Wall clock time and date at job start Fri Apr 10 2020 18:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47263 * 2 1 4 4 C 1.50700 * 109.46717 * 240.00142 * 2 1 3 5 5 O 1.21284 * 119.99871 * 261.23216 * 4 2 1 6 6 N 1.34782 * 120.00200 * 81.24043 * 4 2 1 7 7 C 1.46925 * 120.62670 * 354.62405 * 6 4 2 8 8 C 1.53194 * 108.77559 * 126.36993 * 7 6 4 9 9 C 1.53044 * 109.31124 * 54.63440 * 8 7 6 10 10 C 1.53037 * 109.53704 * 298.63465 * 9 8 7 11 11 H 1.09001 * 109.49847 * 301.41706 * 10 9 8 12 12 C 1.50694 * 109.49944 * 181.31693 * 10 9 8 13 13 O 1.20826 * 120.00371 * 240.00496 * 12 10 9 14 14 O 1.34231 * 119.99971 * 59.99494 * 12 10 9 15 15 C 1.46921 * 120.63455 * 174.34800 * 6 4 2 16 16 N 1.46895 * 109.47415 * 120.00158 * 2 1 3 17 17 C 1.47961 * 111.00221 * 190.68481 * 16 2 1 18 18 C 1.53942 * 86.30246 * 137.63653 * 17 16 2 19 19 O 1.42902 * 113.72782 * 90.69268 * 18 17 16 20 20 C 1.50692 * 113.73570 * 221.86794 * 18 17 16 21 21 H 1.07998 * 120.00132 * 0.02562 * 20 18 17 22 22 C 1.37880 * 120.00125 * 180.02562 * 20 18 17 23 23 N 1.31513 * 119.99869 * 0.02562 * 22 20 18 24 24 Si 1.86804 * 120.00236 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46841 * 89.99730 * 24 22 20 26 26 H 1.48494 * 109.47300 * 210.00327 * 24 22 20 27 27 H 1.48502 * 109.46970 * 330.00114 * 24 22 20 28 28 C 1.48304 * 111.10877 * 289.93645 * 16 2 1 29 29 H 1.09011 * 109.46738 * 305.58809 * 1 2 3 30 30 H 1.08998 * 109.47734 * 65.58322 * 1 2 3 31 31 H 1.08999 * 109.47601 * 185.59113 * 1 2 3 32 32 H 1.09004 * 109.58864 * 246.16040 * 7 6 4 33 33 H 1.09004 * 109.59038 * 6.58025 * 7 6 4 34 34 H 1.08999 * 109.49787 * 174.58113 * 8 7 6 35 35 H 1.08998 * 109.50030 * 294.68296 * 8 7 6 36 36 H 1.08999 * 109.45789 * 58.65608 * 9 8 7 37 37 H 1.09001 * 109.45796 * 178.61155 * 9 8 7 38 38 H 0.96701 * 117.00118 * 180.02562 * 14 12 10 39 39 H 1.09001 * 109.58376 * 353.41353 * 15 6 4 40 40 H 1.08994 * 109.58921 * 113.84089 * 15 6 4 41 41 H 1.09000 * 113.75789 * 23.26906 * 17 16 2 42 42 H 1.08999 * 113.76509 * 252.01176 * 17 16 2 43 43 H 0.96708 * 113.99410 * 180.02562 * 19 18 17 44 44 H 0.97001 * 119.99966 * 179.97438 * 23 22 20 45 45 H 1.09003 * 113.75689 * 108.13514 * 28 16 2 46 46 H 1.09000 * 113.85705 * 336.79343 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.3852 -1.8686 -1.1604 6 7 2.0892 -0.0586 -2.4089 7 6 1.5568 1.3048 -2.5367 8 6 2.6490 2.2081 -3.1181 9 6 3.1581 1.6066 -4.4300 10 6 3.7648 0.2279 -4.1595 11 1 4.5786 0.3233 -3.4406 12 6 4.2948 -0.3498 -5.4464 13 8 3.8574 -1.3956 -5.8646 14 8 5.2528 0.2976 -6.1284 15 6 2.6903 -0.6957 -3.5885 16 7 2.0197 -0.6925 1.1994 17 6 3.4762 -0.4944 1.3685 18 6 3.1739 -0.2903 2.8641 19 8 3.2270 -1.4949 3.6311 20 6 3.9491 0.8397 3.4909 21 1 4.6388 1.4179 2.8938 22 6 3.7779 1.1356 4.8266 23 7 2.9385 0.4313 5.5538 24 14 4.7394 2.5360 5.6038 25 1 3.9643 3.7967 5.4806 26 1 4.9750 2.2379 7.0393 27 1 6.0432 2.6867 4.9091 28 6 1.7530 0.1034 2.4220 29 1 -0.3633 0.5981 0.8358 30 1 -0.3634 0.4248 -0.9357 31 1 -0.3634 -1.0227 0.1001 32 1 0.6941 1.2993 -3.2029 33 1 1.2606 1.6750 -1.5551 34 1 2.2382 3.1997 -3.3078 35 1 3.4733 2.2849 -2.4091 36 1 2.3284 1.5072 -5.1299 37 1 3.9180 2.2601 -4.8584 38 1 5.5607 -0.1117 -6.9485 39 1 3.1418 -1.6451 -3.3007 40 1 1.9220 -0.8677 -4.3422 41 1 3.8587 0.3975 0.8721 42 1 4.0680 -1.3851 1.1576 43 1 3.0373 -1.3711 4.5713 44 1 2.8183 0.6392 6.4936 45 1 0.9662 -0.3107 3.0526 46 1 1.6308 1.1704 2.2355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573398048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:50 Heat of formation + Delta-G solvation = -135.326875 kcal Electronic energy + Delta-G solvation = -29261.169453 eV Core-core repulsion = 25152.043506 eV Total energy + Delta-G solvation = -4109.125948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04885 -40.15787 -38.73025 -37.20582 -36.44435 -34.58756 -33.38430 -32.10839 -31.87477 -31.18238 -26.97357 -26.22557 -25.35522 -24.99133 -24.27246 -22.34488 -22.00475 -20.39897 -19.06555 -18.65314 -18.29610 -17.44286 -17.14462 -16.72900 -16.09650 -15.83662 -15.22430 -15.08079 -14.91078 -14.66043 -14.31456 -14.03529 -13.88079 -13.71447 -13.45464 -13.10218 -13.07573 -12.69484 -12.34802 -12.14401 -11.93047 -11.85767 -11.73394 -11.57649 -11.46503 -11.36455 -11.34142 -11.04993 -11.01754 -10.96948 -10.69073 -10.56957 -10.37830 -10.09608 -9.37073 -9.27310 -8.74338 -8.65564 -8.18947 -7.80453 -6.27407 -4.38040 1.86051 2.44977 2.84857 3.08986 3.17055 3.25499 3.28735 4.17697 4.23322 4.34522 4.45654 4.60001 4.65592 4.72785 4.89145 4.96480 5.03987 5.12259 5.21911 5.28912 5.38846 5.41716 5.50832 5.52688 5.64026 5.65172 5.75856 5.89754 5.91418 6.00735 6.03258 6.14276 6.27771 6.31431 6.39906 6.40866 6.76661 7.01610 7.15347 7.30223 7.38248 7.54431 7.74924 7.91963 7.99596 8.38833 8.63920 9.32277 9.69208 10.78037 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.016772 B = 0.003155 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.041582 B = 8873.503041 C = 9330.036787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.030 3.970 3 H 0.063 0.937 4 C 0.525 3.475 5 O -0.509 6.509 6 N -0.621 5.621 7 C 0.101 3.899 8 C -0.136 4.136 9 C -0.109 4.109 10 C -0.097 4.097 11 H 0.115 0.885 12 C 0.489 3.511 13 O -0.511 6.511 14 O -0.515 6.515 15 C 0.130 3.870 16 N -0.453 5.453 17 C 0.012 3.988 18 C 0.247 3.753 19 O -0.570 6.570 20 C -0.538 4.538 21 H 0.065 0.935 22 C 0.071 3.929 23 N -0.896 5.896 24 Si 0.903 3.097 25 H -0.279 1.279 26 H -0.283 1.283 27 H -0.272 1.272 28 C -0.012 4.012 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.410 0.590 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.388 0.612 44 H 0.271 0.729 45 H 0.076 0.924 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 7.029 -19.737 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 H 0.081 0.919 4 C 0.313 3.687 5 O -0.381 6.381 6 N -0.358 5.358 7 C -0.022 4.022 8 C -0.174 4.174 9 C -0.147 4.147 10 C -0.117 4.117 11 H 0.133 0.867 12 C 0.330 3.670 13 O -0.399 6.399 14 O -0.326 6.326 15 C 0.007 3.993 16 N -0.176 5.176 17 C -0.117 4.117 18 C 0.205 3.795 19 O -0.381 6.381 20 C -0.576 4.576 21 H 0.083 0.917 22 C -0.131 4.131 23 N -0.537 5.537 24 Si 0.730 3.270 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.197 1.197 28 C -0.140 4.140 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.269 0.731 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.243 0.757 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.475 5.312 -19.880 20.726 hybrid contribution 0.831 1.755 0.251 1.958 sum -1.644 7.068 -19.629 20.927 Atomic orbital electron populations 1.21716 0.92416 1.03622 1.01731 1.22255 0.97554 0.96491 0.91897 0.91923 1.20795 0.77415 0.87012 0.83518 1.90702 1.46463 1.16428 1.84527 1.48135 1.61301 1.16360 1.09957 1.21883 0.96085 0.81455 1.02790 1.21965 0.99563 0.99109 0.96809 1.21513 1.01120 0.93547 0.98473 1.21366 1.00401 0.97755 0.92196 0.86669 1.23270 0.76099 0.82117 0.85492 1.90753 1.57461 1.23184 1.68456 1.84530 1.53091 1.54985 1.40036 1.21173 0.94636 0.96018 0.87495 1.68756 1.07600 1.42226 0.99065 1.24116 0.89587 0.99614 0.98357 1.19685 0.89255 0.83787 0.86745 1.86078 1.93433 1.32318 1.26289 1.21643 1.25268 1.15282 0.95424 0.91711 1.25059 0.94445 0.96594 0.96964 1.69348 1.35619 1.40422 1.08318 0.86419 0.80321 0.81707 0.78535 1.20459 1.20890 1.19695 1.24827 1.03398 0.95206 0.90604 0.91246 0.92496 0.91177 0.91093 0.88794 0.89742 0.90635 0.91073 0.90057 0.73069 0.88115 0.90658 0.92303 0.90455 0.75664 0.91842 0.90601 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.85 37.16 0.33 -1.59 16 2 C 0.03 0.51 1.20 -68.87 -0.08 0.42 16 3 H 0.06 0.96 6.29 -51.93 -0.33 0.64 16 4 C 0.52 8.86 6.45 -10.98 -0.07 8.79 16 5 O -0.51 -10.82 15.81 5.55 0.09 -10.73 16 6 N -0.62 -7.81 2.98 -173.03 -0.52 -8.33 16 7 C 0.10 0.89 5.58 -3.71 -0.02 0.87 16 8 C -0.14 -0.97 6.08 -26.61 -0.16 -1.13 16 9 C -0.11 -0.77 5.11 -26.69 -0.14 -0.90 16 10 C -0.10 -0.91 2.76 -91.88 -0.25 -1.17 16 11 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 12 C 0.49 4.79 7.63 36.00 0.27 5.07 16 13 O -0.51 -6.63 16.68 -18.75 -0.31 -6.94 16 14 O -0.51 -3.65 13.30 -39.26 -0.52 -4.18 16 15 C 0.13 1.56 5.03 -3.93 -0.02 1.54 16 16 N -0.45 -9.69 5.60 -230.57 -1.29 -10.99 16 17 C 0.01 0.27 6.67 -2.76 -0.02 0.25 16 18 C 0.25 6.28 1.44 -90.83 -0.13 6.15 16 19 O -0.57 -15.78 13.50 -35.23 -0.48 -16.26 16 20 C -0.54 -14.16 8.62 -34.44 -0.30 -14.46 16 21 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 22 C 0.07 1.85 5.39 -17.82 -0.10 1.76 16 23 N -0.90 -23.73 11.08 55.43 0.61 -23.12 16 24 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 C -0.01 -0.26 6.58 -2.58 -0.02 -0.28 16 29 H 0.07 0.94 7.69 -51.92 -0.40 0.54 16 30 H 0.06 0.62 6.96 -51.93 -0.36 0.26 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.83 5.01 -51.93 -0.26 0.57 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.41 1.24 9.10 45.56 0.41 1.65 16 39 H 0.10 1.49 7.04 -51.93 -0.37 1.12 16 40 H 0.08 0.86 7.94 -51.93 -0.41 0.45 16 41 H 0.06 1.24 7.73 -51.93 -0.40 0.83 16 42 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 43 H 0.39 10.80 6.42 45.56 0.29 11.09 16 44 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 46 H 0.06 1.28 7.76 -51.93 -0.40 0.88 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -33.33 368.49 -8.16 -41.48 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -5.57 Total: 13.21 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.70 Total: 5.32 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -1.19 Total: -42.43 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.22 Total: -38.11 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.33 -8.16 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573398048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.843 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds