12.73171 -12.57910 -12.48232 -12.33252 -12.24169 -12.17979 -12.06318 -11.74552 -11.53169 -11.25577 -10.69001 -10.62481 -10.43660 -10.28541 -9.87814 -9.53992 -8.27744 -6.44180 0.33627 1.23639 1.42198 1.45648 1.56350 2.08064 2.31581 2.40517 2.92446 2.98321 3.14705 3.71905 3.75894 3.80347 3.92617 4.06310 4.12039 4.14906 4.22021 4.29403 4.36916 4.39418 4.58280 4.62845 4.64991 4.67352 4.71401 4.80931 4.83501 4.87444 4.94622 5.03501 5.07804 5.12517 5.28717 5.31433 5.37731 5.41051 5.47159 5.74000 5.87839 6.00949 6.31592 6.34305 6.57389 6.65510 6.91828 7.28240 7.37987 8.78664 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.020698 B = 0.003500 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.460112 B = 7998.092110 C = 8833.607465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.125 4.125 3 H 0.042 0.958 4 C 0.063 3.937 5 O -0.393 6.393 6 C 0.051 3.949 7 C 0.075 3.925 8 N -0.570 5.570 9 C 0.505 3.495 10 O -0.537 6.537 11 C 0.498 3.502 12 O -0.535 6.535 13 N -0.584 5.584 14 C 0.121 3.879 15 C -0.116 4.116 16 C 0.234 3.766 17 O -0.590 6.590 18 C -0.556 4.556 19 H 0.070 0.930 20 C 0.029 3.971 21 N -0.917 5.917 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.281 1.281 25 H -0.279 1.279 26 C 0.108 3.892 27 C 0.098 3.902 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.379 0.621 42 H 0.272 0.728 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.091 0.909 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 -14.350 -13.588 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.145 4.145 3 H 0.061 0.939 4 C -0.013 4.013 5 O -0.311 6.311 6 C -0.027 4.027 7 C -0.046 4.046 8 N -0.302 5.302 9 C 0.287 3.713 10 O -0.415 6.415 11 C 0.281 3.719 12 O -0.415 6.415 13 N -0.316 5.316 14 C -0.001 4.001 15 C -0.153 4.153 16 C 0.193 3.807 17 O -0.399 6.399 18 C -0.594 4.594 19 H 0.088 0.912 20 C -0.172 4.172 21 N -0.556 5.556 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.014 4.014 27 C -0.024 4.024 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.138 0.862 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.230 0.770 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.946 -14.460 -13.852 20.239 hybrid contribution -1.271 1.168 0.797 1.901 sum 1.675 -13.292 -13.055 18.706 Atomic orbital electron populations 1.21548 0.92244 1.02973 1.02049 1.21330 0.97880 0.99738 0.95538 0.93901 1.21782 0.80311 1.01650 0.97542 1.87492 1.21104 1.48481 1.73981 1.23095 1.00588 0.88653 0.90331 1.23091 0.91800 0.93989 0.95680 1.47694 1.08696 1.25057 1.48770 1.20095 0.87982 0.82966 0.80252 1.90680 1.17166 1.75781 1.57852 1.20165 0.88579 0.82790 0.80324 1.90638 1.18112 1.73738 1.59001 1.48682 1.12038 1.26621 1.44306 1.22094 0.81329 0.98630 0.98041 1.22725 0.96875 0.97171 0.98559 1.19869 0.90792 0.87768 0.82230 1.86080 1.35918 1.65510 1.52395 1.21825 0.97927 0.94054 1.45574 0.91164 1.25806 0.95901 1.01623 0.93883 1.69662 1.05461 1.33871 1.46645 0.85369 0.78191 0.79491 0.77754 1.18951 1.20640 1.20503 1.23082 0.94851 0.87325 0.96180 1.22272 0.78190 1.01544 1.00409 0.90223 0.93727 0.91680 0.90154 0.89221 0.89725 0.86244 0.88238 0.90127 0.91710 0.90229 0.89707 0.89048 0.77037 0.91824 0.92592 0.92636 0.89072 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.15 71.98 0.66 -1.99 16 2 C -0.12 -2.96 2.14 -11.82 -0.03 -2.98 16 3 H 0.04 1.38 7.30 -2.39 -0.02 1.36 16 4 C 0.06 1.14 5.26 70.32 0.37 1.51 16 5 O -0.39 -8.45 10.23 -144.98 -1.48 -9.94 16 6 C 0.05 0.74 6.50 72.42 0.47 1.21 16 7 C 0.08 1.50 6.52 86.50 0.56 2.06 16 8 N -0.57 -15.71 2.55 -817.86 -2.09 -17.80 16 9 C 0.50 18.08 7.63 87.27 0.67 18.74 16 10 O -0.54 -20.44 13.51 -3.22 -0.04 -20.49 16 11 C 0.50 20.52 7.68 87.27 0.67 21.19 16 12 O -0.54 -22.69 12.02 -3.26 -0.04 -22.73 16 13 N -0.58 -25.52 3.32 -812.90 -2.70 -28.23 16 14 C 0.12 4.80 5.49 86.73 0.48 5.28 16 15 C -0.12 -4.75 6.12 31.78 0.19 -4.55 16 16 C 0.23 11.53 0.89 -10.07 -0.01 11.53 16 17 O -0.59 -31.01 13.19 -148.98 -1.97 -32.97 16 18 C -0.56 -28.85 8.25 25.60 0.21 -28.64 16 19 H 0.07 3.54 7.76 -2.91 -0.02 3.52 16 20 C 0.03 1.47 5.30 84.66 0.45 1.92 16 21 N -0.92 -48.83 10.72 21.45 0.23 -48.60 16 22 Si 0.97 41.21 29.54 68.60 2.03 43.24 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.11 5.26 5.65 86.93 0.49 5.76 16 27 C 0.10 2.42 4.29 87.40 0.38 2.79 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 0.96 7.28 -2.39 -0.02 0.94 16 32 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.08 0.77 7.21 -2.39 -0.02 0.76 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.90 7.09 -2.39 -0.02 1.88 16 37 H 0.06 2.59 7.73 -2.38 -0.02 2.57 16 38 H 0.08 2.93 7.57 -2.38 -0.02 2.91 16 39 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.09 3.47 8.01 -2.39 -0.02 3.45 16 41 H 0.38 20.66 6.93 -74.06 -0.51 20.15 16 42 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 43 H 0.06 2.79 8.04 -2.39 -0.02 2.77 16 44 H 0.06 3.02 7.64 -2.39 -0.02 3.00 16 45 H 0.09 2.83 5.31 -2.48 -0.01 2.82 16 46 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -64.38 358.51 -0.02 -64.41 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: 0.48 Total: 39.29 kcal Atomic # 6 Polarization: 28.26 SS G_CDS: 5.56 Total: 33.82 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -4.56 Total: -94.62 kcal Atomic # 8 Polarization: -82.59 SS G_CDS: -3.53 Total: -86.12 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -64.38 -0.02 -64.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352988216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.303 kcal (2) G-P(sol) polarization free energy of solvation -64.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds