Wall clock time and date at job start Fri Apr 10 2020 18:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 120.00080 * 2 1 4 4 N 1.34771 * 119.99875 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99989 * 179.97438 * 4 2 1 6 6 C 1.50698 * 109.47134 * 299.99778 * 5 4 2 7 7 O 1.20822 * 119.99804 * 215.00030 * 6 5 4 8 8 O 1.34231 * 120.00053 * 35.00015 * 6 5 4 9 9 C 1.45198 * 116.99983 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47036 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46835 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00280 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46828 * 90.00241 * 18 16 14 20 20 H 1.48495 * 109.46968 * 209.99597 * 18 16 14 21 21 H 1.48499 * 109.47437 * 330.00066 * 18 16 14 22 22 C 1.53006 * 109.47037 * 59.99806 * 5 4 2 23 23 C 1.53000 * 109.47414 * 60.00054 * 22 5 4 24 24 C 1.52998 * 109.47317 * 59.99808 * 23 22 5 25 25 C 1.53006 * 109.47035 * 300.00424 * 24 23 22 26 26 C 1.53001 * 109.47318 * 179.97438 * 5 4 2 27 27 H 1.09005 * 109.47172 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46914 * 299.99631 * 1 2 3 29 29 H 1.09002 * 109.47187 * 59.99765 * 1 2 3 30 30 H 0.97005 * 120.00442 * 359.97438 * 4 2 1 31 31 H 1.09002 * 109.47379 * 59.99613 * 9 8 6 32 32 H 1.09001 * 109.46782 * 299.99696 * 9 8 6 33 33 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 34 34 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 35 35 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 36 36 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.47314 * 179.97438 * 22 5 4 38 38 H 1.09007 * 109.46665 * 300.00107 * 22 5 4 39 39 H 1.09004 * 109.46872 * 300.00261 * 23 22 5 40 40 H 1.08994 * 109.47175 * 180.02562 * 23 22 5 41 41 H 1.08993 * 109.47033 * 180.02562 * 24 23 22 42 42 H 1.09003 * 109.46746 * 59.99610 * 24 23 22 43 43 H 1.08994 * 109.47314 * 299.99713 * 25 24 23 44 44 H 1.09000 * 109.46934 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.47010 * 59.99556 * 26 5 4 46 46 H 1.08994 * 109.47199 * 180.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1477 -0.4566 -1.2316 7 8 5.1570 -0.8344 -1.7779 8 8 3.4735 0.5961 -1.7207 9 6 4.0148 1.2313 -2.9088 10 6 3.1309 2.3845 -3.3088 11 8 2.1424 2.6455 -2.6564 12 7 3.4395 3.1263 -4.3909 13 6 2.5805 4.2476 -4.7794 14 6 3.1422 4.9069 -6.0127 15 1 4.0481 4.5282 -6.4623 16 6 2.4995 5.9935 -6.5669 17 7 1.3966 6.4550 -6.0191 18 14 3.1962 6.8112 -8.0952 19 1 2.6227 6.1689 -9.3052 20 1 2.8460 8.2542 -8.0878 21 1 4.6734 6.6603 -8.1076 22 6 4.1564 -0.4462 1.2481 23 6 3.6469 -1.1676 2.4975 24 6 4.1568 -2.6101 2.4971 25 6 3.6463 -3.3311 1.2478 26 6 4.1559 -2.6097 -0.0010 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.6959 -2.0073 -0.0005 31 1 4.0558 0.5064 -3.7218 32 1 5.0192 1.5988 -2.6987 33 1 4.2303 2.9177 -4.9124 34 1 1.5761 3.8801 -4.9898 35 1 2.5393 4.9724 -3.9663 36 1 0.9442 7.2193 -6.4092 37 1 5.2463 -0.4466 1.2480 38 1 3.7930 0.5816 1.2484 39 1 2.5568 -1.1676 2.4979 40 1 4.0102 -0.6537 3.3873 41 1 3.7934 -3.1241 3.3869 42 1 5.2468 -2.6101 2.4966 43 1 2.5564 -3.3311 1.2482 44 1 4.0100 -4.3587 1.2473 45 1 3.7922 -3.1237 -0.8906 46 1 5.2458 -2.6097 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145266857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:45 Heat of formation + Delta-G solvation = -193.725353 kcal Electronic energy + Delta-G solvation = -29040.325112 eV Core-core repulsion = 24928.666816 eV Total energy + Delta-G solvation = -4111.658296 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.40812 -40.82422 -40.11435 -38.82980 -37.41347 -36.16304 -34.80592 -34.41625 -32.11846 -31.83232 -30.74482 -29.48020 -28.53632 -25.33519 -24.40897 -23.79543 -22.24010 -21.74191 -21.61746 -20.17942 -19.28003 -18.97453 -18.16268 -17.80901 -17.65337 -17.21215 -16.94996 -16.76062 -16.11126 -16.01460 -15.97701 -15.25088 -14.91664 -14.84594 -14.65155 -14.52146 -14.12884 -13.95617 -13.69688 -13.69148 -13.48780 -13.34999 -13.22582 -13.03738 -12.96174 -12.86543 -12.72807 -12.24935 -12.18725 -12.00690 -11.86386 -11.52107 -11.49976 -11.26619 -11.22667 -10.83382 -10.83144 -10.56342 -10.11487 -9.91918 -8.31328 -6.48424 0.93223 1.28031 1.42359 1.44527 1.56057 1.58579 1.86848 2.22779 2.32610 2.55649 3.03407 3.34852 3.56991 3.62576 3.74794 3.94106 3.99783 4.00782 4.11585 4.18762 4.21991 4.41016 4.45614 4.54358 4.63356 4.69964 4.75728 4.98548 5.04972 5.05851 5.12050 5.17238 5.18412 5.19559 5.22582 5.31968 5.36035 5.41497 5.43553 5.52326 5.62635 5.80123 6.53282 6.60770 6.64759 6.79796 7.19229 7.36739 7.45732 8.81022 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.026350 B = 0.002602 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.361321 B =10758.257238 C =11374.828884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.495 3.505 3 O -0.537 6.537 4 N -0.710 5.710 5 C 0.200 3.800 6 C 0.448 3.552 7 O -0.528 6.528 8 O -0.311 6.311 9 C 0.050 3.950 10 C 0.497 3.503 11 O -0.565 6.565 12 N -0.703 5.703 13 C 0.270 3.730 14 C -0.558 4.558 15 H 0.085 0.915 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.987 3.013 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.256 1.256 22 C -0.129 4.129 23 C -0.105 4.105 24 C -0.120 4.120 25 C -0.111 4.111 26 C -0.107 4.107 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.421 0.579 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.409 0.591 34 H -0.009 1.009 35 H -0.012 1.012 36 H 0.270 0.730 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.064 -25.112 16.407 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.283 3.717 3 O -0.413 6.413 4 N -0.369 5.369 5 C 0.111 3.889 6 C 0.290 3.710 7 O -0.418 6.418 8 O -0.225 6.225 9 C -0.028 4.028 10 C 0.282 3.718 11 O -0.444 6.444 12 N -0.355 5.355 13 C 0.148 3.852 14 C -0.595 4.595 15 H 0.103 0.897 16 C -0.196 4.196 17 N -0.569 5.569 18 Si 0.810 3.190 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.180 1.180 22 C -0.168 4.168 23 C -0.143 4.143 24 C -0.157 4.157 25 C -0.148 4.148 26 C -0.145 4.145 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.260 0.740 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.245 0.755 34 H 0.009 0.991 35 H 0.006 0.994 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.924 -24.091 16.666 29.556 hybrid contribution 0.308 0.796 -1.286 1.543 sum 4.232 -23.296 15.380 28.233 Atomic orbital electron populations 1.21796 0.89417 1.05994 1.04842 1.21412 0.91846 0.83321 0.75123 1.90826 1.70870 1.32596 1.46967 1.46043 1.04303 1.09684 1.76828 1.20269 0.82715 0.97135 0.88793 1.25169 0.81985 0.77964 0.85856 1.90628 1.25718 1.65719 1.59684 1.86986 1.52105 1.42495 1.40883 1.22716 0.97204 0.94349 0.88499 1.20611 0.86186 0.83984 0.80986 1.90717 1.29358 1.70856 1.53454 1.46048 1.29634 1.31793 1.28021 1.18576 0.89282 0.83017 0.94323 1.21600 1.11700 1.15035 1.11200 0.89740 1.26083 0.94912 0.97195 1.01391 1.70138 1.19001 1.25605 1.42116 0.85128 0.79171 0.77055 0.77682 1.19418 1.20866 1.18024 1.21932 1.01081 1.00270 0.93483 1.21427 1.01264 0.96355 0.95233 1.21597 1.01131 0.94242 0.98722 1.21566 1.01824 0.99575 0.91852 1.21769 1.02611 0.88936 1.01172 0.86995 0.88225 0.90684 0.73988 0.86542 0.87188 0.75467 0.99068 0.99429 0.92152 0.90825 0.92047 0.91354 0.91186 0.89805 0.91703 0.90133 0.88950 0.90000 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 10.39 71.24 0.74 -2.24 16 2 C 0.50 12.67 6.87 87.66 0.60 13.27 16 3 O -0.54 -20.13 12.35 20.40 0.25 -19.87 16 4 N -0.71 -12.53 4.03 -426.32 -1.72 -14.25 16 5 C 0.20 4.10 0.63 2.86 0.00 4.10 16 6 C 0.45 13.26 6.71 71.24 0.48 13.74 16 7 O -0.53 -16.51 15.85 21.98 0.35 -16.16 16 8 O -0.31 -11.24 5.92 -41.19 -0.24 -11.48 16 9 C 0.05 1.71 5.94 71.24 0.42 2.14 16 10 C 0.50 22.21 7.91 87.66 0.69 22.91 16 11 O -0.57 -30.82 16.50 15.77 0.26 -30.56 16 12 N -0.70 -31.60 5.55 -466.78 -2.59 -34.19 16 13 C 0.27 15.37 5.43 85.63 0.46 15.83 16 14 C -0.56 -31.03 9.28 25.60 0.24 -30.79 16 15 H 0.08 4.24 7.60 -2.91 -0.02 4.22 16 16 C 0.00 0.22 5.46 84.66 0.46 0.68 16 17 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 18 Si 0.99 42.99 29.54 68.60 2.03 45.02 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 C -0.13 -2.70 4.50 30.60 0.14 -2.56 16 23 C -0.11 -1.43 5.77 30.59 0.18 -1.25 16 24 C -0.12 -1.01 5.92 30.60 0.18 -0.83 16 25 C -0.11 -0.77 5.75 30.58 0.18 -0.59 16 26 C -0.11 -1.43 4.31 30.58 0.13 -1.29 16 27 H 0.11 1.03 7.91 -2.38 -0.02 1.01 16 28 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.42 3.96 7.16 -92.70 -0.66 3.29 16 31 H 0.12 3.37 8.13 -2.39 -0.02 3.35 16 32 H 0.11 3.38 8.13 -2.39 -0.02 3.36 16 33 H 0.41 15.15 8.32 -92.71 -0.77 14.38 16 34 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.76 6.17 -2.38 -0.01 1.75 16 39 H 0.07 0.91 7.60 -2.38 -0.02 0.89 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.08 0.35 6.86 -2.39 -0.02 0.33 16 44 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.09 1.30 7.87 -2.39 -0.02 1.28 16 Total: -1.00 -84.70 374.70 3.10 -81.60 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.43 Total: 23.51 kcal Atomic # 6 Polarization: 28.19 SS G_CDS: 4.91 Total: 33.09 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -4.02 Total: -105.15 kcal Atomic # 8 Polarization: -78.69 SS G_CDS: 0.62 Total: -78.08 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -84.70 3.10 -81.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145266857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.124 kcal (2) G-P(sol) polarization free energy of solvation -84.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds