Wall clock time and date at job start Fri Apr 10 2020 18:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00401 * 2 1 4 4 C 1.53000 * 109.47183 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.46914 * 65.00352 * 4 3 2 6 6 C 1.42899 * 114.00288 * 179.97438 * 5 4 3 7 7 C 1.52990 * 109.47587 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47304 * 64.99697 * 7 6 5 9 9 C 1.34777 * 120.00195 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99953 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99726 * 180.27548 * 9 8 7 12 12 C 1.40196 * 119.99786 * 179.72659 * 11 9 8 13 13 C 1.40403 * 125.97362 * 359.72037 * 12 11 9 14 14 C 1.35241 * 107.87032 * 179.83093 * 13 12 11 15 15 C 1.50704 * 126.07402 * 180.16205 * 14 13 12 16 16 N 1.34964 * 107.85500 * 0.42559 * 14 13 12 17 17 C 1.46503 * 125.97580 * 179.71183 * 16 14 13 18 18 C 1.50699 * 109.47232 * 270.00070 * 17 16 14 19 19 H 1.08004 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00303 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99755 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99889 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47357 * 90.00225 * 22 20 18 24 24 H 1.48502 * 109.46910 * 210.00009 * 22 20 18 25 25 H 1.48502 * 109.47436 * 330.00267 * 22 20 18 26 26 N 1.31207 * 125.97268 * 180.02562 * 12 11 9 27 27 H 1.09007 * 109.47139 * 300.00470 * 1 2 3 28 28 H 1.09003 * 109.46849 * 59.99933 * 1 2 3 29 29 H 1.08999 * 109.47484 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47319 * 59.99897 * 3 2 1 31 31 H 1.08992 * 109.47183 * 299.99710 * 3 2 1 32 32 H 1.08999 * 109.47856 * 305.00145 * 4 3 2 33 33 H 1.09003 * 109.47324 * 184.99660 * 4 3 2 34 34 H 1.08997 * 109.47000 * 59.99281 * 6 5 4 35 35 H 1.08999 * 109.47126 * 300.00310 * 6 5 4 36 36 H 1.08998 * 109.47186 * 304.99947 * 7 6 5 37 37 H 1.09002 * 109.47663 * 185.00230 * 7 6 5 38 38 H 0.97000 * 120.00069 * 0.02562 * 8 7 6 39 39 H 0.97000 * 120.00483 * 359.73178 * 11 9 8 40 40 H 1.08001 * 126.06561 * 359.97438 * 13 12 11 41 41 H 1.09000 * 109.46414 * 270.31468 * 15 14 13 42 42 H 1.08994 * 109.47042 * 30.31368 * 15 14 13 43 43 H 1.08993 * 109.47184 * 150.31712 * 15 14 13 44 44 H 1.09001 * 109.47222 * 29.99739 * 17 16 14 45 45 H 1.08997 * 109.47398 * 150.00005 * 17 16 14 46 46 H 0.97000 * 119.99662 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 8 3.9658 0.5791 -1.2202 6 6 5.3821 0.4195 -1.3222 7 6 5.7265 -0.2353 -2.6614 8 7 5.3584 0.6672 -3.7551 9 6 5.5720 0.2985 -5.0338 10 8 6.0697 -0.7833 -5.2796 11 7 5.2384 1.1311 -6.0398 12 6 5.4658 0.7500 -7.3697 13 6 6.0357 -0.4607 -7.7947 14 6 6.0794 -0.4469 -9.1463 15 6 6.6118 -1.5469 -10.0283 16 7 5.5670 0.7294 -9.5649 17 6 5.4310 1.1619 -10.9581 18 6 6.6788 1.8934 -11.3811 19 1 7.4920 2.0229 -10.6822 20 6 6.7827 2.3965 -12.6606 21 7 5.7931 2.2375 -13.5120 22 14 8.3291 3.3039 -13.1846 23 1 9.3021 2.3366 -13.7527 24 1 7.9832 4.3191 -14.2118 25 1 8.9313 3.9774 -12.0061 26 7 5.1884 1.4647 -8.4344 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 3.8509 0.5683 0.8426 33 1 3.9786 2.1764 0.0902 34 1 5.7361 -0.2123 -0.5076 35 1 5.8632 1.3956 -1.2602 36 1 5.1755 -1.1704 -2.7609 37 1 6.7967 -0.4381 -2.7022 38 1 4.9617 1.5303 -3.5591 39 1 4.8411 1.9940 -5.8438 40 1 6.3764 -1.2620 -7.1557 41 1 7.6764 -1.3903 -10.2017 42 1 6.4609 -2.5094 -9.5396 43 1 6.0831 -1.5364 -10.9813 44 1 5.2867 0.2903 -11.5966 45 1 4.5716 1.8260 -11.0501 46 1 5.8660 2.5918 -14.4121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272034654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:49 Heat of formation + Delta-G solvation = -40.255152 kcal Electronic energy + Delta-G solvation = -26787.397330 eV Core-core repulsion = 22714.686752 eV Total energy + Delta-G solvation = -4072.710577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.68550 -39.61239 -38.83852 -37.66949 -35.10777 -34.51992 -33.31775 -31.53884 -31.05108 -30.64529 -28.92673 -26.65284 -26.50746 -26.24155 -23.51745 -23.00570 -22.67940 -21.40615 -19.83934 -19.52398 -17.75651 -17.52152 -17.20642 -16.65264 -16.51584 -15.90500 -15.79842 -15.75627 -15.32782 -15.23579 -14.60899 -14.38123 -14.22726 -14.06576 -13.73298 -13.33243 -12.93810 -12.72483 -12.50745 -12.43335 -12.21772 -12.09547 -11.99482 -11.66142 -11.60844 -11.43373 -11.34727 -11.05473 -10.79792 -10.38982 -10.21207 -10.13086 -10.07341 -9.93135 -9.59106 -9.48710 -9.13932 -8.61045 -7.84205 -7.33174 -6.21923 -4.29231 2.46854 2.72754 3.14037 3.20062 3.23438 3.29664 3.34361 3.35412 3.68360 3.92105 4.30293 4.40951 4.46015 4.62756 4.70503 4.78486 4.87245 4.92045 4.97762 4.99372 5.04098 5.11620 5.25323 5.31750 5.42972 5.48356 5.64950 5.77964 5.98966 6.17505 6.28471 6.33678 6.52478 6.65273 6.68431 6.69502 6.79000 7.00886 7.10926 7.21816 7.60285 7.71202 7.93390 8.03699 8.13493 8.68682 8.73559 8.81260 9.36749 10.85194 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020110 B = 0.001927 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.001573 B =14530.487379 C =14702.042146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.376 6.376 6 C 0.049 3.951 7 C 0.144 3.856 8 N -0.740 5.740 9 C 0.713 3.287 10 O -0.568 6.568 11 N -0.644 5.644 12 C 0.283 3.717 13 C -0.289 4.289 14 C 0.090 3.910 15 C -0.083 4.083 16 N -0.319 5.319 17 C 0.259 3.741 18 C -0.534 4.534 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.273 1.273 26 N -0.325 5.325 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.398 0.602 39 H 0.406 0.594 40 H 0.160 0.840 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.453 -2.591 27.592 28.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.015 4.015 4 C -0.013 4.013 5 O -0.296 6.296 6 C -0.028 4.028 7 C 0.020 3.980 8 N -0.397 5.397 9 C 0.412 3.588 10 O -0.444 6.444 11 N -0.294 5.294 12 C 0.030 3.970 13 C -0.320 4.320 14 C -0.041 4.041 15 C -0.141 4.141 16 N -0.101 5.101 17 C 0.141 3.859 18 C -0.572 4.572 19 H 0.082 0.918 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.197 1.197 26 N -0.156 5.156 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.232 0.768 39 H 0.240 0.760 40 H 0.178 0.822 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.566 -2.651 26.506 27.213 hybrid contribution 0.603 1.197 0.370 1.390 sum -4.963 -1.454 26.876 27.369 Atomic orbital electron populations 1.22758 0.80906 1.02998 0.99911 1.87960 1.19727 1.27181 1.95377 1.22562 0.92332 0.85665 1.00962 1.22526 0.93487 0.97538 0.87790 1.88029 1.21570 1.82087 1.37865 1.22807 0.82230 1.00295 0.97455 1.21209 1.00792 0.93350 0.82659 1.44907 1.68797 1.22116 1.03870 1.15615 0.79265 0.83743 0.80161 1.90870 1.48963 1.21924 1.82601 1.41385 1.65271 1.20678 1.02068 1.18663 1.00775 0.94115 0.83459 1.21238 1.16690 1.01189 0.92890 1.21054 0.98876 0.89947 0.94259 1.20323 1.01459 0.94233 0.98132 1.48942 1.44220 1.10473 1.06514 1.19663 0.99143 0.96969 0.70107 1.21334 1.01538 1.36653 0.97718 0.91770 1.24929 0.97099 0.95819 0.96012 1.69922 1.31448 1.45563 1.06107 0.86358 0.82466 0.79466 0.78401 1.20318 1.20919 1.19735 1.77242 1.28008 1.19400 0.90918 0.94218 0.93871 0.89489 0.91869 0.92248 0.92341 0.91684 0.91353 0.92496 0.90423 0.89823 0.76768 0.75987 0.82228 0.90491 0.90841 0.90927 0.92831 0.93067 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.55 10.67 -40.08 -0.43 -3.98 16 3 C 0.06 0.40 6.32 37.16 0.23 0.64 16 4 C 0.06 0.39 6.32 37.16 0.23 0.62 16 5 O -0.38 -3.27 10.25 -40.08 -0.41 -3.69 16 6 C 0.05 0.32 6.07 37.15 0.23 0.55 16 7 C 0.14 1.34 6.06 -4.05 -0.02 1.31 16 8 N -0.74 -8.09 5.51 -65.23 -0.36 -8.45 16 9 C 0.71 11.18 8.53 -86.92 -0.74 10.44 16 10 O -0.57 -10.84 13.47 5.28 0.07 -10.77 16 11 N -0.64 -10.61 5.46 -15.51 -0.08 -10.70 16 12 C 0.28 6.02 8.11 -154.36 -1.25 4.77 16 13 C -0.29 -6.22 9.52 -39.83 -0.38 -6.60 16 14 C 0.09 1.96 6.93 -82.28 -0.57 1.39 16 15 C -0.08 -1.47 10.11 36.01 0.36 -1.11 16 16 N -0.32 -7.78 3.59 -58.32 -0.21 -7.99 16 17 C 0.26 6.77 5.99 -5.19 -0.03 6.74 16 18 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 19 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 22 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 N -0.33 -7.73 12.59 31.44 0.40 -7.34 16 27 H 0.04 0.18 8.14 -51.92 -0.42 -0.24 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.40 3.38 8.49 -40.82 -0.35 3.03 16 39 H 0.41 5.38 8.84 -40.82 -0.36 5.02 16 40 H 0.16 3.39 5.91 -52.49 -0.31 3.08 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.29 7.07 -51.93 -0.37 0.92 16 44 H 0.05 1.38 7.04 -51.93 -0.37 1.02 16 45 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -35.50 392.94 -7.85 -43.35 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.21 Total: 5.42 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -1.25 Total: 6.49 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.48 Total: -59.07 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.77 Total: -18.43 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.50 -7.85 -43.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272034654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.093 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds