Wall clock time and date at job start Fri Apr 10 2020 18:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00382 * 2 1 4 4 H 1.48502 * 109.47286 * 239.99863 * 3 2 1 5 5 H 1.48507 * 109.46867 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47186 * 119.99671 * 3 2 1 7 7 C 1.38814 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99753 * 148.08624 * 7 2 1 9 9 N 1.36933 * 120.00224 * 328.07950 * 7 2 1 10 10 C 1.46496 * 120.00016 * 323.76167 * 9 7 2 11 11 C 1.52995 * 109.47455 * 263.56479 * 10 9 7 12 12 O 1.42908 * 109.47136 * 65.00234 * 11 10 9 13 13 C 1.46498 * 119.99955 * 143.76086 * 9 7 2 14 14 C 1.53038 * 109.46033 * 300.00193 * 13 9 7 15 15 C 1.53196 * 109.31240 * 181.38481 * 14 13 9 16 16 N 1.46920 * 108.77590 * 305.36631 * 15 14 13 17 17 C 1.34780 * 120.63248 * 233.58773 * 16 15 14 18 18 O 1.21277 * 119.99544 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00260 * 180.02562 * 17 16 15 20 20 H 1.09004 * 115.55053 * 51.05046 * 19 17 16 21 21 C 1.52996 * 117.50255 * 196.75884 * 19 17 16 22 22 C 1.53002 * 60.00221 * 107.48956 * 21 19 17 23 23 H 1.08994 * 117.49617 * 107.48986 * 22 21 19 24 24 C 1.50697 * 117.51871 * 252.52296 * 22 21 19 25 25 O 1.20825 * 120.00242 * 337.05741 * 24 22 21 26 26 O 1.34228 * 119.99673 * 157.05558 * 24 22 21 27 27 C 1.46926 * 118.74060 * 53.60840 * 16 15 14 28 28 C 1.53043 * 109.46041 * 60.07143 * 13 9 7 29 29 H 0.97003 * 119.99898 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47437 * 23.56907 * 10 9 7 31 31 H 1.09007 * 109.47186 * 143.56374 * 10 9 7 32 32 H 1.09001 * 109.47182 * 184.99646 * 11 10 9 33 33 H 1.08998 * 109.47388 * 305.00299 * 11 10 9 34 34 H 0.96691 * 114.00176 * 179.97438 * 12 11 10 35 35 H 1.09003 * 109.44986 * 180.02562 * 13 9 7 36 36 H 1.09002 * 109.49634 * 61.43741 * 14 13 9 37 37 H 1.08998 * 109.49629 * 301.33284 * 14 13 9 38 38 H 1.09004 * 109.58793 * 65.15363 * 15 14 13 39 39 H 1.08996 * 109.58625 * 185.43514 * 15 14 13 40 40 H 1.08998 * 117.50386 * 214.97671 * 21 19 17 41 41 H 1.09007 * 117.49455 * 359.97438 * 21 19 17 42 42 H 0.96703 * 116.99834 * 180.02562 * 26 24 22 43 43 H 1.09005 * 109.59038 * 66.17885 * 27 16 15 44 44 H 1.09005 * 109.59328 * 186.60638 * 27 16 15 45 45 H 1.09000 * 109.49900 * 58.66270 * 28 13 9 46 46 H 1.08995 * 109.49381 * 298.56789 * 28 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9678 -1.2731 -0.4939 9 7 1.4808 -2.2981 0.6280 10 6 0.7219 -2.1354 1.8705 11 6 1.6415 -2.3882 3.0668 12 8 2.6558 -1.3824 3.1089 13 6 1.6733 -3.6334 0.0569 14 6 1.0643 -3.6804 -1.3463 15 6 1.2369 -5.0876 -1.9266 16 7 2.6598 -5.4497 -1.8740 17 6 3.3046 -5.8635 -2.9828 18 8 2.7099 -5.9402 -4.0370 19 6 4.7641 -6.2318 -2.9125 20 1 5.0334 -6.9383 -2.1273 21 6 5.5369 -6.3117 -4.2305 22 6 5.7842 -5.1483 -3.2681 23 1 6.7246 -5.1421 -2.7171 24 6 5.2523 -3.7942 -3.6614 25 8 5.0376 -3.5438 -4.8237 26 8 5.0172 -2.8664 -2.7204 27 6 3.3664 -5.3525 -0.5895 28 6 3.1701 -3.9423 -0.0242 29 1 -0.4850 0.8401 -0.0004 30 1 0.3261 -1.1211 1.9244 31 1 -0.1025 -2.8484 1.8888 32 1 1.0582 -2.3547 3.9870 33 1 2.1064 -3.3690 2.9668 34 1 3.2762 -1.4800 3.8440 35 1 1.1838 -4.3732 0.6904 36 1 1.5704 -2.9581 -1.9869 37 1 0.0032 -3.4375 -1.2906 38 1 0.6568 -5.7990 -1.3387 39 1 0.8922 -5.1013 -2.9606 40 1 6.3148 -7.0708 -4.3128 41 1 4.9895 -6.0982 -5.1486 42 1 4.6759 -2.0129 -3.0209 43 1 2.9601 -6.0854 0.1076 44 1 4.4293 -5.5402 -0.7419 45 1 3.6077 -3.8857 0.9725 46 1 3.6562 -3.2175 -0.6772 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:58 Heat of formation + Delta-G solvation = -118.041620 kcal Electronic energy + Delta-G solvation = -30238.047890 eV Core-core repulsion = 26129.671487 eV Total energy + Delta-G solvation = -4108.376403 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80929 -39.55568 -37.80712 -36.52550 -36.08256 -35.70924 -34.61508 -31.99548 -30.75489 -30.37008 -27.77822 -25.99668 -25.20038 -24.03921 -23.17475 -22.20385 -20.88455 -20.60580 -19.80102 -18.74635 -18.08190 -17.44106 -16.66325 -16.43279 -16.24631 -15.91525 -15.23482 -14.78736 -14.70749 -14.50613 -14.42025 -13.85916 -13.80485 -13.37835 -13.15111 -12.84656 -12.77516 -12.54825 -12.13747 -12.07863 -11.95232 -11.50206 -11.42229 -11.24221 -11.06691 -11.00799 -10.89146 -10.68001 -10.57452 -10.49663 -10.42769 -10.12146 -9.93011 -9.83342 -9.64403 -9.45560 -9.14268 -8.38381 -8.26567 -6.57557 -5.77038 -3.17841 2.11284 2.56008 2.89435 3.08500 3.44339 3.51946 3.59751 3.60574 4.34851 4.41111 4.53655 4.58376 4.90402 5.12275 5.17873 5.19596 5.23482 5.37394 5.43604 5.51940 5.53299 5.59944 5.73530 5.84919 5.89609 5.97960 5.99234 6.08033 6.16452 6.28484 6.37758 6.44859 6.60237 6.63998 6.68874 6.77683 6.91481 7.17155 7.24893 7.47433 7.58265 7.93767 8.00064 8.28058 8.41922 8.59503 9.23027 9.90440 10.47370 11.26103 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.004649 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.782403 B = 6021.640038 C = 6736.091018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.244 4.244 8 H 0.056 0.944 9 N -0.570 5.570 10 C 0.153 3.847 11 C 0.059 3.941 12 O -0.544 6.544 13 C 0.178 3.822 14 C -0.131 4.131 15 C 0.111 3.889 16 N -0.594 5.594 17 C 0.532 3.468 18 O -0.538 6.538 19 C -0.161 4.161 20 H 0.139 0.861 21 C -0.116 4.116 22 C -0.142 4.142 23 H 0.147 0.853 24 C 0.502 3.498 25 O -0.506 6.506 26 O -0.500 6.500 27 C 0.110 3.890 28 C -0.141 4.141 29 H 0.252 0.748 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.019 0.981 33 H 0.024 0.976 34 H 0.350 0.650 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.418 0.582 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.700 -13.383 1.848 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.178 4.178 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.074 0.926 9 N -0.289 5.289 10 C 0.026 3.974 11 C -0.022 4.022 12 O -0.345 6.345 13 C 0.070 3.930 14 C -0.170 4.170 15 C -0.012 4.012 16 N -0.326 5.326 17 C 0.319 3.681 18 O -0.416 6.416 19 C -0.182 4.182 20 H 0.157 0.843 21 C -0.153 4.153 22 C -0.161 4.161 23 H 0.165 0.835 24 C 0.344 3.656 25 O -0.394 6.394 26 O -0.312 6.312 27 C -0.013 4.013 28 C -0.180 4.180 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.042 0.958 34 H 0.193 0.807 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.278 0.722 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.959 -13.358 0.558 16.094 hybrid contribution 0.542 1.325 0.715 1.600 sum 9.501 -12.033 1.274 15.385 Atomic orbital electron populations 1.70219 1.05781 1.25842 1.50302 1.24908 0.94460 0.98716 0.99702 0.86709 0.79783 0.84094 0.78203 1.21223 1.22237 1.20684 1.18581 0.99016 0.87722 1.32000 0.92598 1.43704 1.62623 1.01080 1.21449 1.20845 0.90696 1.02476 0.83386 1.23095 0.90467 0.89744 0.98853 1.86855 1.43385 1.52157 1.52087 1.20300 0.92211 0.88350 0.92118 1.22274 1.02230 0.93631 0.98909 1.21788 0.79580 0.97422 1.02389 1.48056 1.11518 1.64279 1.08781 1.19522 0.87363 0.77539 0.83690 1.90708 1.67938 1.53843 1.29091 1.22371 0.91139 1.01769 1.02936 0.84307 1.23145 1.01120 0.96666 0.94389 1.21746 1.01057 0.86067 1.07273 0.83511 1.22138 0.74192 0.85972 0.83332 1.90733 1.48026 1.80062 1.20539 1.84498 1.77462 1.27451 1.41805 1.21845 0.96381 0.99121 0.83955 1.22374 1.00395 0.94296 1.00983 0.93851 0.89568 0.94441 0.96283 0.95754 0.80716 0.93873 0.91126 0.91011 0.92129 0.89872 0.86353 0.86290 0.72221 0.92001 0.90535 0.91674 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 12.22 55.49 0.68 -24.18 16 2 C 0.02 0.62 4.58 -17.43 -0.08 0.54 16 3 Si 0.88 21.75 29.66 -169.99 -5.04 16.71 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.24 7.98 -15.06 -0.12 -6.36 16 8 H 0.06 1.46 6.97 -52.48 -0.37 1.09 16 9 N -0.57 -12.80 2.33 -165.62 -0.39 -13.19 16 10 C 0.15 3.33 5.61 -4.05 -0.02 3.31 16 11 C 0.06 1.07 7.38 37.15 0.27 1.34 16 12 O -0.54 -10.70 13.44 -35.23 -0.47 -11.18 16 13 C 0.18 3.31 2.59 -67.89 -0.18 3.13 16 14 C -0.13 -2.48 5.31 -26.61 -0.14 -2.63 16 15 C 0.11 1.79 6.43 -3.71 -0.02 1.76 16 16 N -0.59 -8.82 2.97 -172.77 -0.51 -9.33 16 17 C 0.53 8.23 6.45 -10.99 -0.07 8.16 16 18 O -0.54 -10.41 15.81 5.56 0.09 -10.33 16 19 C -0.16 -1.77 4.41 -91.77 -0.40 -2.17 16 20 H 0.14 1.05 7.68 -51.93 -0.40 0.65 16 21 C -0.12 -1.19 9.55 -26.73 -0.26 -1.44 16 22 C -0.14 -1.53 6.29 -91.77 -0.58 -2.11 16 23 H 0.15 1.08 8.14 -51.93 -0.42 0.66 16 24 C 0.50 7.43 7.04 36.00 0.25 7.68 16 25 O -0.51 -9.21 17.27 -18.75 -0.32 -9.53 16 26 O -0.50 -7.12 12.43 -39.25 -0.49 -7.61 16 27 C 0.11 1.40 6.34 -3.71 -0.02 1.37 16 28 C -0.14 -2.26 5.30 -26.61 -0.14 -2.40 16 29 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.09 2.21 5.94 -51.93 -0.31 1.90 16 31 H 0.04 0.76 8.06 -51.93 -0.42 0.34 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.35 4.93 9.12 45.56 0.42 5.35 16 35 H 0.04 0.75 7.88 -51.93 -0.41 0.34 16 36 H 0.07 1.56 7.71 -51.93 -0.40 1.16 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.46 7.01 -51.93 -0.36 1.10 16 40 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.12 1.58 7.49 -51.92 -0.39 1.19 16 42 H 0.42 5.23 9.10 45.56 0.41 5.65 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.80 6.06 -51.93 -0.31 0.49 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.08 1.50 6.03 -51.93 -0.31 1.18 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -34.92 375.20 -7.68 -42.60 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.37 Total: 10.19 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -1.51 Total: 10.19 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.22 Total: -46.70 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.20 Total: -38.64 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.04 Total: 16.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.92 -7.68 -42.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.443 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds