Wall clock time and date at job start Fri Apr 10 2020 18:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.75324 * 2 1 4 4 C 1.55410 * 111.05941 * 236.48756 * 2 1 3 5 5 C 1.54947 * 100.89434 * 207.67868 * 4 2 1 6 6 H 1.08998 * 110.30875 * 277.36311 * 5 4 2 7 7 C 1.50700 * 110.31218 * 155.28770 * 5 4 2 8 8 O 1.21283 * 119.99803 * 246.38845 * 7 5 4 9 9 N 1.34777 * 119.99675 * 66.66720 * 7 5 4 10 10 C 1.47079 * 120.88183 * 359.44105 * 9 7 5 11 11 C 1.53702 * 108.27100 * 128.75969 * 10 9 7 12 12 N 1.46903 * 109.25750 * 54.08389 * 11 10 9 13 13 C 1.46895 * 110.99692 * 172.60684 * 12 11 10 14 14 C 1.50705 * 109.47164 * 294.29851 * 13 12 11 15 15 H 1.07997 * 119.99840 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99848 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00056 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00070 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47477 * 89.99325 * 18 16 14 20 20 H 1.48489 * 109.47119 * 209.99907 * 18 16 14 21 21 H 1.48507 * 109.46780 * 329.99884 * 18 16 14 22 22 C 1.46897 * 111.26549 * 296.75556 * 12 11 10 23 23 C 1.47082 * 120.87981 * 179.72731 * 9 7 5 24 24 O 1.43650 * 105.22145 * 36.32154 * 5 4 2 25 25 C 1.43232 * 109.97233 * 335.62486 * 24 5 4 26 26 H 1.08990 * 109.83247 * 121.31594 * 25 24 5 27 27 C 1.50704 * 109.83043 * 242.19647 * 25 24 5 28 28 O 1.20828 * 120.00104 * 3.54811 * 27 25 24 29 29 O 1.34226 * 120.00227 * 183.54324 * 27 25 24 30 30 H 1.08996 * 109.47565 * 297.99028 * 1 2 3 31 31 H 1.08999 * 109.46952 * 57.98518 * 1 2 3 32 32 H 1.08999 * 109.47510 * 177.97924 * 1 2 3 33 33 H 1.08995 * 111.20914 * 89.74884 * 4 2 1 34 34 H 1.09001 * 111.08714 * 325.55263 * 4 2 1 35 35 H 1.08993 * 109.62875 * 248.52263 * 10 9 7 36 36 H 1.08998 * 109.63018 * 9.11040 * 10 9 7 37 37 H 1.09000 * 109.64799 * 294.08078 * 11 10 9 38 38 H 1.08999 * 109.43773 * 173.96219 * 11 10 9 39 39 H 1.08998 * 109.47333 * 54.29830 * 13 12 11 40 40 H 1.08997 * 109.47100 * 174.30287 * 13 12 11 41 41 H 0.96995 * 119.99631 * 179.97438 * 17 16 14 42 42 H 1.09007 * 109.49363 * 303.14281 * 22 12 11 43 43 H 1.09003 * 109.51357 * 183.07886 * 22 12 11 44 44 H 1.09007 * 109.62636 * 350.89271 * 23 9 7 45 45 H 1.08995 * 109.63057 * 111.46977 * 23 9 7 46 46 H 0.96699 * 117.00389 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9162 1.0193 0.0000 4 6 2.0884 -0.8007 -1.2092 5 6 3.4511 -1.2736 -0.6432 6 1 4.1975 -0.4860 -0.7465 7 6 3.9075 -2.5222 -1.3529 8 8 3.9804 -3.5711 -0.7484 9 7 4.2401 -2.4720 -2.6581 10 6 4.1530 -1.2117 -3.4113 11 6 5.4946 -0.9838 -4.1259 12 7 5.8212 -2.1675 -4.9323 13 6 7.0048 -1.9250 -5.7679 14 6 6.6897 -0.8623 -6.7889 15 1 5.7084 -0.4119 -6.8143 16 6 7.6541 -0.4652 -7.6907 17 7 8.8492 -1.0134 -7.6595 18 14 7.2638 0.8526 -8.9559 19 1 7.5906 2.1886 -8.3962 20 1 8.0707 0.6178 -10.1801 21 1 5.8195 0.7988 -9.2971 22 6 6.0082 -3.3536 -4.0861 23 6 4.6937 -3.6774 -3.3684 24 8 3.2072 -1.5502 0.7452 25 6 2.0793 -0.7957 1.2036 26 1 1.3125 -1.4708 1.5833 27 6 2.5080 0.1546 2.2919 28 8 3.6736 0.2336 2.6004 29 8 1.5951 0.9132 2.9185 30 1 -0.3634 0.4823 0.9074 31 1 -0.3633 0.5448 -0.8714 32 1 -0.3634 -1.0270 -0.0362 33 1 2.2259 -0.1576 -2.0784 34 1 1.4467 -1.6488 -1.4480 35 1 3.3504 -1.2787 -4.1456 36 1 3.9576 -0.3877 -2.7251 37 1 6.2796 -0.8186 -3.3879 38 1 5.4163 -0.1118 -4.7751 39 1 7.8309 -1.5917 -5.1397 40 1 7.2848 -2.8468 -6.2776 41 1 9.5275 -0.7342 -8.2941 42 1 6.7861 -3.1553 -3.3486 43 1 6.3022 -4.2005 -4.7061 44 1 4.8558 -4.4843 -2.6537 45 1 3.9419 -3.9768 -4.0986 46 1 1.9177 1.5072 3.6100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599874996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:59 Heat of formation + Delta-G solvation = -154.643263 kcal Electronic energy + Delta-G solvation = -28776.422375 eV Core-core repulsion = 24666.458805 eV Total energy + Delta-G solvation = -4109.963569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33299 -40.18229 -38.90461 -37.39707 -36.43983 -34.60923 -34.03647 -32.57300 -31.60510 -30.30683 -28.29774 -27.68897 -25.91336 -24.54123 -23.36254 -22.27315 -21.81428 -21.32570 -20.43669 -18.84856 -18.68038 -17.78041 -17.21128 -16.55858 -16.40340 -16.08853 -15.84848 -15.45260 -14.92215 -14.75525 -14.48713 -14.17548 -14.07488 -13.86535 -13.70334 -13.50267 -13.48949 -12.89950 -12.81511 -12.49501 -12.22259 -11.98377 -11.94469 -11.87049 -11.63935 -11.35348 -11.34243 -11.14998 -11.02768 -10.95039 -10.80211 -10.65306 -10.58013 -10.21493 -9.93246 -9.50895 -9.32084 -8.57510 -8.48707 -7.38578 -6.09863 -4.12338 1.79911 2.24192 2.55661 2.87639 3.26202 3.33278 3.36236 3.50751 3.75505 4.16435 4.30148 4.35034 4.43473 4.60477 4.68392 4.79297 4.82466 4.89856 5.12524 5.15489 5.20985 5.26123 5.32140 5.36161 5.39698 5.48093 5.57851 5.60006 5.68898 5.73776 5.79503 5.96550 6.09769 6.23034 6.28593 6.38578 6.41371 6.62261 7.17074 7.23833 7.42902 7.53045 7.69493 7.96544 8.07143 8.16903 8.42416 8.94671 9.52370 11.00947 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.002739 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.715812 B =10218.861873 C =10855.100759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.095 0.905 4 C -0.143 4.143 5 C 0.061 3.939 6 H 0.102 0.898 7 C 0.517 3.483 8 O -0.528 6.528 9 N -0.603 5.603 10 C 0.104 3.896 11 C 0.048 3.952 12 N -0.535 5.535 13 C 0.193 3.807 14 C -0.511 4.511 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.040 3.960 23 C 0.120 3.880 24 O -0.319 6.319 25 C 0.093 3.907 26 H 0.125 0.875 27 C 0.464 3.536 28 O -0.494 6.494 29 O -0.514 6.514 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.026 0.974 38 H 0.098 0.902 39 H -0.009 1.009 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.028 0.972 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.295 3.729 15.951 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 H 0.113 0.887 4 C -0.181 4.181 5 C 0.000 4.000 6 H 0.120 0.880 7 C 0.303 3.697 8 O -0.404 6.404 9 N -0.338 5.338 10 C -0.018 4.018 11 C -0.081 4.081 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.549 4.549 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.089 4.089 23 C -0.002 4.002 24 O -0.236 6.236 25 C 0.033 3.967 26 H 0.143 0.857 27 C 0.304 3.696 28 O -0.380 6.380 29 O -0.327 6.327 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.045 0.955 38 H 0.117 0.883 39 H 0.009 0.991 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -18.139 2.676 15.780 24.191 hybrid contribution 1.003 1.498 0.167 1.811 sum -17.136 4.174 15.947 23.778 Atomic orbital electron populations 1.21755 0.91947 1.03031 1.03282 1.22677 0.98402 0.99885 0.91884 0.88692 1.23533 0.94622 1.01273 0.98649 1.22945 0.98675 0.96174 0.82182 0.88030 1.20113 0.78038 0.89706 0.81810 1.90704 1.52977 1.31403 1.65336 1.48137 1.65405 1.11529 1.08749 1.22269 0.99963 0.84517 0.95084 1.22431 0.93829 0.96053 0.95779 1.62089 1.41439 1.01769 1.20723 1.19732 0.84932 0.97394 0.91086 1.21122 0.98311 1.20505 1.14981 0.91793 1.25003 0.94960 0.96901 0.97720 1.69957 1.03710 1.42742 1.37204 0.86496 0.78407 0.81647 0.80851 1.20734 1.21243 1.19726 1.22418 0.94957 0.95941 0.95621 1.21785 0.96481 0.86690 0.95256 1.88675 1.47970 1.63487 1.23441 1.22363 0.89653 0.92272 0.92368 0.85749 1.23870 0.83988 0.79548 0.82192 1.90772 1.19738 1.64545 1.62912 1.84490 1.43337 1.53106 1.51789 0.91149 0.91215 0.91711 0.87669 0.88770 0.90127 0.90332 0.95541 0.88342 0.99070 0.94966 0.92821 0.95426 0.89902 0.89309 0.90689 0.72900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 9.16 37.16 0.34 -0.34 16 2 C -0.11 -0.74 3.10 -88.61 -0.27 -1.02 16 3 H 0.09 0.59 7.84 -51.93 -0.41 0.19 16 4 C -0.14 -1.13 5.28 -24.42 -0.13 -1.26 16 5 C 0.06 0.73 2.91 -26.86 -0.08 0.65 16 6 H 0.10 1.15 7.47 -51.93 -0.39 0.77 16 7 C 0.52 7.82 7.12 -10.98 -0.08 7.75 16 8 O -0.53 -9.98 16.00 -13.79 -0.22 -10.20 16 9 N -0.60 -8.69 3.00 -172.18 -0.52 -9.20 16 10 C 0.10 1.34 5.73 -3.36 -0.02 1.32 16 11 C 0.05 0.83 5.47 -3.46 -0.02 0.82 16 12 N -0.53 -10.72 4.62 -235.47 -1.09 -11.80 16 13 C 0.19 4.81 4.72 -4.98 -0.02 4.79 16 14 C -0.51 -13.58 8.41 -34.44 -0.29 -13.87 16 15 H 0.06 1.65 7.13 -52.49 -0.37 1.27 16 16 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 18 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 C 0.04 0.70 5.62 -3.71 -0.02 0.68 16 23 C 0.12 1.81 6.60 -3.61 -0.02 1.79 16 24 O -0.32 -4.40 9.81 -64.45 -0.63 -5.03 16 25 C 0.09 0.88 3.66 -27.15 -0.10 0.78 16 26 H 0.13 0.95 7.82 -51.93 -0.41 0.55 16 27 C 0.46 4.68 7.51 36.01 0.27 4.95 16 28 O -0.49 -7.09 17.28 -25.41 -0.44 -7.53 16 29 O -0.51 -3.25 13.42 -39.25 -0.53 -3.78 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 33 H 0.10 0.65 6.51 -51.93 -0.34 0.31 16 34 H 0.09 0.74 7.95 -51.93 -0.41 0.33 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.77 4.67 -51.93 -0.24 0.53 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 1.79 6.67 -51.93 -0.35 1.44 16 39 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 40 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 44 H 0.09 1.36 7.06 -51.92 -0.37 0.99 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.41 1.02 9.10 45.56 0.41 1.44 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -35.72 370.63 -8.88 -44.60 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.21 Total: -1.57 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -0.54 Total: 8.46 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.87 Total: -46.28 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -1.82 Total: -26.54 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.72 -8.88 -44.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599874996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.045 kcal (2) G-P(sol) polarization free energy of solvation -35.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds