Wall clock time and date at job start Fri Apr 10 2020 18:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 120.00080 * 2 1 4 4 N 1.34771 * 119.99875 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99989 * 179.97438 * 4 2 1 6 6 C 1.50698 * 109.47134 * 299.99778 * 5 4 2 7 7 O 1.20822 * 119.99804 * 215.00030 * 6 5 4 8 8 O 1.34231 * 120.00053 * 35.00015 * 6 5 4 9 9 C 1.45198 * 116.99983 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47036 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46835 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00280 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46828 * 90.00241 * 18 16 14 20 20 H 1.48495 * 109.46968 * 209.99597 * 18 16 14 21 21 H 1.48499 * 109.47437 * 330.00066 * 18 16 14 22 22 C 1.53006 * 109.47037 * 59.99806 * 5 4 2 23 23 C 1.53000 * 109.47414 * 60.00054 * 22 5 4 24 24 C 1.52998 * 109.47317 * 59.99808 * 23 22 5 25 25 C 1.53006 * 109.47035 * 300.00424 * 24 23 22 26 26 C 1.53001 * 109.47318 * 179.97438 * 5 4 2 27 27 H 1.09005 * 109.47172 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46914 * 299.99631 * 1 2 3 29 29 H 1.09002 * 109.47187 * 59.99765 * 1 2 3 30 30 H 0.97005 * 120.00442 * 359.97438 * 4 2 1 31 31 H 1.09002 * 109.47379 * 59.99613 * 9 8 6 32 32 H 1.09001 * 109.46782 * 299.99696 * 9 8 6 33 33 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 34 34 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 35 35 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 36 36 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.47314 * 179.97438 * 22 5 4 38 38 H 1.09007 * 109.46665 * 300.00107 * 22 5 4 39 39 H 1.09004 * 109.46872 * 300.00261 * 23 22 5 40 40 H 1.08994 * 109.47175 * 180.02562 * 23 22 5 41 41 H 1.08993 * 109.47033 * 180.02562 * 24 23 22 42 42 H 1.09003 * 109.46746 * 59.99610 * 24 23 22 43 43 H 1.08994 * 109.47314 * 299.99713 * 25 24 23 44 44 H 1.09000 * 109.46934 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.47010 * 59.99556 * 26 5 4 46 46 H 1.08994 * 109.47199 * 180.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1477 -0.4566 -1.2316 7 8 5.1570 -0.8344 -1.7779 8 8 3.4735 0.5961 -1.7207 9 6 4.0148 1.2313 -2.9088 10 6 3.1309 2.3845 -3.3088 11 8 2.1424 2.6455 -2.6564 12 7 3.4395 3.1263 -4.3909 13 6 2.5805 4.2476 -4.7794 14 6 3.1422 4.9069 -6.0127 15 1 4.0481 4.5282 -6.4623 16 6 2.4995 5.9935 -6.5669 17 7 1.3966 6.4550 -6.0191 18 14 3.1962 6.8112 -8.0952 19 1 2.6227 6.1689 -9.3052 20 1 2.8460 8.2542 -8.0878 21 1 4.6734 6.6603 -8.1076 22 6 4.1564 -0.4462 1.2481 23 6 3.6469 -1.1676 2.4975 24 6 4.1568 -2.6101 2.4971 25 6 3.6463 -3.3311 1.2478 26 6 4.1559 -2.6097 -0.0010 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.6959 -2.0073 -0.0005 31 1 4.0558 0.5064 -3.7218 32 1 5.0192 1.5988 -2.6987 33 1 4.2303 2.9177 -4.9124 34 1 1.5761 3.8801 -4.9898 35 1 2.5393 4.9724 -3.9663 36 1 0.9442 7.2193 -6.4092 37 1 5.2463 -0.4466 1.2480 38 1 3.7930 0.5816 1.2484 39 1 2.5568 -1.1676 2.4979 40 1 4.0102 -0.6537 3.3873 41 1 3.7934 -3.1241 3.3869 42 1 5.2468 -2.6101 2.4966 43 1 2.5564 -3.3311 1.2482 44 1 4.0100 -4.3587 1.2473 45 1 3.7922 -3.1237 -0.8906 46 1 5.2458 -2.6097 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145266857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:45 Heat of formation + Delta-G solvation = -168.157571 kcal Electronic energy + Delta-G solvation = -29039.216410 eV Core-core repulsion = 24928.666816 eV Total energy + Delta-G solvation = -4110.549594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37728 -39.53305 -38.53311 -37.89012 -36.12920 -34.12590 -33.95154 -32.33104 -31.33656 -31.12382 -29.06776 -28.68434 -26.65357 -24.24445 -23.16637 -22.49051 -21.25749 -20.91272 -19.79548 -19.30356 -17.95458 -17.52714 -16.89666 -16.57150 -16.34421 -15.85032 -15.45774 -15.21147 -15.00696 -14.61936 -14.43025 -14.25241 -14.12197 -13.78675 -13.38060 -13.06494 -12.94786 -12.77032 -12.65281 -12.49097 -12.41600 -12.21584 -12.02708 -11.91922 -11.64010 -11.52415 -11.13186 -10.98670 -10.97286 -10.88206 -10.66184 -10.51787 -10.33811 -10.30242 -9.53800 -9.38873 -9.17487 -8.97816 -8.72528 -7.87447 -6.15539 -4.22496 2.08070 2.50608 2.87968 3.08304 3.25279 3.31389 3.34140 3.35077 4.01076 4.14126 4.31575 4.35775 4.50174 4.69977 4.76073 4.86757 4.96632 5.02559 5.09052 5.17468 5.20423 5.24795 5.25602 5.33915 5.36582 5.48494 5.48694 5.55975 5.63398 5.69352 5.73881 5.82959 5.91228 5.99055 6.04045 6.26401 6.46918 7.30689 7.42673 7.43385 7.53147 7.65506 7.77987 7.97503 8.36720 8.60992 8.79075 9.09576 9.43863 10.94669 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.026350 B = 0.002602 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.361321 B =10758.257238 C =11374.828884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.502 3.498 3 O -0.480 6.480 4 N -0.729 5.729 5 C 0.199 3.801 6 C 0.455 3.545 7 O -0.515 6.515 8 O -0.290 6.290 9 C 0.041 3.959 10 C 0.498 3.502 11 O -0.519 6.519 12 N -0.711 5.711 13 C 0.253 3.747 14 C -0.543 4.543 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.131 4.131 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.113 4.113 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.401 0.599 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.391 0.609 34 H 0.027 0.973 35 H 0.028 0.972 36 H 0.266 0.734 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 -22.416 16.604 28.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.288 3.712 3 O -0.351 6.351 4 N -0.388 5.388 5 C 0.110 3.890 6 C 0.296 3.704 7 O -0.404 6.404 8 O -0.203 6.203 9 C -0.037 4.037 10 C 0.281 3.719 11 O -0.395 6.395 12 N -0.362 5.362 13 C 0.133 3.867 14 C -0.582 4.582 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.170 4.170 23 C -0.148 4.148 24 C -0.160 4.160 25 C -0.154 4.154 26 C -0.150 4.150 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.237 0.763 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.223 0.777 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.774 -21.304 16.861 27.311 hybrid contribution 0.662 -0.016 -1.420 1.567 sum 3.436 -21.320 15.441 26.548 Atomic orbital electron populations 1.21801 0.91679 1.03392 1.05670 1.20819 0.90606 0.83455 0.76302 1.90838 1.69575 1.30408 1.44304 1.46225 1.04656 1.09544 1.78329 1.20057 0.82186 0.95827 0.90908 1.24216 0.82213 0.78805 0.85162 1.90651 1.25195 1.65496 1.59047 1.86942 1.51131 1.41349 1.40863 1.22874 0.98155 0.95500 0.87186 1.19855 0.86445 0.83494 0.82129 1.90737 1.27096 1.69485 1.52158 1.46349 1.29612 1.32893 1.27391 1.19118 0.89824 0.82474 0.95280 1.21224 1.10949 1.14723 1.11278 0.91849 1.24953 0.94804 0.96588 0.97676 1.69975 1.17304 1.24904 1.40069 0.86403 0.79287 0.78594 0.82551 1.20462 1.20987 1.19739 1.21974 1.01208 1.01766 0.92010 1.21440 1.01253 0.95180 0.96949 1.21599 1.01087 0.95729 0.97611 1.21538 1.00909 0.99147 0.93811 1.21722 1.02983 0.91052 0.99284 0.91313 0.89032 0.88289 0.76329 0.89247 0.89030 0.77701 0.95462 0.95373 0.92429 0.90663 0.88462 0.91497 0.91384 0.91657 0.91665 0.91635 0.90982 0.90639 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.39 36.01 0.37 -1.20 16 2 C 0.50 6.36 6.87 -10.99 -0.08 6.29 16 3 O -0.48 -8.52 12.35 -18.95 -0.23 -8.75 16 4 N -0.73 -6.90 4.03 -48.68 -0.20 -7.10 16 5 C 0.20 2.13 0.63 -132.97 -0.08 2.04 16 6 C 0.45 6.78 6.71 36.00 0.24 7.02 16 7 O -0.52 -8.26 15.85 -18.75 -0.30 -8.55 16 8 O -0.29 -5.14 5.92 -49.96 -0.30 -5.43 16 9 C 0.04 0.70 5.94 36.01 0.21 0.92 16 10 C 0.50 10.77 7.91 -10.98 -0.09 10.68 16 11 O -0.52 -13.37 16.50 -14.11 -0.23 -13.60 16 12 N -0.71 -15.62 5.55 -61.47 -0.34 -15.96 16 13 C 0.25 6.87 5.43 -5.19 -0.03 6.84 16 14 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 15 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 18 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C -0.13 -1.37 4.50 -26.73 -0.12 -1.49 16 23 C -0.11 -0.83 5.77 -26.73 -0.15 -0.99 16 24 C -0.12 -0.71 5.92 -26.73 -0.16 -0.86 16 25 C -0.12 -0.62 5.75 -26.75 -0.15 -0.77 16 26 C -0.11 -0.88 4.31 -26.75 -0.12 -1.00 16 27 H 0.07 0.41 7.91 -51.93 -0.41 0.00 16 28 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.40 2.45 7.16 -40.82 -0.29 2.16 16 31 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 32 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 33 H 0.39 7.31 8.32 -40.82 -0.34 6.97 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 1.31 6.17 -51.92 -0.32 0.99 16 39 H 0.07 0.51 7.60 -51.93 -0.39 0.11 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.29 6.86 -51.93 -0.36 -0.07 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -36.52 374.70 -7.93 -44.45 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.13 Total: 4.99 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -0.56 Total: 13.86 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.20 Total: -48.70 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.06 Total: -36.34 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.52 -7.93 -44.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145266857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.707 kcal (2) G-P(sol) polarization free energy of solvation -36.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds