Wall clock time and date at job start Fri Apr 10 2020 18:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47063 * 2 1 4 4 C 1.50698 * 109.47585 * 119.99747 * 2 1 3 5 5 O 1.21284 * 119.99727 * 111.53476 * 4 2 1 6 6 N 1.34769 * 120.00289 * 291.53600 * 4 2 1 7 7 C 1.46927 * 120.62796 * 356.51899 * 6 4 2 8 8 C 1.52765 * 109.00438 * 233.58102 * 7 6 4 9 9 C 1.53037 * 109.38446 * 305.58351 * 8 7 6 10 10 C 1.53046 * 109.53442 * 61.24571 * 9 8 7 11 11 H 1.08999 * 109.50190 * 58.58367 * 10 9 8 12 12 C 1.50701 * 109.52364 * 178.66917 * 10 9 8 13 13 O 1.20826 * 120.00435 * 119.84941 * 12 10 9 14 14 O 1.34230 * 119.99664 * 299.84905 * 12 10 9 15 15 C 1.46930 * 120.63327 * 176.79278 * 6 4 2 16 16 N 1.46899 * 109.47020 * 240.00316 * 2 1 3 17 17 C 1.47955 * 111.00452 * 63.04049 * 16 2 1 18 18 C 1.53937 * 86.18328 * 222.41753 * 17 16 2 19 19 O 1.42891 * 113.73649 * 269.25640 * 18 17 16 20 20 C 1.50699 * 113.73133 * 138.07764 * 18 17 16 21 21 H 1.08003 * 120.00469 * 1.89683 * 20 18 17 22 22 C 1.37875 * 119.99959 * 181.62713 * 20 18 17 23 23 N 1.31520 * 119.99823 * 0.27364 * 22 20 18 24 24 Si 1.86796 * 120.00381 * 180.27368 * 22 20 18 25 25 H 1.48503 * 109.47141 * 89.99947 * 24 22 20 26 26 H 1.48497 * 109.47351 * 210.00020 * 24 22 20 27 27 H 1.48500 * 109.47096 * 329.99960 * 24 22 20 28 28 C 1.48192 * 111.06810 * 323.60679 * 16 2 1 29 29 H 1.09008 * 109.47076 * 189.69647 * 1 2 3 30 30 H 1.09001 * 109.47280 * 309.69227 * 1 2 3 31 31 H 1.09002 * 109.47613 * 69.69340 * 1 2 3 32 32 H 1.09000 * 109.58901 * 353.41421 * 7 6 4 33 33 H 1.08996 * 109.59099 * 113.84544 * 7 6 4 34 34 H 1.09003 * 109.56195 * 185.55054 * 8 7 6 35 35 H 1.09000 * 109.35701 * 65.49864 * 8 7 6 36 36 H 1.08996 * 109.46538 * 301.22466 * 9 8 7 37 37 H 1.09001 * 109.46214 * 181.25805 * 9 8 7 38 38 H 0.96703 * 117.00418 * 180.02562 * 14 12 10 39 39 H 1.09004 * 109.58720 * 246.16003 * 15 6 4 40 40 H 1.08994 * 109.58393 * 6.58074 * 15 6 4 41 41 H 1.08998 * 113.76380 * 108.09769 * 17 16 2 42 42 H 1.09003 * 113.85994 * 336.74947 * 17 16 2 43 43 H 0.96699 * 114.00379 * 178.10455 * 19 18 17 44 44 H 0.96999 * 119.99833 * 179.97438 * 23 22 20 45 45 H 1.08997 * 113.75898 * 23.23955 * 28 16 2 46 46 H 1.09003 * 113.82573 * 251.81119 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.5981 -1.7780 1.1257 6 7 1.8532 -0.1592 2.4472 7 6 1.2382 1.1681 2.5845 8 6 2.1599 2.0600 3.4142 9 6 2.4713 1.3706 4.7446 10 6 3.1896 0.0456 4.4785 11 1 4.1070 0.2347 3.9210 12 6 3.5252 -0.6175 5.7895 13 8 3.0791 -1.7109 6.0451 14 8 4.3197 0.0066 6.6732 15 6 2.2745 -0.8716 3.6612 16 7 2.0196 -0.6924 -1.1995 17 6 1.6060 0.0195 -2.4288 18 6 1.2905 -1.3725 -3.0054 19 8 2.3888 -1.9714 -3.6961 20 6 0.0041 -1.4273 -3.7884 21 1 -0.5831 -0.5314 -3.9259 22 6 -0.4205 -2.6202 -4.3341 23 7 0.2944 -3.7113 -4.1666 24 14 -2.0112 -2.6867 -5.3111 25 1 -1.7239 -2.4199 -6.7434 26 1 -2.6222 -4.0329 -5.1712 27 1 -2.9522 -1.6601 -4.7954 28 6 1.1477 -1.8396 -1.5456 29 1 -0.3634 -1.0131 0.1731 30 1 -0.3634 0.6563 0.7908 31 1 -0.3634 0.3566 -0.9638 32 1 1.0965 1.6091 1.5977 33 1 0.2755 1.0746 3.0869 34 1 1.6693 3.0145 3.6052 35 1 3.0870 2.2301 2.8668 36 1 1.5418 1.1784 5.2804 37 1 3.1108 2.0157 5.3470 38 1 4.5070 -0.4584 7.5002 39 1 1.3979 -1.1349 4.2531 40 1 2.8162 -1.7760 3.3846 41 1 2.4239 0.5302 -2.9368 42 1 0.7267 0.6503 -2.2983 43 1 2.2041 -2.8580 -4.0349 44 1 -0.0045 -4.5506 -4.5502 45 1 0.1339 -1.7544 -1.1544 46 1 1.6002 -2.8116 -1.3493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573398050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:55 Heat of formation + Delta-G solvation = -153.466797 kcal Electronic energy + Delta-G solvation = -29189.313411 eV Core-core repulsion = 25079.400858 eV Total energy + Delta-G solvation = -4109.912554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.05998 -41.42969 -40.26016 -38.26555 -37.18272 -36.47310 -34.45705 -34.09508 -32.78081 -32.01516 -28.87100 -27.24185 -26.87445 -26.17441 -26.01496 -23.56204 -22.80091 -21.39343 -20.28901 -19.87811 -19.20915 -19.03110 -18.41674 -17.62577 -17.17470 -17.01246 -16.86807 -16.44951 -16.29168 -15.99192 -15.56126 -15.35424 -15.15573 -14.62168 -14.58795 -14.44088 -14.20090 -13.90914 -13.82117 -13.57583 -13.43641 -13.02062 -12.84630 -12.73800 -12.62573 -12.55420 -12.48134 -12.32394 -12.18294 -12.11429 -12.00273 -11.84838 -11.69004 -11.43974 -11.12458 -10.69165 -10.59751 -10.06548 -9.74681 -9.42884 -8.20464 -6.39348 1.10033 1.43901 1.45248 1.55215 1.55841 1.66774 2.24473 2.39373 2.99805 3.16925 3.36833 3.55714 3.69960 3.84300 3.97399 3.98626 4.04611 4.11534 4.15431 4.27427 4.37216 4.39406 4.47517 4.48384 4.62925 4.70295 4.73115 4.75377 4.87244 4.90225 4.96006 5.04924 5.11422 5.20580 5.24243 5.35183 5.44132 5.46179 5.52688 5.55986 5.77833 6.01201 6.20152 6.42375 6.67690 6.91463 7.19551 7.33943 7.52108 8.84437 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025205 B = 0.002785 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.607216 B =10051.978723 C =10299.984193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.030 3.970 3 H 0.132 0.868 4 C 0.521 3.479 5 O -0.574 6.574 6 N -0.608 5.608 7 C 0.088 3.912 8 C -0.128 4.128 9 C -0.104 4.104 10 C -0.090 4.090 11 H 0.114 0.886 12 C 0.495 3.505 13 O -0.552 6.552 14 O -0.504 6.504 15 C 0.129 3.871 16 N -0.475 5.475 17 C 0.021 3.979 18 C 0.216 3.784 19 O -0.588 6.588 20 C -0.552 4.552 21 H 0.074 0.926 22 C 0.021 3.979 23 N -0.924 5.924 24 Si 0.969 3.031 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.260 1.260 28 C 0.000 4.000 29 H 0.043 0.957 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.429 0.571 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.380 0.620 44 H 0.271 0.729 45 H 0.079 0.921 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 16.757 20.687 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.083 4.083 3 H 0.149 0.851 4 C 0.310 3.690 5 O -0.451 6.451 6 N -0.342 5.342 7 C -0.032 4.032 8 C -0.166 4.166 9 C -0.141 4.141 10 C -0.110 4.110 11 H 0.132 0.868 12 C 0.338 3.662 13 O -0.442 6.442 14 O -0.318 6.318 15 C 0.005 3.995 16 N -0.198 5.198 17 C -0.107 4.107 18 C 0.175 3.825 19 O -0.399 6.399 20 C -0.590 4.590 21 H 0.092 0.908 22 C -0.179 4.179 23 N -0.564 5.564 24 Si 0.794 3.206 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.184 1.184 28 C -0.129 4.129 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.291 0.709 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.232 0.768 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.477 16.389 20.614 26.376 hybrid contribution -1.288 -1.859 -0.202 2.271 sum 0.189 14.529 20.412 25.056 Atomic orbital electron populations 1.22441 0.93235 1.02693 1.04957 1.22229 0.96104 0.99753 0.90173 0.85099 1.20942 0.77860 0.85141 0.85064 1.90693 1.43339 1.24550 1.86529 1.48104 1.61445 1.20445 1.04221 1.22246 0.97249 0.80486 1.03265 1.21891 1.00675 0.99407 0.94627 1.21559 1.01107 0.92315 0.99125 1.21370 1.01861 0.97989 0.89825 0.86791 1.23343 0.74037 0.82854 0.85947 1.90757 1.52393 1.22794 1.78283 1.84473 1.62759 1.52270 1.32280 1.21204 0.98512 0.94483 0.85277 1.68540 1.45555 1.05397 1.00296 1.24183 0.99912 0.96599 0.89971 1.20195 0.84833 0.89782 0.87694 1.86018 1.40954 1.36954 1.75956 1.21920 1.06714 0.95737 1.34651 0.90780 1.25908 1.00728 0.94942 0.96303 1.69561 1.40613 1.00458 1.45813 0.85387 0.79013 0.77487 0.78709 1.20181 1.21225 1.18397 1.24620 0.95028 0.93565 0.99730 0.93750 0.87653 0.90303 0.87785 0.89050 0.86462 0.91191 0.90208 0.88312 0.70879 0.90269 0.92030 0.90427 0.88305 0.76765 0.91986 0.90348 0.95503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.73 7.45 71.98 0.54 -4.19 16 2 C 0.03 0.93 1.96 44.17 0.09 1.02 16 3 H 0.13 3.15 7.07 -2.39 -0.02 3.13 16 4 C 0.52 17.87 6.95 87.66 0.61 18.48 16 5 O -0.57 -26.61 15.48 -3.04 -0.05 -26.66 16 6 N -0.61 -14.44 2.98 -819.73 -2.44 -16.88 16 7 C 0.09 1.13 5.18 86.22 0.45 1.58 16 8 C -0.13 -1.03 6.06 30.53 0.19 -0.84 16 9 C -0.10 -0.98 5.11 30.62 0.16 -0.82 16 10 C -0.09 -1.52 2.78 -11.46 -0.03 -1.55 16 11 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 12 C 0.50 9.06 7.63 71.24 0.54 9.60 16 13 O -0.55 -14.53 16.68 21.96 0.37 -14.17 16 14 O -0.50 -5.76 13.31 -51.42 -0.68 -6.44 16 15 C 0.13 3.12 5.07 86.36 0.44 3.56 16 16 N -0.48 -20.49 5.78 -889.27 -5.14 -25.64 16 17 C 0.02 0.89 7.13 86.41 0.62 1.51 16 18 C 0.22 11.20 1.40 -10.89 -0.02 11.19 16 19 O -0.59 -34.07 13.48 -148.98 -2.01 -36.08 16 20 C -0.55 -29.13 8.61 25.60 0.22 -28.91 16 21 H 0.07 3.67 7.81 -2.91 -0.02 3.64 16 22 C 0.02 1.09 5.39 84.65 0.46 1.55 16 23 N -0.92 -52.00 11.19 21.45 0.24 -51.76 16 24 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 25 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 28 C 0.00 -0.01 6.57 86.37 0.57 0.55 16 29 H 0.04 1.45 6.38 -2.38 -0.02 1.43 16 30 H 0.10 1.84 6.14 -2.39 -0.01 1.82 16 31 H 0.08 2.21 6.00 -2.39 -0.01 2.19 16 32 H 0.10 1.15 4.85 -2.39 -0.01 1.14 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 0.66 8.09 -2.39 -0.02 0.64 16 38 H 0.43 1.50 9.10 -74.06 -0.67 0.83 16 39 H 0.08 1.85 7.96 -2.39 -0.02 1.83 16 40 H 0.06 2.01 7.00 -2.39 -0.02 1.99 16 41 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.10 3.47 6.01 -2.39 -0.01 3.46 16 43 H 0.38 22.70 6.59 -74.06 -0.49 22.21 16 44 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 45 H 0.08 3.74 4.92 -2.39 -0.01 3.73 16 46 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -79.79 360.29 -3.00 -82.79 By element: Atomic # 1 Polarization: 38.51 SS G_CDS: -0.12 Total: 38.39 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 4.82 Total: 12.73 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -7.34 Total: -94.28 kcal Atomic # 8 Polarization: -80.97 SS G_CDS: -2.37 Total: -83.34 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -79.79 -3.00 -82.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573398050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.672 kcal (2) G-P(sol) polarization free energy of solvation -79.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds