Wall clock time and date at job start Fri Apr 10 2020 18:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00401 * 2 1 4 4 C 1.53000 * 109.47183 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.46914 * 65.00352 * 4 3 2 6 6 C 1.42899 * 114.00288 * 179.97438 * 5 4 3 7 7 C 1.52990 * 109.47587 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47304 * 64.99697 * 7 6 5 9 9 C 1.34777 * 120.00195 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99953 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99726 * 180.27548 * 9 8 7 12 12 C 1.40196 * 119.99786 * 179.72659 * 11 9 8 13 13 C 1.40403 * 125.97362 * 359.72037 * 12 11 9 14 14 C 1.35241 * 107.87032 * 179.83093 * 13 12 11 15 15 C 1.50704 * 126.07402 * 180.16205 * 14 13 12 16 16 N 1.34964 * 107.85500 * 0.42559 * 14 13 12 17 17 C 1.46503 * 125.97580 * 179.71183 * 16 14 13 18 18 C 1.50699 * 109.47232 * 270.00070 * 17 16 14 19 19 H 1.08004 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00303 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99755 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99889 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47357 * 90.00225 * 22 20 18 24 24 H 1.48502 * 109.46910 * 210.00009 * 22 20 18 25 25 H 1.48502 * 109.47436 * 330.00267 * 22 20 18 26 26 N 1.31207 * 125.97268 * 180.02562 * 12 11 9 27 27 H 1.09007 * 109.47139 * 300.00470 * 1 2 3 28 28 H 1.09003 * 109.46849 * 59.99933 * 1 2 3 29 29 H 1.08999 * 109.47484 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47319 * 59.99897 * 3 2 1 31 31 H 1.08992 * 109.47183 * 299.99710 * 3 2 1 32 32 H 1.08999 * 109.47856 * 305.00145 * 4 3 2 33 33 H 1.09003 * 109.47324 * 184.99660 * 4 3 2 34 34 H 1.08997 * 109.47000 * 59.99281 * 6 5 4 35 35 H 1.08999 * 109.47126 * 300.00310 * 6 5 4 36 36 H 1.08998 * 109.47186 * 304.99947 * 7 6 5 37 37 H 1.09002 * 109.47663 * 185.00230 * 7 6 5 38 38 H 0.97000 * 120.00069 * 0.02562 * 8 7 6 39 39 H 0.97000 * 120.00483 * 359.73178 * 11 9 8 40 40 H 1.08001 * 126.06561 * 359.97438 * 13 12 11 41 41 H 1.09000 * 109.46414 * 270.31468 * 15 14 13 42 42 H 1.08994 * 109.47042 * 30.31368 * 15 14 13 43 43 H 1.08993 * 109.47184 * 150.31712 * 15 14 13 44 44 H 1.09001 * 109.47222 * 29.99739 * 17 16 14 45 45 H 1.08997 * 109.47398 * 150.00005 * 17 16 14 46 46 H 0.97000 * 119.99662 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 8 3.9658 0.5791 -1.2202 6 6 5.3821 0.4195 -1.3222 7 6 5.7265 -0.2353 -2.6614 8 7 5.3584 0.6672 -3.7551 9 6 5.5720 0.2985 -5.0338 10 8 6.0697 -0.7833 -5.2796 11 7 5.2384 1.1311 -6.0398 12 6 5.4658 0.7500 -7.3697 13 6 6.0357 -0.4607 -7.7947 14 6 6.0794 -0.4469 -9.1463 15 6 6.6118 -1.5469 -10.0283 16 7 5.5670 0.7294 -9.5649 17 6 5.4310 1.1619 -10.9581 18 6 6.6788 1.8934 -11.3811 19 1 7.4920 2.0229 -10.6822 20 6 6.7827 2.3965 -12.6606 21 7 5.7931 2.2375 -13.5120 22 14 8.3291 3.3039 -13.1846 23 1 9.3021 2.3366 -13.7527 24 1 7.9832 4.3191 -14.2118 25 1 8.9313 3.9774 -12.0061 26 7 5.1884 1.4647 -8.4344 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 3.8509 0.5683 0.8426 33 1 3.9786 2.1764 0.0902 34 1 5.7361 -0.2123 -0.5076 35 1 5.8632 1.3956 -1.2602 36 1 5.1755 -1.1704 -2.7609 37 1 6.7967 -0.4381 -2.7022 38 1 4.9617 1.5303 -3.5591 39 1 4.8411 1.9940 -5.8438 40 1 6.3764 -1.2620 -7.1557 41 1 7.6764 -1.3903 -10.2017 42 1 6.4609 -2.5094 -9.5396 43 1 6.0831 -1.5364 -10.9813 44 1 5.2867 0.2903 -11.5966 45 1 4.5716 1.8260 -11.0501 46 1 5.8660 2.5918 -14.4121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272034654.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:39:48 Heat of formation + Delta-G solvation = -66.543658 kcal Electronic energy + Delta-G solvation = -26788.537285 eV Core-core repulsion = 22714.686752 eV Total energy + Delta-G solvation = -4073.850533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.28923 -40.93171 -39.43006 -38.27235 -36.43557 -35.74572 -35.27186 -33.06252 -32.61228 -31.59660 -29.73583 -28.41300 -27.84301 -27.11546 -25.12736 -23.90277 -23.46913 -22.61309 -21.34339 -21.09854 -19.11383 -18.75658 -18.09989 -17.81938 -17.66339 -17.23549 -16.80123 -16.57087 -16.35638 -16.25681 -16.09279 -15.78128 -15.56480 -15.29124 -14.64032 -14.52002 -14.32812 -14.05091 -13.78396 -13.67364 -13.49843 -13.25882 -13.10529 -12.98751 -12.83064 -12.64835 -12.50552 -12.25211 -12.19288 -12.09782 -11.92311 -11.56439 -11.34327 -11.14113 -10.72004 -10.64361 -10.54758 -10.18865 -9.54409 -9.05656 -8.31173 -6.48956 1.03642 1.14845 1.38689 1.39362 1.51115 1.68534 2.10979 2.36508 2.40972 2.67606 2.89140 2.98031 3.18023 3.87250 3.92152 4.16366 4.18601 4.24266 4.27160 4.44449 4.46588 4.47747 4.53012 4.56430 4.61055 4.73747 4.74051 4.78466 4.84083 4.86667 4.90825 4.91317 5.00594 5.03532 5.16108 5.23211 5.48086 5.55302 5.82624 5.88304 5.99241 6.18016 6.29017 6.32017 6.63020 6.76945 7.14862 7.21780 7.44724 8.74498 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020110 B = 0.001927 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.001573 B =14530.487379 C =14702.042146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.054 3.946 4 C 0.060 3.940 5 O -0.405 6.405 6 C 0.056 3.944 7 C 0.140 3.860 8 N -0.717 5.717 9 C 0.710 3.290 10 O -0.603 6.603 11 N -0.636 5.636 12 C 0.292 3.708 13 C -0.299 4.299 14 C 0.087 3.913 15 C -0.081 4.081 16 N -0.343 5.343 17 C 0.275 3.725 18 C -0.552 4.552 19 H 0.049 0.951 20 C 0.022 3.978 21 N -0.918 5.918 22 Si 0.972 3.028 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.276 1.276 26 N -0.361 5.361 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.413 0.587 39 H 0.420 0.580 40 H 0.166 0.834 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.024 0.976 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 -2.093 29.240 29.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.022 4.022 4 C -0.017 4.017 5 O -0.325 6.325 6 C -0.021 4.021 7 C 0.017 3.983 8 N -0.374 5.374 9 C 0.409 3.591 10 O -0.481 6.481 11 N -0.288 5.288 12 C 0.037 3.963 13 C -0.330 4.330 14 C -0.043 4.043 15 C -0.139 4.139 16 N -0.126 5.126 17 C 0.156 3.844 18 C -0.590 4.590 19 H 0.067 0.933 20 C -0.179 4.179 21 N -0.556 5.556 22 Si 0.796 3.204 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.201 1.201 26 N -0.191 5.191 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.250 0.750 39 H 0.258 0.742 40 H 0.183 0.817 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.606 -2.130 28.220 28.672 hybrid contribution 0.234 1.009 0.012 1.036 sum -4.371 -1.121 28.232 28.590 Atomic orbital electron populations 1.22876 0.79890 1.03502 1.00727 1.87910 1.21104 1.28942 1.95587 1.22774 0.92730 0.84858 1.01822 1.22712 0.93244 0.98797 0.86899 1.87985 1.22583 1.82709 1.39257 1.22811 0.81721 1.01593 0.95940 1.21387 1.00932 0.92656 0.83372 1.44837 1.67351 1.22865 1.02390 1.15818 0.78990 0.83138 0.81133 1.90836 1.50557 1.23377 1.83307 1.41385 1.65305 1.21603 1.00537 1.18954 0.98964 0.93622 0.84731 1.21404 1.17114 1.01567 0.92879 1.21737 0.97692 0.89785 0.95122 1.20463 1.01488 0.94369 0.97598 1.48757 1.46186 1.11637 1.06020 1.19245 0.97515 0.96124 0.71496 1.21436 1.01774 1.37777 0.98023 0.93256 1.25742 1.00184 0.96234 0.95756 1.70005 1.33089 1.45986 1.06559 0.85343 0.78719 0.78464 0.77875 1.18938 1.19895 1.20101 1.77163 1.29911 1.20610 0.91454 0.92478 0.93935 0.89268 0.89538 0.92782 0.91954 0.89106 0.89531 0.90237 0.92309 0.89195 0.75026 0.74230 0.81698 0.89762 0.87653 0.91252 0.92996 0.95781 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -7.39 10.67 -144.34 -1.54 -8.93 16 3 C 0.05 0.63 6.32 71.98 0.45 1.09 16 4 C 0.06 0.60 6.32 71.98 0.45 1.05 16 5 O -0.41 -6.29 10.25 -144.34 -1.48 -7.77 16 6 C 0.06 0.59 6.07 71.98 0.44 1.03 16 7 C 0.14 2.39 6.06 86.38 0.52 2.91 16 8 N -0.72 -14.58 5.51 -478.55 -2.64 -17.21 16 9 C 0.71 21.65 8.53 179.05 1.53 23.18 16 10 O -0.60 -22.73 13.47 -4.01 -0.05 -22.79 16 11 N -0.64 -20.60 5.46 -321.23 -1.75 -22.35 16 12 C 0.29 12.48 8.11 133.31 1.08 13.56 16 13 C -0.30 -12.86 9.52 22.11 0.21 -12.65 16 14 C 0.09 3.81 6.93 41.39 0.29 4.10 16 15 C -0.08 -2.82 10.11 71.24 0.72 -2.09 16 16 N -0.34 -17.15 3.59 -338.44 -1.22 -18.36 16 17 C 0.28 14.86 5.99 85.63 0.51 15.37 16 18 C -0.55 -31.42 9.39 25.60 0.24 -31.18 16 19 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 20 C 0.02 1.20 5.46 84.66 0.46 1.66 16 21 N -0.92 -52.35 13.29 21.45 0.28 -52.07 16 22 Si 0.97 43.49 29.54 68.60 2.03 45.51 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 N -0.36 -17.51 12.59 -54.43 -0.69 -18.20 16 27 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.41 6.11 8.49 -92.71 -0.79 5.33 16 39 H 0.42 10.79 8.84 -92.71 -0.82 9.97 16 40 H 0.17 6.95 5.91 -2.91 -0.02 6.93 16 41 H 0.08 2.80 8.14 -2.39 -0.02 2.79 16 42 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.07 2.44 7.07 -2.39 -0.02 2.42 16 44 H 0.05 2.77 7.04 -2.39 -0.02 2.75 16 45 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -77.51 392.94 0.51 -77.01 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.60 Total: 25.57 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 8.16 Total: 19.60 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -6.00 Total: -128.19 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -3.07 Total: -39.49 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -77.51 0.51 -77.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272034654.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.461 kcal (2) G-P(sol) polarization free energy of solvation -77.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds