Wall clock time and date at job start Fri Apr 10 2020 18:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00262 * 2 1 4 4 H 1.48501 * 109.46960 * 274.70268 * 3 2 1 5 5 H 1.48496 * 109.47022 * 34.70430 * 3 2 1 6 6 H 1.48498 * 109.47349 * 154.70495 * 3 2 1 7 7 C 1.37878 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99606 * 355.58196 * 7 2 1 9 9 C 1.50695 * 120.00438 * 175.57642 * 7 2 1 10 10 O 1.42905 * 110.64405 * 62.07304 * 9 7 2 11 11 C 1.54603 * 110.72652 * 185.21986 * 9 7 2 12 12 C 1.53989 * 105.13651 * 140.31664 * 11 9 7 13 13 N 1.47905 * 107.06264 * 1.22869 * 12 11 9 14 14 C 1.46901 * 110.99855 * 214.15566 * 13 12 11 15 15 C 1.50701 * 109.46991 * 177.37404 * 14 13 12 16 16 O 1.21278 * 119.99919 * 356.20782 * 15 14 13 17 17 N 1.34775 * 120.00083 * 176.21131 * 15 14 13 18 18 C 1.46924 * 120.63156 * 180.02562 * 17 15 14 19 19 C 1.53199 * 108.77176 * 233.58497 * 18 17 15 20 20 C 1.53035 * 109.31109 * 305.36112 * 19 18 17 21 21 C 1.50705 * 109.45867 * 181.38831 * 20 19 18 22 22 O 1.20820 * 119.99779 * 359.97313 * 21 20 19 23 23 O 1.34231 * 119.99897 * 179.97438 * 21 20 19 24 24 C 1.53041 * 109.52679 * 61.37370 * 20 19 18 25 25 C 1.46931 * 120.63133 * 359.97358 * 17 15 14 26 26 C 1.48531 * 105.81745 * 334.66695 * 13 12 11 27 27 H 0.96996 * 120.00018 * 359.97438 * 1 2 3 28 28 H 0.96695 * 113.99913 * 61.69142 * 10 9 7 29 29 H 1.08995 * 110.30763 * 21.40130 * 11 9 7 30 30 H 1.08997 * 110.39015 * 259.27923 * 11 9 7 31 31 H 1.08997 * 109.91866 * 241.87015 * 12 11 9 32 32 H 1.09000 * 109.91848 * 120.57743 * 12 11 9 33 33 H 1.08999 * 109.47413 * 57.37349 * 14 13 12 34 34 H 1.08996 * 109.46914 * 297.37356 * 14 13 12 35 35 H 1.09000 * 109.59213 * 113.79514 * 18 17 15 36 36 H 1.09007 * 109.58683 * 353.36580 * 18 17 15 37 37 H 1.09001 * 109.49292 * 185.40929 * 19 18 17 38 38 H 1.08998 * 109.49706 * 65.31663 * 19 18 17 39 39 H 1.09000 * 109.46201 * 301.35728 * 20 19 18 40 40 H 0.96696 * 116.99875 * 179.97438 * 23 21 20 41 41 H 1.09000 * 109.49536 * 58.58255 * 24 20 19 42 42 H 1.08999 * 109.49675 * 178.67492 * 24 20 19 43 43 H 1.08997 * 109.58506 * 246.20326 * 25 17 15 44 44 H 1.09003 * 109.58300 * 6.49015 * 25 17 15 45 45 H 1.08998 * 110.66650 * 157.63965 * 26 13 12 46 46 H 1.08998 * 110.66780 * 280.77478 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3973 2.1037 -1.3954 5 1 1.4999 2.6219 0.7971 6 1 3.5929 1.4135 0.5982 7 6 2.0045 -1.1940 -0.0005 8 1 1.4668 -2.1280 0.0711 9 6 3.5081 -1.1960 -0.1012 10 8 4.0889 -0.5258 1.0193 11 6 4.0470 -2.6407 -0.2140 12 6 5.1934 -2.5633 -1.2392 13 7 5.3104 -1.1483 -1.6534 14 6 5.7066 -1.0438 -3.0641 15 6 5.7527 0.4078 -3.4667 16 8 5.4160 1.2664 -2.6792 17 7 6.1680 0.7516 -4.7019 18 6 6.2189 2.1625 -5.1088 19 6 5.4287 2.3289 -6.4107 20 6 5.9681 1.3527 -7.4585 21 6 5.2157 1.5374 -8.7511 22 8 4.3380 2.3642 -8.8264 23 8 5.5206 0.7832 -9.8188 24 6 5.7845 -0.0833 -6.9623 25 6 6.5795 -0.2772 -5.6668 26 6 3.9695 -0.5493 -1.4314 27 1 -0.4850 0.8400 0.0004 28 1 3.8915 -0.9395 1.8707 29 1 3.2642 -3.3096 -0.5716 30 1 4.4240 -2.9818 0.7502 31 1 4.9612 -3.1853 -2.1036 32 1 6.1251 -2.8939 -0.7801 33 1 4.9818 -1.5702 -3.6851 34 1 6.6921 -1.4896 -3.1987 35 1 7.2553 2.4592 -5.2699 36 1 5.7756 2.7836 -4.3304 37 1 5.5382 3.3505 -6.7746 38 1 4.3751 2.1190 -6.2261 39 1 7.0278 1.5470 -7.6243 40 1 5.0104 0.9376 -10.6256 41 1 4.7276 -0.2703 -6.7726 42 1 6.1474 -0.7789 -7.7190 43 1 7.6452 -0.1790 -5.8733 44 1 6.3764 -1.2660 -5.2555 45 1 4.0441 0.5332 -1.3272 46 1 3.2912 -0.8129 -2.2428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:36 Heat of formation + Delta-G solvation = -150.767330 kcal Electronic energy + Delta-G solvation = -29306.603994 eV Core-core repulsion = 25196.808498 eV Total energy + Delta-G solvation = -4109.795496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01445 -40.05787 -38.47577 -37.22106 -36.46416 -34.78825 -33.37458 -32.25353 -31.74259 -30.54848 -28.20891 -27.41598 -26.01144 -24.15874 -23.44727 -22.73857 -21.02934 -20.41366 -19.54442 -19.09478 -18.41505 -17.48445 -17.22181 -16.70590 -16.07577 -15.93613 -15.66769 -15.21365 -14.76271 -14.64680 -14.36487 -14.16247 -13.90354 -13.75121 -13.62781 -13.28959 -12.81507 -12.77187 -12.59275 -12.20054 -12.16488 -11.93552 -11.90502 -11.64420 -11.59819 -11.26268 -11.22342 -11.15686 -11.05071 -10.78546 -10.64400 -10.35939 -10.05307 -9.78616 -9.45214 -8.82007 -8.69509 -8.52469 -8.14217 -7.83041 -6.08970 -4.20536 1.82157 2.58834 2.77282 2.86315 3.52769 3.63350 3.93733 4.13426 4.19941 4.42708 4.47042 4.60877 4.66758 4.73118 4.89668 4.95785 5.07541 5.15833 5.23594 5.25510 5.32147 5.36166 5.42638 5.44234 5.47765 5.62185 5.63946 5.69965 5.76554 5.91817 5.93104 6.12345 6.23983 6.36669 6.41700 6.61327 6.75080 7.01866 7.18092 7.28037 7.39340 7.50768 7.56985 7.74301 8.33888 8.35019 8.87208 9.14986 9.57197 11.00698 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.003552 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.436013 B = 7882.026141 C = 8596.071290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.088 3.912 3 Si 0.862 3.138 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.221 3.779 10 O -0.563 6.563 11 C -0.146 4.146 12 C 0.042 3.958 13 N -0.501 5.501 14 C 0.028 3.972 15 C 0.515 3.485 16 O -0.505 6.505 17 N -0.624 5.624 18 C 0.114 3.886 19 C -0.122 4.122 20 C -0.077 4.077 21 C 0.481 3.519 22 O -0.511 6.511 23 O -0.517 6.517 24 C -0.129 4.129 25 C 0.111 3.889 26 C 0.047 3.953 27 H 0.265 0.735 28 H 0.356 0.644 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.410 0.590 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.667 -2.275 -18.157 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.117 4.117 3 Si 0.689 3.311 4 H -0.212 1.212 5 H -0.229 1.229 6 H -0.130 1.130 7 C -0.591 4.591 8 H 0.092 0.908 9 C 0.181 3.819 10 O -0.368 6.368 11 C -0.184 4.184 12 C -0.086 4.086 13 N -0.226 5.226 14 C -0.103 4.103 15 C 0.303 3.697 16 O -0.378 6.378 17 N -0.361 5.361 18 C -0.008 4.008 19 C -0.160 4.160 20 C -0.096 4.096 21 C 0.323 3.677 22 O -0.398 6.398 23 O -0.329 6.329 24 C -0.167 4.167 25 C -0.012 4.012 26 C -0.080 4.080 27 H 0.074 0.926 28 H 0.202 0.798 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.269 0.731 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.943 -0.888 -17.527 24.394 hybrid contribution -0.999 0.086 -1.071 1.467 sum 15.944 -0.802 -18.598 24.510 Atomic orbital electron populations 1.69950 1.06779 1.27479 1.48677 1.24980 0.94565 0.99904 0.92275 0.87289 0.83465 0.81819 0.78494 1.21200 1.22940 1.12986 1.21352 0.88998 0.94805 1.53927 0.90751 1.19882 0.91721 0.86196 0.84125 1.86662 1.77534 1.56275 1.16346 1.23031 0.96450 1.00748 0.98184 1.22812 0.99353 0.88566 0.97828 1.64771 1.29983 1.13474 1.14378 1.22216 1.02378 0.93062 0.92693 1.20711 0.76414 0.91792 0.80762 1.90743 1.45454 1.51679 1.49915 1.48180 1.67669 1.06986 1.13304 1.21542 1.00067 0.82813 0.96387 1.21894 1.01490 0.99125 0.93492 1.21064 1.01006 0.98645 0.88899 1.23538 0.81442 0.77283 0.85405 1.90752 1.30759 1.34122 1.84143 1.84525 1.63382 1.61513 1.23482 1.21971 1.02557 0.94205 0.97989 1.21709 0.98665 0.92388 0.88458 1.23678 0.85593 1.01667 0.97020 0.92601 0.79832 0.91234 0.91895 0.94666 0.91168 0.92127 0.88453 0.91294 0.88115 0.89651 0.90221 0.87002 0.73133 0.90513 0.89076 0.90746 0.88930 0.88247 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.88 13.96 55.43 0.77 -27.10 16 2 C 0.09 2.61 5.44 -17.82 -0.10 2.51 16 3 Si 0.86 23.60 24.23 -169.99 -4.12 19.48 16 4 H -0.29 -8.01 7.11 56.52 0.40 -7.61 16 5 H -0.30 -8.25 7.11 56.52 0.40 -7.85 16 6 H -0.21 -5.69 5.14 56.52 0.29 -5.40 16 7 C -0.55 -15.66 8.81 -34.44 -0.30 -15.97 16 8 H 0.07 2.24 7.84 -52.48 -0.41 1.83 16 9 C 0.22 5.35 0.78 -89.91 -0.07 5.28 16 10 O -0.56 -13.64 9.93 -35.23 -0.35 -13.99 16 11 C -0.15 -2.88 6.25 -25.37 -0.16 -3.04 16 12 C 0.04 0.72 6.70 -2.76 -0.02 0.70 16 13 N -0.50 -9.75 5.16 -231.90 -1.20 -10.95 16 14 C 0.03 0.42 3.64 -4.97 -0.02 0.40 16 15 C 0.52 8.40 7.48 -10.99 -0.08 8.31 16 16 O -0.51 -10.87 13.33 5.56 0.07 -10.80 16 17 N -0.62 -7.29 2.97 -172.74 -0.51 -7.80 16 18 C 0.11 1.23 6.43 -3.71 -0.02 1.20 16 19 C -0.12 -1.18 4.65 -26.61 -0.12 -1.31 16 20 C -0.08 -0.58 2.59 -91.73 -0.24 -0.81 16 21 C 0.48 4.28 7.63 36.01 0.27 4.55 16 22 O -0.51 -6.47 16.74 -18.75 -0.31 -6.78 16 23 O -0.52 -3.20 13.30 -39.26 -0.52 -3.72 16 24 C -0.13 -0.89 5.30 -26.60 -0.14 -1.03 16 25 C 0.11 0.81 6.32 -3.69 -0.02 0.79 16 26 C 0.05 1.11 3.60 -1.90 -0.01 1.10 16 27 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 28 H 0.36 7.39 9.09 45.56 0.41 7.81 16 29 H 0.07 1.38 7.70 -51.93 -0.40 0.98 16 30 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.04 0.52 7.69 -51.93 -0.40 0.12 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.82 7.72 -51.93 -0.40 0.42 16 34 H 0.10 1.11 7.75 -51.93 -0.40 0.70 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 1.36 7.01 -51.93 -0.36 0.99 16 37 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.41 1.03 9.10 45.56 0.41 1.45 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.60 5.95 -51.93 -0.31 0.29 16 45 H 0.10 2.64 3.28 -51.93 -0.17 2.47 16 46 H 0.05 1.13 7.90 -51.93 -0.41 0.72 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -39.01 356.98 -7.29 -46.30 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.48 Total: 7.28 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.03 Total: 2.70 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.94 Total: -45.85 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.11 Total: -35.29 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.12 Total: 19.48 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -39.01 -7.29 -46.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.464 kcal (2) G-P(sol) polarization free energy of solvation -39.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds